mRNA_Ecto-sp9_F_contig117.1409.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig117.1409.1
Unique NamemRNA_Ecto-sp9_F_contig117.1409.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig117.1409.1 vs.
Match: Peptidase (S59 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9B1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-7
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 3 
Query:  261 AGFGTSTPFGSNTAQQQTPAFGAASTTFGASATGAFGAK 377
            AG  T+TPFGSNTAQQQTPAFGAASTTFG+S TGAFGAK
Sbjct:   12 AGAPTATPFGSNTAQQQTPAFGAASTTFGSSTTGAFGAK 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig117.1409.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Peptidase1.550e-787.18S59 domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig117contigEcto-sp9_F_contig117:21839..24886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D7FX93
Preferred nameNUP145
KEGG koko:K14297,ko:K18716,ko:K18720
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
GOsGO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003723,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031080,GO:0031081,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031967,GO:0031975,GO:0032386,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0035392,GO:0036228,GO:0040029,GO:0042277,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0045184,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051664,GO:0051668,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.structural constituent of nuclear pore
EggNOG OGsKOG0845@1,KOG0845@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size547
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig117.1409.1prot_Ecto-sp9_F_contig117.1409.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig117 21839..24668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.7473319-CDS-Ecto-sp9_F_contig117:21838..220031622928426.7473319-CDS-Ecto-sp9_F_contig117:21838..22003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 21839..22003 -
1692277867.2324097-CDS-Ecto-sp9_F_contig117:21838..220031692277867.2324097-CDS-Ecto-sp9_F_contig117:21838..22003Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 21839..22003 -
1622928426.7588866-CDS-Ecto-sp9_F_contig117:22478..225821622928426.7588866-CDS-Ecto-sp9_F_contig117:22478..22582Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 22479..22582 -
1692277867.2447526-CDS-Ecto-sp9_F_contig117:22478..225821692277867.2447526-CDS-Ecto-sp9_F_contig117:22478..22582Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 22479..22582 -
1622928426.7690947-CDS-Ecto-sp9_F_contig117:24610..246681622928426.7690947-CDS-Ecto-sp9_F_contig117:24610..24668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 24611..24668 -
