mRNA_Ecto-sp9_F_contig11730.1443.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: virulence-associated (E family protein n=1 Tax=Loktanella sp. F6476L TaxID=2926405 RepID=UPI001FF4E05F) HSP 1 Score: 116 bits (290), Expect = 1.690e-27 Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
V+ S G +N GKV N WS +P RT E R++ + + + LK GYWMR+QN+DG RKRGN+ P LI+LDFDYAT +FE + G+L G + I TSR HTEE+PRFR+++
Sbjct: 9 VRFSQG-RKNFGKVDNKSISWSMFKDKFRRPTRTGERMREYLKLSEKEQRELKSVDGYWMRAQNKDGIRKRGNAEPSDLISLDFDYATPDFFELAKAGKLLPGVEHFIQTSRRHTEEHPRFRLVI 132
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: DNA (primase n=1 Tax=Synechococcus virus S-ESS1 TaxID=1964565 RepID=A0A1V0DX42_9CAUD) HSP 1 Score: 104 bits (260), Expect = 2.220e-24 Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query: 16 NTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSL-PGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMILVCS 408
N + S+G N GK N P SK + KPH TPE R++K+ + +R+ LKG+AG++MR E G + NS+ P ++TLD DYAT + E + GE+ GY HT+RSHT E PRFR+++ S
Sbjct: 12 NIMIVFSLGTGDNLGKSRNVKEPISKFIDRFRKPHVTPEKYREYKAASDKRQRFLKGSAGWFMRGGVEKGQNRNRNSIMPSQIVTLDIDYATPEFSEMLLAGEILPGYRMIAHTTRSHTPEKPRFRIMVFLS 143
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sulfitobacter geojensis TaxID=1342299 RepID=A0A7Y9Z361_9RHOB) HSP 1 Score: 92.8 bits (229), Expect = 2.780e-19 Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSL-PGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
+ S+G N GK N + ++ + PH TPE ++K + +R+ LKG+ G+ MR + G + NS+ P LITLD DYAT+ + E ++ GE+ G + H++RSHT ENPR R+I+
Sbjct: 12 ILYSLGSGVNLGKSKNTTETIKRFVERFKTPHVTPEKWAEYKKASDKRQQKLKGSGGWMMRGGVKPGENRNRNSIMPSLLITLDIDYATREFVEMLQAGEILPGTAFIAHSTRSHTPENPRLRIIV 137
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Virulence-associated (protein E n=2 Tax=Silicimonas algicola TaxID=1826607 RepID=A0A316GRF8_9RHOB) HSP 1 Score: 86.3 bits (212), Expect = 5.420e-17 Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 4 PLTPNTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMILV 402
P+ P ++ ++GD+ N GK N P ++ E P T E D+ +F ++ LKG G++M +Q E G R + P L+T+D DYAT + E + G+ G H+SR HT E PR R++++
Sbjct: 5 PMFPARQIRFALGDATNLGKAKNLSEPLQHFMKRFETPVPTSEKFHDYLTFHDRKQAFLKGVGGWFMPAQTETGTRNKRGIQPRDLVTMDVDYATPEFQENLLAGKFVPGICLFAHSSRRHTPEKPRLRVMVI 137
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: virulence-associated (E family protein n=1 Tax=Oricola indica TaxID=2872591 RepID=UPI001CBE8FDC) HSP 1 Score: 80.9 bits (198), Expect = 4.150e-15 Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
++ S G +N GK N + ++ + P RT E + + S +++ +++LK G+ R+Q E R R + P LITLD DYAT + ++V G + Y +H++R H +E PR R+ +
Sbjct: 2 IRFSRGTGKNFGKAKNLTKSYLDFRKLFQNPTRTKERFKVYLSKSVDEQVDLKSVDGWIYRTQIEGKRRNRASGKPSDLITLDLDYATAEFMDRVEMGLVLAEIDYFVHSTRRHEDEKPRLRVFI 126
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aurantimonas aggregata TaxID=2047720 RepID=A0A6L9MFH1_9HYPH) HSP 1 Score: 78.6 bits (192), Expect = 2.670e-14 Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = 1
Query: 16 NTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAV--GYGYAIHTSRSHTEENPRFRMI 396
N +++S G ++ GKV N W L L KP T ET + + + E + LK G+W+ S DG RK+ N P ++ LDFD T + K+ E + + IHT+R HT E PR RM+
Sbjct: 8 NDIIRIS-GGRQSLGKVKNITPSWGMLTATLSKPQITQETFKQYMALKKEEQDLLKNVNGFWIGSHCIDGRRKKTNLRPRDVLALDFDNMTPALLSKIMRREFNILKRVEFFIHTTRKHTAEKPRIRMV 135
