mRNA_Ecto-sp9_F_contig1176.1463.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1176.1463.1
Unique NamemRNA_Ecto-sp9_F_contig1176.1463.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1176.1463.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z1_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 6.500e-94
Identity = 231/274 (84.31%), Postives = 233/274 (85.04%), Query Frame = 1 
Query:    1 MRSGRSLPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDADSFVSRISDWFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPSILAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA---------------------------FMQPDGAGGNFGMPGLQQQTAPGSGSSRLFSDGSSAGGAIDPNGMAVG 741
            MRSGRSLPGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     D DSFVSRISDWFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPSILAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                              QPDG GG+FGMPGLQQQ AP SGSS+LFSDGSS GGAIDPNGMAVG
Sbjct:    1 MRSGRSLPGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----DTDSFVSRISDWFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPSILAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQGKQMLLMQEWVPSDAAPPRVMSACLPLAQPDGGGGHFGMPGLQQQAAPASGSSQLFSDGSSGGGAIDPNGMAVG 269
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BLAST of mRNA_Ecto-sp9_F_contig1176.1463.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC3_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 5.290e-66
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:  175 MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK 465
            MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK
Sbjct:    1 MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1176.1463.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.500e-9484.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.290e-66100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1176contigEcto-sp9_F_contig1176:2487..4577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_007610.1
Exons4
Model size741
Cds size741
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1176.1463.1prot_Ecto-sp9_F_contig1176.1463.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1176 2487..4577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928434.963432-CDS-Ecto-sp9_F_contig1176:2486..26211622928434.963432-CDS-Ecto-sp9_F_contig1176:2486..2621Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 2487..2621 -
1692277869.9311817-CDS-Ecto-sp9_F_contig1176:2486..26211692277869.9311817-CDS-Ecto-sp9_F_contig1176:2486..2621Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 2487..2621 -
1622928434.9804895-CDS-Ecto-sp9_F_contig1176:2869..30891622928434.9804895-CDS-Ecto-sp9_F_contig1176:2869..3089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 2870..3089 -
1692277869.9406435-CDS-Ecto-sp9_F_contig1176:2869..30891692277869.9406435-CDS-Ecto-sp9_F_contig1176:2869..3089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 2870..3089 -