1692277867.253795-CDS-Ecto-sp9_F_contig117:24610..246681692277867.253795-CDS-Ecto-sp9_F_contig117:24610..24668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig117 24611..24668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.7816904-UTR-Ecto-sp9_F_contig117:24668..248861622928426.7816904-UTR-Ecto-sp9_F_contig117:24668..24886Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig117 24669..24886 -
1692277867.2694037-UTR-Ecto-sp9_F_contig117:24668..248861692277867.2694037-UTR-Ecto-sp9_F_contig117:24668..24886Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig117 24669..24886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig117.1409.1

>prot_Ecto-sp9_F_contig117.1409.1 ID=prot_Ecto-sp9_F_contig117.1409.1|Name=mRNA_Ecto-sp9_F_contig117.1409.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
MFGAGGGGGFGTSSAGFGTSTPFGSNTAQQQTPAFGAASTTFGASATGAF
GAKPTFGSTTTSGFGAGTSAFGAAKPSVFGAPAAAPAATPAFGAAAPATS
AFGRTTSTT
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mRNA from alignment at Ecto-sp9_F_contig117:21839..24886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig117.1409.1 ID=mRNA_Ecto-sp9_F_contig117.1409.1|Name=mRNA_Ecto-sp9_F_contig117.1409.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3048bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:21839..24886- (Ectocarpus species9 EcSCA_722f female)
TCTTCCAGTGTGCCCCCTCGCGTGAGAGAATCTGGGCGCGCAAAACGTTC
GCCGTTACCCAAGGAGCAGGGGCGCGAGAGGCAAGGAAGCGGAGGTTGAA
AGCCCAGCTAGATACCACTAAGAGAGAGAGAGAGAGAGAGACGGCGTATC
GAAGCTATTAGAAAGAAGACTCGAGGTAGAGGGGAAGAAGACTGCTTGGC
GTTTGCCGCCGGCACACAATGTTTGGTGCAGGGGGAGGAGGGGGCTTCGG
CACCTCTAGCGCGGGCTTCGGGACATGTGAGTTTGGCGGGTGTGACCTGC
TGCTGCCGATCAGGCTTGTTGTCTATCTATTCCAGAGGCCGTCGTTCCTC
TTGCAACGCTGCGACTGACTCTGTTTTTAATAACGGTCCATATCTCTTGT
AGGTTTGAATCATCGTACAGGGGAAGTCCGATCAAACCACAACCAGGCGA
CAGCAGAGTGGTGGGGCGAAGGGGGGGTGAAGTTCACACGCGTAGACGCT
GGCGTCATGCCATCCCATGTGCACCCTTACTGCTCTGTCGGTGCTGTTTA
CTGCTGTGCTGCTCTCGCCCTACCAAACATGTTGTTTCCATTCGTGTTCG
TCGGCCTCTACACTACGAATTACATGTGAAAACGAACAACCAGAATTCAT
TGTCTCTGACAGATGATGAGATATCCCGGCGTTTATTGGGTGTACCAGAC
ATGTACAGCAGCGTAGTTCAAAGCGTCATTGACATGTAACTAGACGCGCC
ATGTGCTTGCAACCGCCATGACGGATGCCCCGAACCGTATATTCTGCTGT
TGGTGCTATCAGTTTTTTTTATTTTTTCTGTCCCTCATGCACACGAATGC
AAGCATGCAGTGTACACGGGGTGGCAGGACGAAACAACTCTTCTCTGCAC
ATATTCGCGTCGATTTGTCGTTTCTTTTCAAGTTTTGCGGCACGTTCCGA
GCGTCGTCGCTCGCACGGCGTATCTTGACACATGCTGCTGTACTCCACAA
GCACACATCTGCACAAGTTATCACGGTTTGCAGCATGGAACCAGGCATAC
TAAAGTTATGTCCTGATGATTGTTCGTTGGTTTGTGGCGCACGGCAGCAA
GTAGCGGTCTTTTTGTCTTTTTCTTACTCCGATTTGTCCTGAATTTGGAA
GAGTAGACGGCATGCACGCGTCCCCCTCTGTTGCTCGGTAGGTAACCTTC
GTGTTCACCAAACTACTGTATGTTTATGGCCTATACCTTGTCTTGGGAGC
CCCCTACAAAGTGGTGTACTCACGGCCTGGTTGGCACCGGTGACATCACT
TCTCCACACACACGTAACATGTGTAGGTCCGGCCTACCTGGTAGAAAGTA