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cereibacter sphaeroides TaxID=1063 RepID=A0A2W5RWT8_CERSP) HSP 1 Score: 75.9 bits (185), Expect = 2.330e-13 Identity = 41/131 (31.30%), Postives = 69/131 (52.67%), Query Frame = 1
Query: 25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQ---NEDGHRKRG--NSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMILV 402
V+ S G S+N G+ N V W + + + P +PE ++ + + + K AG++ R+Q NE G +R + ++T DFDYAT + +++ G +A Y T+RSHT E PR R+I++
Sbjct: 10 VRFSTGKSKNLGRAKNTVLSWPEFKKRFKNPGVSPEKFARYQKMSQQEQGEAKSFAGWFFRTQVTENEKGKTQRTAKSGQASDIVTYDFDYATPEFLDQIEEGLVAWDIPYIAFTTRSHTPEKPRLRIIVL 140
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Maritimibacter sp. TaxID=2003363 RepID=A0A3D0G2H0_9RHOB) HSP 1 Score: 74.3 bits (181), Expect = 8.060e-13 Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 25 VKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVG-YGYAIHTSRSHTEENPRFRMIL 399
VKL V ++G+ N W +KLL++L+ P T +K ++ K +K ++GY+ E G RK + + + D D AT + NG+ + + Y HT+RSH+ ENPR+R+I+
Sbjct: 16 VKLKVAHGTHRGECKNESWTDAKLLRVLQNPSVDARTFGSYKKLDVDEKAKVKASSGYYKFGHYEGGIRKITHLQNISALAYDLDNATHKQIAYIINGKAGINAFRYFAHTTRSHSPENPRWRIIV 141
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: DUF5906 (domain-containing protein n=1 Tax=Klebsiella phage YMC16/01/N133_KPN_BP TaxID=2026102 RepID=A0A248XDB8_9CAUD) HSP 1 Score: 70.9 bits (172), Expect = 1.310e-11 Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 1
Query: 25 VKLSVGD--SRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKV--RNG-ELAVGYGYAIHTSRSHTEENPRFRMIL 399
+K+S G +N V N W +L+ E+P R T D+ ++E + NLK GY++ Q +DG R++ N +++TLD D + ++++ R G E G Y +HT+R HT E PRFR+I+
Sbjct: 7 LKVSFGKPGKKNLSVVKNEELTWQELVSRFEEPVRDDVTLADYLDMSVEEQRNLKNK-GYFVGGQFKDGKRRKVNLECRSVVTLDIDDHADTVWDEIIYRGGIEGLKGLAYHVHTTRKHTIEKPRFRVIV 135
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Match: Virulence-associated (E family protein n=50 Tax=Clostridioides TaxID=1870884 RepID=T3DDY2_CLODI) HSP 1 Score: 67.8 bits (164), Expect = 1.540e-10 Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 31 LSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKSFALERKINLKGAAGYWMRSQNEDGHRKRGNSLPGTLITLDFDYATQSYFEKVRNGELAVGYGYAIHTSRSHTEENPRFRMIL 399
L++G S+ + N WS+L+ L K RT ET ++K + K +K G+ + ++G RK N ++ITLD DYA ++ ++ + L Y ++++ SHTE NPR+R+++
Sbjct: 21 LAIGKSKLETHWKNKSILWSELVNRLSKTLRTQETYTEYKKMSKTEKDRVKDVGGF-VGGSLKNGRRKAENIANRSIITLDIDYADKAIWDDIT---LLNDYACLMYSTHSHTESNPRYRLLI 139 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11730.1443.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11730.1443.1 >prot_Ecto-sp9_F_contig11730.1443.1 ID=prot_Ecto-sp9_F_contig11730.1443.1|Name=mRNA_Ecto-sp9_F_contig11730.1443.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=136bp MPLTPNTPVKLSVGDSRNKGKVINHVWPWSKLLQMLEKPHRTPETQRDFKback to top mRNA from alignment at Ecto-sp9_F_contig11730:3336..3743+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11730.1443.1 ID=mRNA_Ecto-sp9_F_contig11730.1443.1|Name=mRNA_Ecto-sp9_F_contig11730.1443.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11730:3336..3743+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11730:3336..3743+ >mRNA_Ecto-sp9_F_contig11730.1443.1 ID=mRNA_Ecto-sp9_F_contig11730.1443.1|Name=mRNA_Ecto-sp9_F_contig11730.1443.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11730:3336..3743+ (Ectocarpus species9 EcSCA_722f female)back to top |