1622928434.9950461-CDS-Ecto-sp9_F_contig1176:3360..34881622928434.9950461-CDS-Ecto-sp9_F_contig1176:3360..3488Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 3361..3488 -
1692277869.9509645-CDS-Ecto-sp9_F_contig1176:3360..34881692277869.9509645-CDS-Ecto-sp9_F_contig1176:3360..3488Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 3361..3488 -
1622928435.0076575-CDS-Ecto-sp9_F_contig1176:4319..45771622928435.0076575-CDS-Ecto-sp9_F_contig1176:4319..4577Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 4320..4577 -
1692277869.9589844-CDS-Ecto-sp9_F_contig1176:4319..45771692277869.9589844-CDS-Ecto-sp9_F_contig1176:4319..4577Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1176 4320..4577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1176.1463.1

>prot_Ecto-sp9_F_contig1176.1463.1 ID=prot_Ecto-sp9_F_contig1176.1463.1|Name=mRNA_Ecto-sp9_F_contig1176.1463.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=247bp
MRSGRSLPGGGGGGGGPGAGNSNNKIVVSNKNTTGGGGGNGGNGGDADSF
VSRISDWFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAG
MRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQ
PAKAKVGKRKPSILAAQQKEDTAAQRLAAQQQQQQQQQQQHFQRQQQQAF
MQPDGAGGNFGMPGLQQQTAPGSGSSRLFSDGSSAGGAIDPNGMAVG
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mRNA from alignment at Ecto-sp9_F_contig1176:2487..4577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1176.1463.1 ID=mRNA_Ecto-sp9_F_contig1176.1463.1|Name=mRNA_Ecto-sp9_F_contig1176.1463.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2091bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1176:2487..4577- (Ectocarpus species9 EcSCA_722f female)
ATGAGGTCCGGGAGGTCGTTGCCAGGCGGCGGCGGCGGCGGCGGTGGCCC
CGGGGCCGGCAACAGCAACAACAAGATCGTCGTCAGCAACAAGAACACCA
CCGGCGGAGGCGGAGGAAACGGCGGTAATGGCGGGGACGCCGATTCGTTC
GTGTCGCGCATCTCCGACTGGTTCATGAAGTGGAAAGTCCGCCCGGATGT
GGTCCTGCGTGGCCGACACGAGAACAAGAGCAAGGGGGCGCTCAGCGCCT
TCTGGCAGGTATGTAAGAGACGGCACCGAGCCGTGCTGATGCTACTAAAT
AGTATACTGCTGTGTTGTTTCTTGAAGCGAGTTGGGGGGTGGTGGGGGGT
GCGTACTAATGTTTTGCATGCCTCGGCGATTAGACCATTGGCCACGCGTC
CTTGAGAGGAAACAGGTTGGCCGGGAGAGGGGTGGTAGGCGTCCGAACGT
CGTTCGGTCGATTCTTGTCGCTTGTTGTTCGTGGGTGTGGTTTGCTGGAG
AGGAGAGAGCAGCAACGTCGCCGGTGCGTCTACATATTGTCTCCGCGTGA
GAAACCAGGAGTATTTCCCTACTATGCATGCCTGTATGCCGTGGGCGGAG
GTATACGTGGGGGTGGATTCCCCGAGCCCACAGTGATCGGTCCGCCATTG
CCGGGGGTACGCAGAGCCAAGGTGGGACTGGCGGGAGATGCATTGATCTA
CGAAGCCCCAGGGAAGTGTAAATGGAGGTGGTTGTTTCTCAGCCTGCGAT
ATTGCGTTAGGGTCAAGTACAACCCCACGGGGGATGGAGGCTAGACACCG
GGGTTATGGCCGATTCGTCAAGTATGGCGCGGAGACGTGGAAGGGAGGGT
CAGGGTATGTTATGTTGTGTTTTCCGCTGCTGTTTGCTCTCATATAGTTT
TAGAAAATACACATACAATCACAACAGAGACCGTTCGAGGTATTACCACA
GCAGCCGAACGTGTTCAAGTATTTGCAAGTGAGTGAGAGAAAAAAAAAGA
AAAAACGGCTGAATGTACCCGCCTTATTCTGAGTCTGTTTGTCTCTTTGA
TCTGATCGCCGCCCCCGCCAACAACAATGATAACGGCAGGATTACAAGAA
GGTCCGGGTAGACTGGCGGGCGCGAGCGGGGATGCGAAGAGATCACTTCG