GAGAGACAAGGGTAGGAACGATGCAAGCGTGATGTCTTGACTGCTGTTGT
TTCTTTGGTTCGCTATCCGTCCTGAAGGTCAGTTCCTTCGGTTGTGTTTG
GATGTTTGGATGCACCAGGCGAGGTGGACTACACGGGATGATGTTTTTTT
CCCCTCCGCCTTCCCTCGGTTGCCGTGCTTGCTATCGCAAGAAAGTTCGA
ACCGACTATTTGCCTCGCGGAGCTACATAACGTCGTGTATCGTGTTGTTT
CTCTTTAATTTTTCGTTTTGTAACCATCTCCGGCAAGGCCGGGCAAGAAA
AAATTGGCCAAGAAGAATGACATGCGAAAATCAAGATGGAGCAAGTTGGC
GTTGACCCGGCAGGAGACTTGTACCACTCTGTAGGCTTCTATTCCAGCTG
GCGTGGGTGATTGCTGTGCAAGGACTTACACACAGACGCAGCACTCCAGC
ATCCAGCAGGAGTCACCCAACCCTCGCTAAACAGGCTTCCATCACATCCC
CTCCGAGAATGCTCTTGCGTTAGATTTTCTTCTTTCTATAAATGAAACAC
AAGAGAATTCATGTTGTGTTCCCCACCTTTGCTGCTGAACCGGGCGGGGG
CGCCGGCAGGTGAAACAGAGGCCCCGACACCGACGACTCGAATGGTCGGA
TGTACACCACCAATGATGAAAAAAATATGCATACTTGTACAGAAGGAAGG
ATAGAGTATACAACTGGAGCGTGATATGAGGTCCATCTTGCGGCTTCGGG
TACCGCGTTCAATCGCGCCCCCCCGTCCACTGACACGATATTTTGATCTC
TATCTCTACGCCACGGTTTGATCCCTGTGTGTACCACGCATTGATCCTTA
CAACGCATCCATCCCCTCAACAACTGACCCCCTTTCCACGCGCGCCCGTT
ACCCTCCGCTACAACCGCTCTCTTGTTCCTCGGTGCGGCTGCTCTCCGCT
TCAGCGACCCCCTTCGGCAGCAACACGGCTCAGCAACAGACTCCAGCCTT
CGGGGCAGCGTCGACGACGTTCGGCGCCAGCGCAACCGGCGCTTTCGGCG
CCAAGCCGGTAAGACTACTGCTGTAGCTGTGTAGGATTCCGCGTTTTCAT
TCTGGAAGACTTTTTTCAAAACAGGCTTGTGCTCGGTAGGCGATTGGAGT
ATTTGTTTTGTCGATTTGAGTTATTGTACTGAGGATGGACTGGAAAAACA
AGTTCGTTTATCTCAATCGCAAGCCTACCGAGCACGAGCGCGTTGTTACA
GTCCGTTGTTGCCATTCCGCTTCGGGTTGAACCGAGGGATTGGAACCCAG
TAACATCTGTGTTTCTGTGCCCACGTAGTTCGACGACATGCGAAGAGACA
ATGCAACCGCTCACTTCAGCGATCACGCTAGAGGCATCCAAGAGCGTTCC
GCTTGAACGCCCCTGCAGGAAGCAAATATTTCGTAGCCCACGGACCTCCC
TTGCCCTGTCCGTATTCTATAACCGCCGAGGCGGCATGCAAAACATGAAC
CCCTCCCCGCCCCCCCTCCCTCCCCTGCCACAGACGTTCGGAAGCACCAC
AACCAGCGGCTTCGGGGCCGGCACGAGCGCCTTCGGTGCGGCAAAGCCCA
GCGTTTTCGGCGCCCCCGCCGCGGCCCCGGCCGCCACCCCGGCCTTCGGC
GCCGCGGCCCCCGCCACCTCCGCGTTCGGCCGGACCACGTCCACAACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig117:21839..24886-

>mRNA_Ecto-sp9_F_contig117.1409.1 ID=mRNA_Ecto-sp9_F_contig117.1409.1|Name=mRNA_Ecto-sp9_F_contig117.1409.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig117:21839..24886- (Ectocarpus species9 EcSCA_722f female)
ATGTTTGGTGCAGGGGGAGGAGGGGGCTTCGGCACCTCTAGCGCGGGCTT
CGGGACATATGTTTGGTGCAGGGGGAGGAGGGGGCTTCGGCACCTCTAGC
GCGGGCTTCGGGACATCGACCCCCTTCGGCAGCAACACGGCTCAGCAACA
GACTCCAGCCTTCGGGGCAGCGTCGACGACGTTCGGCGCCAGCGCAACCG
GCGCTTTCGGCGCCAAGCCGCGACCCCCTTCGGCAGCAACACGGCTCAGC
AACAGACTCCAGCCTTCGGGGCAGCGTCGACGACGTTCGGCGCCAGCGCA
ACCGGCGCTTTCGGCGCCAAGCCGACGTTCGGAAGCACCACAACCAGCGG
CTTCGGGGCCGGCACGAGCGCCTTCGGTGCGGCAAAGCCCAGCGTTTTCG
GCGCCCCCGCCGCGGCCCCGGCCGCCACCCCGGCCTTCGGCGCCGCGGCC
CCCGCCACCTCCGCGTTCGGCCGGACCACGTCCACAACGACGTTCGGAAG
CACCACAACCAGCGGCTTCGGGGCCGGCACGAGCGCCTTCGGTGCGGCAA
AGCCCAGCGTTTTCGGCGCCCCCGCCGCGGCCCCGGCCGCCACCCCGGCC
TTCGGCGCCGCGGCCCCCGCCACCTCCGCGTTCGGCCGGACCACGTCCAC
AACG
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