mRNA_Ecto-sp9_F_contig1175.1454.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Intraflagellar (transpot protein 74 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE8_ECTSI) HSP 1 Score: 216 bits (551), Expect = 2.600e-66 Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 3
Query: 99 MRPGSRGYIGGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
MRPGSRGY+GGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK
Sbjct: 1 MRPGSRGYVGGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 124
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU06_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.390e-38 Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 3
Query: 99 MRPGSRGYIGGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQ 305
MRPGSRGY+GGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQ
Sbjct: 1 MRPGSRGYVGGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQ 69
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Intraflagellar (transport protein 74 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE00_9STRA) HSP 1 Score: 100 bits (248), Expect = 9.230e-22 Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 3
Query: 132 GLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
G PPGTG+R TG R MRTG SREAAYGVAL+ EV V +RPVTQQGMSGM+T+ R VQDGSFF+G LR K+ D++ EL +L+AE ++H K
Sbjct: 10 GQMPPGTGLRTGTGMR--------MRTGAAPPTASREAAYGVALTHEVNVDNRPVTQQGMSGMRTS-----QGAGPGRLVQDGSFFLGQLRQKIMDIQRELAKLKAEGEQHTK 109
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XWW9_HETAK) HSP 1 Score: 99.4 bits (246), Expect = 2.640e-21 Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 3
Query: 93 GTMRPGSRGYIGGGLQPPGTGMRMATGQRGGRPMSG--RMRTGQVTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHE 467
G M PG+ + PGTGMR A GQRG M G R+RTG + AGP AA GV + V V+DRPVTQQGMSGMKTAG RQVQD S++IGVLR+K+ ++ E+ +L+ EI++H+
Sbjct: 10 GMMVPGTAQRV------PGTGMRTAAGQRG---MLGTARLRTG-MAAGPGNVAAVGVGMQTAVNVSDRPVTQQGMSGMKTAGQGPG------RQVQDPSYYIGVLRAKLTEIATEISKLKREINQHQ 120
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE55_PYTOL) HSP 1 Score: 91.3 bits (225), Expect = 1.790e-18 Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 3
Query: 144 PGTGMRMATGQRGGRPMSGRMRTGQ-VTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMK--TAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
PGTG R + G GRP++GR+ TGQ V A P + A +G++L+ EV V+DRPVTQQGM GM+ TAG RQVQD SFF+G L +K +++ E+ +L+ EI++ K
Sbjct: 33 PGTGQRSSLGSSAGRPLTGRLGTGQAVPATPGQTAGFGISLNTEVNVSDRPVTQQGMMGMRVGTAGPG--------RQVQDASFFMGKLHAKTSEITTEIEKLRKEIEQDAK 136
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Intraflagellar (Transport Protein 72/74 n=9 Tax=Phytophthora TaxID=4783 RepID=D0NIV2_PHYIT) HSP 1 Score: 90.9 bits (224), Expect = 2.480e-18 Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 3
Query: 144 PGTGMR-MATGQRGGRPMSGRMRTGQ-VTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
PGTG R M T GGRP++GR+ TGQ V A P + A YG++L+ EV V+DRPVTQQGM GM+ RQVQD SFF G L SK ++ +E+ +LQ E+++ K
Sbjct: 67 PGTGQRGMLTSASGGRPLTGRLGTGQQVPATPGQTAGYGISLNTEVNVSDRPVTQQGMMGMRVGSAGPG------RQVQDASFFKGKLHSKTAEITSEIEKLQREVEQDAK 171
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M4D3_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.630e-18 Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 3
Query: 144 PGTGMR-MATGQRGGRPMSGRMRTGQ-VTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
PGTG R M T GGRP++GR+ TGQ V A P + A YG++L+ EV V+DRPVTQQGM GM+ RQVQD SFF G L SK ++ E+ +LQ EI++ K
Sbjct: 405 PGTGQRGMLTSASGGRPLTGRLGTGQQVPATPGQTAGYGISLNTEVNVSDRPVTQQGMMGMRVGSAGPG------RQVQDASFFKGKLHSKTAEITTEIEKLQREIEQDAK 509
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB40_PHYRM) HSP 1 Score: 89.0 bits (219), Expect = 1.260e-17 Identity = 61/130 (46.92%), Postives = 76/130 (58.46%), Query Frame = 3
Query: 105 PGSRGYIGGGLQPPGTGMRMATGQRG-------GRPMSGRMRTGQ-VTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
P R G L P TG R TGQRG GRP++GR+ TGQ A P + A +GV+L+ EV V+DRPVTQQGM GM+T RQVQD SFF G L SK ++ AE+ +LQ EI++ K
Sbjct: 611 PSGRPGTGQSLNPI-TGARPGTGQRGMLLSASGGRPLTGRLGTGQQAPATPGQTAGFGVSLNTEVNVSDRPVTQQGMMGMRTG----TGSAGPGRQVQDASFFKGKLHSKTAEIAAEVEKLQREIEQDAK 735
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXK3_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.580e-17 Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = 3
Query: 105 PGSRGYIGGGLQPPGTGMRMATGQRG-------GRPMSGRMRTGQ-VTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
P R G L P TG+R TGQRG GRP++GR+ TGQ A P + A YG++L+ EV V+DRPVTQQGM GM+ RQVQD SFF G L SK ++ +E+ +LQ EI++ K
Sbjct: 28 PSGRPGTGQSLNPI-TGVRPGTGQRGMLGSSAGGRPLTGRLGTGQQAPATPGQTAGYGISLNTEVNVSDRPVTQQGMMGMRVG----TGSAGPGRQVQDASFFKGKLHSKTAEITSEIDKLQREIEQDAK 152
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLW1_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.730e-17 Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = 3
Query: 105 PGSRGYIGGGLQPPGTGMRMATGQRG-------GRPMSGRMRTGQ-VTAGPSREAAYGVALSQEVKVTDRPVTQQGMSGMKTAGXXXXXXXXXXRQVQDGSFFIGVLRSKMNDVRAELGRLQAEIDRHEK 470
P R G L P TG+R TGQRG GRP++GR+ TGQ A P + A YG++L+ EV V+DRPVTQQGM GM+ RQVQD SFF G L SK ++ +E+ +LQ EI++ K
Sbjct: 795 PSGRPGTGQSLNPI-TGVRPGTGQRGMLGSSAGGRPLTGRLGTGQQAPATPGQTAGYGISLNTEVNVSDRPVTQQGMMGMRVG----TGSAGPGRQVQDASFFKGKLHSKTAEITSEIDKLQREIEQDAK 919 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1175.1454.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1175.1454.1 >prot_Ecto-sp9_F_contig1175.1454.1 ID=prot_Ecto-sp9_F_contig1175.1454.1|Name=mRNA_Ecto-sp9_F_contig1175.1454.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=124bp MRPGSRGYIGGGLQPPGTGMRMATGQRGGRPMSGRMRTGQVTAGPSREAAback to top mRNA from alignment at Ecto-sp9_F_contig1175:3469..5195- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1175.1454.1 ID=mRNA_Ecto-sp9_F_contig1175.1454.1|Name=mRNA_Ecto-sp9_F_contig1175.1454.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1727bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1175:3469..5195- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1175:3469..5195- >mRNA_Ecto-sp9_F_contig1175.1454.1 ID=mRNA_Ecto-sp9_F_contig1175.1454.1|Name=mRNA_Ecto-sp9_F_contig1175.1454.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1175:3469..5195- (Ectocarpus species9 EcSCA_722f female)back to top |