AGCTCGCCCTCCAGCACTACATGAGAATAGACGGACCCAGCCGCGACACC
TGCGAGGGTCGCATTCGGTGAGCAAGAAACCAGCCATGCGTAGACAGGCT
TCCCGTGCCAAGGCTGGTTTCCGTGCTGCTAGTGCTGCTGATTTTGCTGC
TATTGTGCTGCTGCTGCTGGGAAGGCTGTACTGTCCTGACTGCTAGCATG
ATAGATTATGTTGTGTCCAGAGCGGAGAAGATTGCCGAGCTCCACCGCCC
GCTCCCCCCCCCCCCCTCTCCCAATCCCCGAACGCTCACCCCCCCCCCCT
CCCCCCCTCTTCTCTCTCAACCCCGGAATGCCTTTCAGATACATCTGGGA
AACCCGCATCCGAGACAACAGCCACCTCGGGGTGGTGGACGTGTCTTGTC
AGCCGGCCAAAGCGAAGGTGGGTAAGCGCAAGCCTTCTATCCTAGCGGCG
CAGCAGAAGGAGGATACCGCCGCGCAGCGCCTGGCGGCGCAACAGCAGCA
ACAGCAGCAGCAGCAGCAGCAGCACTTCCAAAGGCAGCAACAGCAGGCGT
TCATGCAGGTGCGTTTTTTTGTGCTGTTAGAGAGAGTGGTACGTCACCAA
TGCTGCTGCTGTTGGTTGTTGTGCTATGCCATGGGTTGGTCGGTGGTGCA
AGCTCTTTGCACATCTCGTCTTGAACAGACATCAGATGGCTGTCCTTGTT
GTGTTTCCAGGGCAAACTAATGTTGCCCATGCAAGCATAGGTCCCAAGCG
ACGCTGCCTCCCCGCCCCTCCCCGCTTATCGTGTCTGCGTGCCCCCCCTT
GCCCAGCCTGACGGGGCAGGAGGTAACTTTGGCATGCCAGGCCTCCAACA
GCAGACTGCACCCGGCTCGGGCTCTTCCCGACTCTTCTCTGACGGCAGCA
GCGCCGGTGGCGCTATAGACCCCAACGGCATGGCGGTAGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1176:2487..4577-

>mRNA_Ecto-sp9_F_contig1176.1463.1 ID=mRNA_Ecto-sp9_F_contig1176.1463.1|Name=mRNA_Ecto-sp9_F_contig1176.1463.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1482bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1176:2487..4577- (Ectocarpus species9 EcSCA_722f female)
ATGAGGTCCGGGAGGTCGTTGCCAGGCGGCGGCGGCGGCGGCGGTGGCCC
CGGGGCCGGCAACAGCAACAACAAGATCGTCGTCAGCAACAAGAACACCA
CCGGCGGAGGCGGAGGAAACGGCGGTAATGGCGGGGACGCCGATTCGTTC
GTGTCGCGCATCTCCGACTGGTTCATGAAGTGGAAAGTCCGCCCGGATGT
GGTCCTGCGTGGCCGACACGAGAACAAGAGCAAGGGGGCGCTCAGCGCCT
TCTGGCAGATGAGGTCCGGGAGGTCGTTGCCAGGCGGCGGCGGCGGCGGC
GGTGGCCCCGGGGCCGGCAACAGCAACAACAAGATCGTCGTCAGCAACAA
GAACACCACCGGCGGAGGCGGAGGAAACGGCGGTAATGGCGGGGACGCCG
ATTCGTTCGTGTCGCGCATCTCCGACTGGTTCATGAAGTGGAAAGTCCGC
CCGGATGTGGTCCTGCGTGGCCGACACGAGAACAAGAGCAAGGGGGCGCT
CAGCGCCTTCTGGCAGGATTACAAGAAGGTCCGGGTAGACTGGCGGGCGC
GAGCGGGGATGCGAAGAGATCACTTCGAGCTCGCCCTCCAGCACTACATG
AGAATAGACGGACCCAGCCGCGACACCTGCGAGGGTCGCATTCGGATTAC
AAGAAGGTCCGGGTAGACTGGCGGGCGCGAGCGGGGATGCGAAGAGATCA
CTTCGAGCTCGCCCTCCAGCACTACATGAGAATAGACGGACCCAGCCGCG
ACACCTGCGAGGGTCGCATTCGATACATCTGGGAAACCCGCATCCGAGAC
AACAGCCACCTCGGGGTGGTGGACGTGTCTTGTCAGCCGGCCAAAGCGAA
GGTGGGTAAGCGCAAGCCTTCTATCCTAGCGGCGCAGCAGAAGGAGGATA
CCGCCGCGCAGCGCCTGGCGGCGCAACAGCAGCAACAGCAGCAGCAGCAG
CAGCAGCACTTCCAAAGGCAGCAACAGCAGGCGTTCATGCAGATACATCT
GGGAAACCCGCATCCGAGACAACAGCCACCTCGGGGTGGTGGACGTGTCT
TGTCAGCCGGCCAAAGCGAAGGTGGGTAAGCGCAAGCCTTCTATCCTAGC
GGCGCAGCAGAAGGAGGATACCGCCGCGCAGCGCCTGGCGGCGCAACAGC
AGCAACAGCAGCAGCAGCAGCAGCAGCACTTCCAAAGGCAGCAACAGCAG
GCGTTCATGCAGCCTGACGGGGCAGGAGGTAACTTTGGCATGCCAGGCCT
CCAACAGCAGACTGCACCCGGCTCGGGCTCTTCCCGACTCTTCTCTGACG
GCAGCAGCGCCGGTGGCGCTATAGACCCCAACGGCATGGCGGTAGGCCCT
GACGGGGCAGGAGGTAACTTTGGCATGCCAGGCCTCCAACAGCAGACTGC
ACCCGGCTCGGGCTCTTCCCGACTCTTCTCTGACGGCAGCAGCGCCGGTG
GCGCTATAGACCCCAACGGCATGGCGGTAGGC
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