mRNA_Ecto-sp9_F_contig11707.1422.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE) HSP 1 Score: 328 bits (841), Expect = 3.450e-101 Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 1
Query: 13 RVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
RVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRW+AKAYLVEGAGTKCCNGVYRVSPEYTAN PTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKA+WWFI
Sbjct: 230 RVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWHAKAYLVEGAGTKCCNGVYRVSPEYTANAPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAHWWFI 387
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI) HSP 1 Score: 192 bits (489), Expect = 4.030e-56 Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1
Query: 1 MKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVE 291
MKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGE+EMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAK YL +
Sbjct: 264 MKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEKEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKVYLAD 360
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIN8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.690e-17 Identity = 58/163 (35.58%), Postives = 84/163 (51.53%), Query Frame = 1
Query: 1 MKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVR-FHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
MK + L +E+L++E+ + L +++ + + G+ E E R F E + + + SL M+L+ WEQ DLI + R A +Y+VEG+GT NGVY + P+ N +DA YT P PL+TLFRC MRTKA WWFI
Sbjct: 191 MKLLLNLPDEQLRRENTDVLNNMLHATSGICKHLAAIGM-----HEYVEKFRVFWFENTFKFMNSGSLVMKLFAWEQLNDLILEAKHTRPLASSYIVEGSGTAFVNGVYTMVPKPMNNNTLNN----TNDDALTYTKAATAPHMPLLTLFRCTMRTKAKWWFI 344
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8D3_GLOUD) HSP 1 Score: 70.9 bits (172), Expect = 2.530e-11 Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 1
Query: 34 LKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
LKKES +A+G ++ IR ++ GV A + E+ R++ ++SLP+RL+G EQ ++N + R Y+V AGT NGVY + P+ T Y +Q +E D + TLF C M++ + WWFI
Sbjct: 249 LKKESSDAIGAVLAIIRRLV----DSGVVAAAAIN-----KLWLEITQRYVESTSLPLRLFGLEQINLIVNSARASRSFPPRYIVRNAGTSMLNGVYTLKPDSTTAT---------------YVHQ-REGTDQVFTLFCCTMKSGSKWWFI 374
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBU9_PHYRM) HSP 1 Score: 67.4 bits (163), Expect = 4.650e-10 Identity = 49/156 (31.41%), Postives = 75/156 (48.08%), Query Frame = 1
Query: 19 LSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
+S+ LKKES +A+G ++ IR ++ AG ++ R++ ++SLP+RL+G EQ ++N + R YLV AGT NGVY + KA T A Y ++ +E G + TLF C M++ WWFI
Sbjct: 234 ISDSVLKKESSDAVGAVIAIIRRLVD---------AGIVSSEAINALWLDITERYVESTSLPLRLFGLEQINQIVNCARASRAFPPQYLVRNAGTAAVNGVYHL----------KANSTSAT-----YVFRQQETGQ-VFTLFCCTMKSGLKWWFI 364
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQF1_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.700e-10 Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 1
Query: 1 MKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSP-EYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
M+ + SEE LKK E L LV ++ + + + E F LVL+ + + SLP++L+GW+Q E L+ S HR ++++ E AG + NG YR E ++G + E G +TLFRC MR++ WWF+
Sbjct: 282 MRYITSCSEEALKKVPMEDLKLLVHDLLCIF-----DKLIEFRRPDTYEFYSFWRGLVLKLITSQSLPLKLFGWQQMETLLEASAAHRPPPRSFVAEDAGCRFVNGEYRFKGIETDDGYGLRSGKDNEISYMREIPEDEPEGGGKTLTLFRCTMRSQQKWWFL 439
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9W0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 3.180e-9 Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 1
Query: 19 LSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQ-GKEPGDPLMTLFRCKMRTKAYWWFI 486
+S+ LKKES +A+G ++ IR ++ AG E+ R++ ++SLP+RL+G EQ ++N + R YLV AGT NGVY + + D+ TY +E D + TLF C M++ WWFI
Sbjct: 242 ISDSVLKKESSDAVGAVLAIIRRLVD---------AGVVSSEAINALWLEITERYVESTSLPLRLFGLEQINQIVNCARASRAFPPRYLVRNAGTAMVNGVYTL-----------------KTDSATATYVLRREETDQVFTLFCCTMKSGLKWWFI 372
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Ubiquitin-specific (protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT) HSP 1 Score: 65.1 bits (157), Expect = 3.220e-9 Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 1
Query: 34 LKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
LKKES +A+G ++ IR ++ AG ++ R++ ++SLP+RL+G EQ ++N + R Y V AGT NGVY + KA T A Y ++ +E G + TLF C M++ WWFI
Sbjct: 243 LKKESSDAVGAVIGIIRRLVD---------AGIVSSEATNALWLDITERYVESTSLPLRLFGLEQINQIVNCARASRAFPPRYFVRNAGTAAVNGVYTL----------KANSTSAT-----YVFRQQETGQ-VFTLFCCTMKSGLKWWFI 368
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329ST13_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 3.220e-9 Identity = 48/156 (30.77%), Postives = 74/156 (47.44%), Query Frame = 1
Query: 19 LSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
+S+ LKKES +A+G ++ IR ++ AG ++ R++ ++SLP+RL+G EQ ++N + R Y V AGT NGVY + KA T A Y ++ +E G + TLF C M++ WWFI
Sbjct: 210 ISDSVLKKESSDAVGAVIGIIRRLVD---------AGIVSSEAINALWLDITERYVESTSLPLRLFGLEQINQIVNCARASRAFPPRYFVRNAGTAAVNGVYTL----------KANSTSAT-----YVFRQQETGQ-VFTLFCCTMKSGLKWWFI 340
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Match: Ubiquitin-specific (protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNK5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 4.380e-9 Identity = 48/156 (30.77%), Postives = 74/156 (47.44%), Query Frame = 1
Query: 19 LSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENVRFHSELVLRHLRASSLPMRLWGWEQTEDLINHSHRHRWNAKAYLVEGAGTKCCNGVYRVSPEYTANVPTKAGPTPAEEDAPKYTYQGKEPGDPLMTLFRCKMRTKAYWWFI 486
+S+ LKKES +A+G ++ IR ++ AG ++ R++ ++SLP+RL+G EQ ++N + R Y V AGT NGVY + KA T A Y ++ +E G + TLF C M++ WWFI
Sbjct: 238 ISDSVLKKESSDAVGAVIGIIRRLVD---------AGIVSSETINSLWLDITERYVESTSLPLRLFGLEQINQIVNCARASRAFPPRYFVRNAGTATVNGVYTL----------KANSTSAT-----YVFRQQETGQ-VFTLFCCTMKSGLKWWFI 368 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11707.1422.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11707.1422.1 >prot_Ecto-sp9_F_contig11707.1422.1 ID=prot_Ecto-sp9_F_contig11707.1422.1|Name=mRNA_Ecto-sp9_F_contig11707.1422.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=162bp MKQVRVLSEEELKKESQEALGHLVRNIRHVMMFQTSPGVPYAGEQEMRENback to top mRNA from alignment at Ecto-sp9_F_contig11707:168..1926- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11707.1422.1 ID=mRNA_Ecto-sp9_F_contig11707.1422.1|Name=mRNA_Ecto-sp9_F_contig11707.1422.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1759bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11707:168..1926- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11707:168..1926- >mRNA_Ecto-sp9_F_contig11707.1422.1 ID=mRNA_Ecto-sp9_F_contig11707.1422.1|Name=mRNA_Ecto-sp9_F_contig11707.1422.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11707:168..1926- (Ectocarpus species9 EcSCA_722f female)back to top |