mRNA_Ecto-sp9_F_contig11730.1443.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11730.1443.1
Unique NamemRNA_Ecto-sp9_F_contig11730.1443.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: virulence-associated (E family protein n=1 Tax=Loktanella sp. F6476L TaxID=2926405 RepID=UPI001FF4E05F)

HSP 1 Score: 116 bits (290), Expect = 1.690e-27
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:   25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
            V+ S G  +N GKV N    WS       +P RT E  R++   + + +  LK   GYWMR+QN+DG RKRGN+ P  LI+LDFDYAT  +FE  + G+L  G  + I TSR HTEE+PRFR+++
Sbjct:    9 VRFSQG-RKNFGKVDNKSISWSMFKDKFRRPTRTGERMREYLKLSEKEQRELKSVDGYWMRAQNKDGIRKRGNAEPSDLISLDFDYATPDFFELAKAGKLLPGVEHFIQTSRRHTEEHPRFRLVI 132          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: DNA (primase n=1 Tax=Synechococcus virus S-ESS1 TaxID=1964565 RepID=A0A1V0DX42_9CAUD)

HSP 1 Score: 104 bits (260), Expect = 2.220e-24
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   16 NTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSL-PGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMILVCS 408
            N  +  S+G   N GK  N   P SK +    KPH TPE  R++K+ + +R+  LKG+AG++MR   E G  +  NS+ P  ++TLD DYAT  + E +  GE+  GY    HT+RSHT E PRFR+++  S
Sbjct:   12 NIMIVFSLGTGDNLGKSRNVKEPISKFIDRFRKPHVTPEKYREYKAASDKRQRFLKGSAGWFMRGGVEKGQNRNRNSIMPSQIVTLDIDYATPEFSEMLLAGEILPGYRMIAHTTRSHTPEKPRFRIMVFLS 143          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sulfitobacter geojensis TaxID=1342299 RepID=A0A7Y9Z361_9RHOB)

HSP 1 Score: 92.8 bits (229), Expect = 2.780e-19
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSL-PGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
            +  S+G   N GK  N      + ++  + PH TPE   ++K  + +R+  LKG+ G+ MR   + G  +  NS+ P  LITLD DYAT+ + E ++ GE+  G  +  H++RSHT ENPR R+I+
Sbjct:   12 ILYSLGSGVNLGKSKNTTETIKRFVERFKTPHVTPEKWAEYKKASDKRQQKLKGSGGWMMRGGVKPGENRNRNSIMPSLLITLDIDYATREFVEMLQAGEILPGTAFIAHSTRSHTPENPRLRIIV 137          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Virulence-associated (protein E n=2 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316GRF8_9RHOB)

HSP 1 Score: 86.3 bits (212), Expect = 5.420e-17
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:    4 PLTPNTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMILV 402
            P+ P   ++ ++GD+ N GK  N   P    ++  E P  T E   D+ +F   ++  LKG  G++M +Q E G R +    P  L+T+D DYAT  + E +  G+   G     H+SR HT E PR R++++
Sbjct:    5 PMFPARQIRFALGDATNLGKAKNLSEPLQHFMKRFETPVPTSEKFHDYLTFHDRKQAFLKGVGGWFMPAQTETGTRNKRGIQPRDLVTMDVDYATPEFQENLLAGKFVPGICLFAHSSRRHTPEKPRLRVMVI 137          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: virulence-associated (E family protein n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CBE8FDC)

HSP 1 Score: 80.9 bits (198), Expect = 4.150e-15
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
            ++ S G  +N GK  N    +    ++ + P RT E  + + S +++ +++LK   G+  R+Q E   R R +  P  LITLD DYAT  + ++V  G +     Y +H++R H +E PR R+ +
Sbjct:    2 IRFSRGTGKNFGKAKNLTKSYLDFRKLFQNPTRTKERFKVYLSKSVDEQVDLKSVDGWIYRTQIEGKRRNRASGKPSDLITLDLDYATAEFMDRVEMGLVLAEIDYFVHSTRRHEDEKPRLRVFI 126          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aurantimonas aggregata TaxID=2047720 RepID=A0A6L9MFH1_9HYPH)

HSP 1 Score: 78.6 bits (192), Expect = 2.670e-14
Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   16 NTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAV--GYGYAIHTSRSHTEENPRFRMI 396
            N  +++S G  ++ GKV N    W  L   L KP  T ET + + +   E +  LK   G+W+ S   DG RK+ N  P  ++ LDFD  T +   K+   E  +     + IHT+R HT E PR RM+
Sbjct:    8 NDIIRIS-GGRQSLGKVKNITPSWGMLTATLSKPQITQETFKQYMALKKEEQDLLKNVNGFWIGSHCIDGRRKKTNLRPRDVLALDFDNMTPALLSKIMRREFNILKRVEFFIHTTRKHTAEKPRIRMV 135          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cereibacter sphaeroides TaxID=1063 RepID=A0A2W5RWT8_CERSP)

