mRNA_Ecto-sp9_F_contig117.1412.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX95_ECTSI) HSP 1 Score: 356 bits (913), Expect = 9.530e-123 Identity = 183/186 (98.39%), Postives = 186/186 (100.00%), Query Frame = 3
Query: 150 MQSQDPMDNIRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSNDEGEWQDEPGTDGMAPGTPV 707
MQSQDPMDNIR+AVEHADKNPSKVVSYSWYLVL+FAAVD+LVALINASTNDSSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSNDEGEWQDEPGTDGMAPGTPV
Sbjct: 1 MQSQDPMDNIRAAVEHADKNPSKVVSYSWYLVLIFAAVDVLVALINASTNDSSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSNDEGEWQDEPGTDGMAPGTPV 186
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F7_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.880e-34 Identity = 70/151 (46.36%), Postives = 99/151 (65.56%), Query Frame = 3
Query: 177 IRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSS-ANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNT 626
+ + +NP + V +SW++ ++F ++V+++ AS N S A G AA+F ++W L ++L V V GTVIL+KYHTPLAVG LLGLT+M+SQ +FVLFAVFLAL + + D MA F F LF L+ LFS VL ++R TV+ T
Sbjct: 12 LSDVMSDVKRNPGRCVGFSWFVTIIFVLAMVVVSIVTASKNSQSEAIGGDAAAFTALWVLLVLLLVGVTGTVILRKYHTPLAVGLLLGLTSMLSQLLFVLFAVFLALGQESGTH--QDSDHAMAAFMFILFFLFLLFSIVLAKFRMTVIET 160
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CT56_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.290e-23 Identity = 62/172 (36.05%), Postives = 100/172 (58.14%), Query Frame = 3
Query: 168 MDNIRSAVEHAD----------KNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPG--LATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSN 647
MD ++S+++ D ++P+ ++ + W L +V A D++ +L AS NDS +GS A FA++W++FMV+G+SV L K+ TP A+G L+G MMSQ LF VF+ LA A++ L + + MA FSF LF++YG+F ++ ++R V A S+
Sbjct: 1 MDKLKSSIKCVDGCPPSMARYKEDPAVLLQHIWLLSVVIAFADVITSLSVASGNDSLRHGSKGAGFAAIWSMFMVIGISVYAYYALTKWCTPFAIGYLIGALLMMSQMFLTLFCVFVGLARAAEDTDDQLNSDNGAMAFFSFVLFVVYGVFGGLVFKHRGAVTKGVSDAPSS 172
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TJI2_9STRA) HSP 1 Score: 101 bits (251), Expect = 9.300e-22 Identity = 71/231 (30.74%), Postives = 111/231 (48.05%), Query Frame = 3
Query: 3 LCTHTPRKHRPRLVSCAVSSPLRCQLVHTGYRASV-QHQGDGGDRALFSTMQSQDP--MDNIRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANG-SHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA-------DEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVM----NTPGTASSND 650
LC +H PRL CQL + ++ Q FS S+ P M++ S NP +++Y W+ ++F + + A++ A ND S + F VW + +++ +SV GT++++K+ TPLAVG L+G+ MMS MF L +F A A DE + +VFSFF+F+LY +F+ VL R+R V+ N A +ND
Sbjct: 18 LCVIALCRHHPRL-KAETKKGCECQLPDGAHSPTLPQAAAPANSVHSFSPASSKMPTAMEDASSKARKCINNPKMLITYLWFSTILFGFMYAIAAIVAAVNNDGEGESDSKSLGFVGVWAMILIVALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFTIVLVRHRNIVIKEGVNLDPNAINND 247
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N1N4_HETAK) HSP 1 Score: 97.8 bits (242), Expect = 1.360e-21 Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 3
Query: 195 HADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANGSHAA-SFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSNDEG 656
H +NP K + Y+W L A+ + A + AS S GS+ A FA V+T+ +++ +SV GT +L+KY TPLAVG LG+ MMSQ ++FAVF A D +A F F LF++YG F+ VL +R +M +SN G
Sbjct: 11 HCARNPDKTIQYTWLASLALVAISFICACVAASK--ISTEGSNTAIGFAGVYTVLLMILLSVGGTFVLRKYKTPLAVGFFLGVVLMMSQQCLIIFAVFAGRAGVTTLSSEIGADNAVAFFCFVLFMVYGFFAGVLAFFRNDLMKATDAYNSNAGG 163
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDT8_GLOUD) HSP 1 Score: 98.6 bits (244), Expect = 2.100e-21 Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 3
Query: 207 NPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANG-SHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA-------DEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNT-----PGTASSND 650
NP +++Y W++ L+F + L A++ A N+ S S + F +W + +V+G+SV GT++++KY TPLAVG L+G+ MMS MF L +F A A DE + +VFSFF+F+LY FS VL ++R ++ P A S+D
Sbjct: 18 NPKLLITYLWFITLIFGFMYALAAIVAAVNNNGSGEADSKSLGFVGIWAMLLVIGLSVGGTMVMRKYQTPLAVGFLIGVVLMMSLQMFSLSVLFAGAAYLARQERDKGDESTSIHSNEAGSVFSFFMFVLYLAFSIVLVKHRNVIIKEGVSLDPAAAGSSD 178