HSP 1 Score: 75.9 bits (185), Expect = 2.330e-13
Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = 1
Query:   25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQ---NEDGHRKRG--NSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMILV 402
            V+ S G S+N G+  N V  W +  +  + P  +PE    ++  + + +   K  AG++ R+Q   NE G  +R   +     ++T DFDYAT  + +++  G +A    Y   T+RSHT E PR R+I++
Sbjct:   10 VRFSTGKSKNLGRAKNTVLSWPEFKKRFKNPGVSPEKFARYQKMSQQEQGEAKSFAGWFFRTQVTENEKGKTQRTAKSGQASDIVTYDFDYATPEFLDQIEEGLVAWDIPYIAFTTRSHTPEKPRLRIIVL 140          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Maritimibacter sp. TaxID=2003363 RepID=A0A3D0G2H0_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 8.060e-13
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVG-YGYAIHTSRSHTEENPRFRMIL 399
            VKL V    ++G+  N  W  +KLL++L+ P     T   +K   ++ K  +K ++GY+     E G RK  +    + +  D D AT      + NG+  +  + Y  HT+RSH+ ENPR+R+I+
Sbjct:   16 VKLKVAHGTHRGECKNESWTDAKLLRVLQNPSVDARTFGSYKKLDVDEKAKVKASSGYYKFGHYEGGIRKITHLQNISALAYDLDNATHKQIAYIINGKAGINAFRYFAHTTRSHSPENPRWRIIV 141          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: DUF5906 (domain-containing protein n=1 Tax=Klebsiella phage YMC16/01/N133_KPN_BP TaxID=2026102 RepID=A0A248XDB8_9CAUD)

HSP 1 Score: 70.9 bits (172), Expect = 1.310e-11
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 1
Query:   25 VKLSVGD--SRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKV--RNG-ELAVGYGYAIHTSRSHTEENPRFRMIL 399
            +K+S G    +N   V N    W +L+   E+P R   T  D+   ++E + NLK   GY++  Q +DG R++ N    +++TLD D    + ++++  R G E   G  Y +HT+R HT E PRFR+I+
Sbjct:    7 LKVSFGKPGKKNLSVVKNEELTWQELVSRFEEPVRDDVTLADYLDMSVEEQRNLKNK-GYFVGGQFKDGKRRKVNLECRSVVTLDIDDHADTVWDEIIYRGGIEGLKGLAYHVHTTRKHTIEKPRFRVIV 135          
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Virulence-associated (E family protein n=50 Tax=Clostridioides TaxID=1870884 RepID=T3DDY2_CLODI)

HSP 1 Score: 67.8 bits (164), Expect = 1.540e-10
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   31 LSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
            L++G S+ +    N    WS+L+  L K  RT ET  ++K  +   K  +K   G+ +    ++G RK  N    ++ITLD DYA ++ ++ +    L   Y   ++++ SHTE NPR+R+++
Sbjct:   21 LAIGKSKLETHWKNKSILWSELVNRLSKTLRTQETYTEYKKMSKTEKDRVKDVGGF-VGGSLKNGRRKAENIANRSIITLDIDYADKAIWDDIT---LLNDYACLMYSTHSHTESNPRYRLLI 139          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
virulence-associated1.690e-2746.40E family protein n=1 Tax=Loktanella sp. F6476L Tax... [more]
DNA2.220e-2441.67primase n=1 Tax=Synechococcus virus S-ESS1 TaxID=1... [more]
Uncharacterized2.780e-1937.30protein n=1 Tax=Sulfitobacter geojensis TaxID=1342... [more]
Virulence-associated5.420e-1733.08protein E n=2 Tax=Silicimonas algicola TaxID=18266... [more]
virulence-associated4.150e-1531.20E family protein n=1 Tax=Oricola indica TaxID=2872... [more]
Uncharacterized2.670e-1434.88protein n=1 Tax=Aurantimonas aggregata TaxID=20477... [more]
Uncharacterized2.330e-1331.30protein n=1 Tax=Cereibacter sphaeroides TaxID=1063... [more]
Uncharacterized8.060e-1331.75protein n=1 Tax=Maritimibacter sp. TaxID=2003363 R... [more]
DUF59061.310e-1133.85domain-containing protein n=1 Tax=Klebsiella phage... [more]
Virulence-associated1.540e-1030.89E family protein n=50 Tax=Clostridioides TaxID=187... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11730contigEcto-sp9_F_contig11730:3336..3743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.3
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog1121024.AUCD01000022_gene932
EggNOG free text desc.Virulence-associated protein E
EggNOG OGs1TQNX@1239,27FKT@186828,4HCHZ@91061,COG5545@1,COG5545@2
COG Functional cat.S
Best tax levelCarnobacteriaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928432.2937922-CDS-Ecto-sp9_F_contig11730:3335..37431622928432.2937922-CDS-Ecto-sp9_F_contig11730:3335..3743Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11730 3336..3743 +
1692277869.0940871-CDS-Ecto-sp9_F_contig11730:3335..37431692277869.0940871-CDS-Ecto-sp9_F_contig11730:3335..3743Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11730 3336..3743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11730.1443.1prot_Ecto-sp9_F_contig11730.1443.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11730 3336..3743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11730.1443.1

>prot_Ecto-sp9_F_contig11730.1443.1 ID=prot_Ecto-sp9_F_contig11730.1443.1|Name=mRNA_Ecto-sp9_F_contig11730.1443.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=136bp
MPLTPNTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFK
SFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYF
EKVRNGELAVGYGYAIHTSRSHTEENPRFRMILVCS
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mRNA from alignment at Ecto-sp9_F_contig11730:3336..3743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11730.1443.1 ID=mRNA_Ecto-sp9_F_contig11730.1443.1|Name=mRNA_Ecto-sp9_F_contig11730.1443.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11730:3336..3743+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCTTACCCCGAATACGCCTGTCAAGCTGTCCGTTGGTGACTCCCG AAACAAAGGCAAGGTTATCAACCACGTCTGGCCGTGGTCGAAACTCCTGC AAATGTTGGAAAAGCCGCACCGGACGCCAGAGACGCAACGGGATTTCAAG AGCTTTGCGCTAGAACGAAAGATCAATCTCAAGGGCGCGGCTGGGTATTG GATGCGCTCCCAGAACGAGGACGGCCACCGCAAGCGCGGCAACAGCTTGC CGGGAACCCTGATCACGCTGGACTTCGACTACGCGACTCAGTCCTACTTT GAAAAGGTCCGCAATGGCGAGCTGGCCGTGGGCTACGGCTACGCGATCCA CACGTCGCGGAGCCACACTGAGGAAAACCCCCGCTTCCGGATGATCCTCG TTTGCTCT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11730:3336..3743+

>mRNA_Ecto-sp9_F_contig11730.1443.1 ID=mRNA_Ecto-sp9_F_contig11730.1443.1|Name=mRNA_Ecto-sp9_F_contig11730.1443.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11730:3336..3743+ (Ectocarpus species9 EcSCA_722f female)
ATGCCTCTTACCCCGAATACGCCTGTCAAGCTGTCCGTTGGTGACTCCCG
AAACAAAGGCAAGGTTATCAACCACGTCTGGCCGTGGTCGAAACTCCTGC
AAATGTTGGAAAAGCCGCACCGGACGCCAGAGACGCAACGGGATTTCAAG
AGCTTTGCGCTAGAACGAAAGATCAATCTCAAGGGCGCGGCTGGGTATTG
GATGCGCTCCCAGAACGAGGACGGCCACCGCAAGCGCGGCAACAGCTTGC
CGGGAACCCTGATCACGCTGGACTTCGACTACGCGACTCAGTCCTACTTT
GAAAAGGTCCGCAATGGCGAGCTGGCCGTGGGCTACGGCTACGCGATCCA
CACGTCGCGGAGCCACACTGAGGAAAACCCCCGCTTCCGGATGATCCTCG
TTTGCTCTATGCCTCTTACCCCGAATACGCCTGTCAAGCTGTCCGTTGGT
GACTCCCGAAACAAAGGCAAGGTTATCAACCACGTCTGGCCGTGGTCGAA
ACTCCTGCAAATGTTGGAAAAGCCGCACCGGACGCCAGAGACGCAACGGG
ATTTCAAGAGCTTTGCGCTAGAACGAAAGATCAATCTCAAGGGCGCGGCT
GGGTATTGGATGCGCTCCCAGAACGAGGACGGCCACCGCAAGCGCGGCAA
CAGCTTGCCGGGAACCCTGATCACGCTGGACTTCGACTACGCGACTCAGT
CCTACTTTGAAAAGGTCCGCAATGGCGAGCTGGCCGTGGGCTACGGCTAC
GCGATCCACACGTCGCGGAGCCACACTGAGGAAAACCCCCGCTTCCGGAT
GATCCTCGTTTGCTCT
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