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XBJ2_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 9.650e-21 Identity = 70/218 (32.11%), Postives = 106/218 (48.62%), Query Frame = 3
Query: 39 LVSCAVSSPLRCQLVHTGYRASVQHQGDGGDRALFSTMQSQDP--MDNIRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANG-SHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA-------DEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVM----NTPGTASSND 650
LV C S L C H SV FS S+ P M++ S NP +++Y W+ ++F + + A++ A ND S + F VW + +++ +SV GT++++K+ TPLAVG L+G+ MMS MF L +F A A DE + +VFSFF+F+LY +F+ VL R+R V+ N A +ND
Sbjct: 23 LVRCG-SGQLCCYCAHAAPANSVHS---------FSPASSKMPTAMEDASSKARKCINNPKMLITYLWFSTILFGFMYAIAAIVAAVNNDGEGESDSKSLGFVGVWAMILIVALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFTIVLVRHRNIVIKEGVNLDPNAINND 230
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEA3_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.300e-20 Identity = 57/156 (36.54%), Postives = 89/156 (57.05%), Query Frame = 3
Query: 207 NPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANG-SHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAV--------FSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSN 647
NP +++Y W++ LVF + L A++ A N+ S S + F VW +F+++G+SV GT++++KY TPLAVG +G+ MMS MF L +F A A Y G+ +++V FSFF+F+LY FS VL ++R ++ T N
Sbjct: 18 NPKLLITYLWFITLVFGFMYALAAIVAAVNNNGSGEADSKSLGFVGVWAMFLIIGLSVGGTMVMRKYQTPLAVGFFIGVVIMMSLQMFTLSVLF-AGAAYLARQERDKGNTSVSVHSNDAGSIFSFFMFVLYLAFSIVLIKHRNVIIKEGVTLDPN 172
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUR8_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.070e-20 Identity = 55/174 (31.61%), Postives = 93/174 (53.45%), Query Frame = 3
Query: 168 MDNIRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANG-SHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTM-------AVFSFFLFLLYGLFSFVLGRYRTTV----MNTPGTASSNDE 653
+D +R KNP +++Y W+ +VF + + A++ A N+ G S + F VW + +++ +SV GT+++++Y TPLAVG +G+ MMS MF L +F+ A A + T +VFSFF+F+LY + + VL ++R + MN A +ND+
Sbjct: 7 IDEVREKTRKCCKNPKLLITYLWFATIVFGFMYAIAAIVAAVNNNGDGEGDSKSIGFVGVWAMLLIIALSVGGTLVMRRYQTPLAVGFFIGVVMMMSLQMFSLSIIFMGAAYLARIERAKGAEHTNVHSNEAGSVFSFFMFVLYAILTIVLVKHRNIIIKEGMNLGPNALTNDK 180
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Match: Uncharacterized (protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APE9_PLAHL) HSP 1 Score: 94.4 bits (233), Expect = 8.550e-20 Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 3
Query: 159 QDPMDNIRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNDSSANG-SHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA-------DEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSND 650
+D D R + NP +++Y W+ ++F + + A++ A N+ S + F +W + +++ +SV GT++++KY TPLAVG L+G+ MMS MF L +F A A DE D +VFSFF+F+ Y F+ VL R+R V+ G ND
Sbjct: 11 EDASDKARKCIN----NPKMLITYMWFTTILFGFMYAIAAIVAAINNNGEGESDSKSLGFVGIWAMILIVVLSVGGTMVMRKYQTPLAVGFLIGVVLMMSLQMFSLSIIFAGTAYLARIERAKGDEHTNVHSDEAGSVFSFFMFICYFAFAIVLVRHRNIVIKEEGKQDFND 178 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig117.1412.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig117.1412.1 >prot_Ecto-sp9_F_contig117.1412.1 ID=prot_Ecto-sp9_F_contig117.1412.1|Name=mRNA_Ecto-sp9_F_contig117.1412.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=187bp MQSQDPMDNIRSAVEHADKNPSKVVSYSWYLVLVFAAVDILVALINASTNback to top mRNA from alignment at Ecto-sp9_F_contig117:35758..39199- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig117.1412.1 ID=mRNA_Ecto-sp9_F_contig117.1412.1|Name=mRNA_Ecto-sp9_F_contig117.1412.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3442bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:35758..39199- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig117:35758..39199- >mRNA_Ecto-sp9_F_contig117.1412.1 ID=mRNA_Ecto-sp9_F_contig117.1412.1|Name=mRNA_Ecto-sp9_F_contig117.1412.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:35758..39199- (Ectocarpus species9 EcSCA_722f female)back to top |