mRNA_Ecto-sp9_F_contig11690.1402.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11690.1402.1
Unique NamemRNA_Ecto-sp9_F_contig11690.1402.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11690.1402.1 vs.
Match: PBPe (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 9.220e-90
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:    1 MVQDTLTLTNVNDSGLQGIALDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDADTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV 423
            M QDTLTL NVNDSGLQGI LDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRD DTVTFCAVNLKPDATHGARFEVISTLDGATL+SEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV
Sbjct:    1 MAQDTLTLANVNDSGLQGIVLDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDVDTVTFCAVNLKPDATHGARFEVISTLDGATLDSEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV 141
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BLAST of mRNA_Ecto-sp9_F_contig11690.1402.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B0_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 3.840e-89
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:    1 MVQDTLTLTNVNDSGLQGIALDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDADTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV 423
            M QDTLTL NVN SGLQGIALDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDADTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV
Sbjct:  227 MAQDTLTLANVNGSGLQGIALDSCPFPRNGSWADGALMRDSLLSASGTLVGATGPLGMSVGEDDDGRDADTVTFCAVNLKPDATHGARFEVISTLDGATLESEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11690.1402.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
PBPe9.220e-9096.45domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.840e-8997.87protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11690contigEcto-sp9_F_contig11690:88..1552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.6
Seed ortholog evalue7.8e-73
Seed eggNOG ortholog2880.D7G1B0
KEGG koko:K05313
KEGG TC1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17
EggNOG free text desc.ionotropic glutamate receptor activity
EggNOG OGsKOG1052@1,KOG1052@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIonotropic glutamate receptor
Ec32 orthologEc-12_005170.1
Exons3
Model size423
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11690.1402.1prot_Ecto-sp9_F_contig11690.1402.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11690 88..1552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928426.4189796-CDS-Ecto-sp9_F_contig11690:87..1831622928426.4189796-CDS-Ecto-sp9_F_contig11690:87..183Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11690 88..183 -
1692277867.0772638-CDS-Ecto-sp9_F_contig11690:87..1831692277867.0772638-CDS-Ecto-sp9_F_contig11690:87..183Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11690 88..183 -
1622928426.433703-CDS-Ecto-sp9_F_contig11690:776..10351622928426.433703-CDS-Ecto-sp9_F_contig11690:776..1035Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11690 777..1035 -
1692277867.0900598-CDS-Ecto-sp9_F_contig11690:776..10351692277867.0900598-CDS-Ecto-sp9_F_contig11690:776..1035Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11690 777..1035 -
1622928426.4459295-CDS-Ecto-sp9_F_contig11690:1484..15521622928426.4459295-CDS-Ecto-sp9_F_contig11690:1484..1552Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11690 1485..1552 -
1692277867.0984802-CDS-Ecto-sp9_F_contig11690:1484..15521692277867.0984802-CDS-Ecto-sp9_F_contig11690:1484..1552Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11690 1485..1552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11690.1402.1

>prot_Ecto-sp9_F_contig11690.1402.1 ID=prot_Ecto-sp9_F_contig11690.1402.1|Name=mRNA_Ecto-sp9_F_contig11690.1402.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=141bp
MVQDTLTLTNVNDSGLQGIALDSCPFPRNGSWADGALMRDSLLSASGTLV
GATGPLGMSVGEDDDGRDADTVTFCAVNLKPDATHGARFEVISTLDGATL
ESEDGEGFQAISPFQEAQTFPAGALTYPPDRPILQGRHMDV
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mRNA from alignment at Ecto-sp9_F_contig11690:88..1552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11690.1402.1 ID=mRNA_Ecto-sp9_F_contig11690.1402.1|Name=mRNA_Ecto-sp9_F_contig11690.1402.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1465bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11690:88..1552- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCAGGACACGCTCACTTTGACGAACGTGAACGACTCGGGACTCCA
AGGGATAGCGCTCGATAGGTGAGAAGCAGAACCGTCACAAGTGCTTGGAG
TTTTTTTTTCTGTTTTGTCAGCGCGTGAGGTGTGTGTCTATTTTTTTTCA
TTGTTAGCATCGACCTCGCTAACCGGATGATCAATGAAAACAAGTCAGTC
TTGTACAAATAGTGTGTATATTTTATTTTGTTTTGTTTTCTCGGCATCGG
CCGCCCTACATAACCAAAGCTGGGGCATGAGTGTCGGGCGGGAATAGATA
TAATCACGGTGCTCCGAAAGGGGCGTGCGTGAGGAGGTGTGTTTGCCGCC
AGGGGGGGTATGTTGTGGTACAGCCCGCTTGCCTTCCTCCTTCCCCCCTT
GCTCCTCTCGTGTGCGTCCACATCCATCTCAACCGACCTCAAAACCCGAT
AATAGTCACGCCCGCCCCCACCTGCTGTCCCCACGCTGGTGACCACCGCC
GCCGCGAAACCCCCCAGCTGCCCGTTTCCGAGGAACGGTTCCTGGGCGGA
CGGCGCCTTGATGCGCGACTCCCTGCTGTCCGCGTCGGGTACCCTGGTCG
GAGCCACGGGGCCCCTGGGCATGTCCGTCGGGGAGGACGACGACGGGAGG
GACGCGGACACGGTCACCTTCTGCGCGGTCAACCTCAAGCCGGACGCCAC
CCACGGGGCGAGGTTCGAGGTGATCAGCACGCTGGACGGCGCGACCCTCG
AGAGCGAGGACGGCGAGGGCTTCCAGGTGCGCGTTGGTGGGCGCTTGTTT
GTGGTGGTTGGGCGGCAGTCTTTGGGGGAGGGGGGGCGGGTTATGCTGGG
GGGGAGATGGAGAGGTTTTTCGCGGCGGGGAGGTATGTTTTTGGTATTGC
GTTACCGCCTGAGTCCGTGTCTACCACCCCCATCCCCCCCCTATGCGATA
ATGCTGTCGCTCCTTTTTCTCTCTGTTTGGATCACAGACAGGTTGTTGTC
AGAAGCGCAGAGAGAAACTGTGGACCCCAGGAGCTTGAAATATAATACTC
CTTTTAGAGAGGAGTGGAGTAGAGAGAGAGAGAACGCGGGAACCCCTGCT
GGAGGGGCCGTCGCCGAACGGCCCTACCGACACAAATCCACGTTGATCCC
CATTATCCTCTCAGATCAGTATCGAGTGTCGAACATCCGAAATAGTCCCT
TTTGTCCACATGTTCGGCCGCTTGGACCCGCCTTGGACCCGCCTTCGTGA
TCTAGACTACGATGTCCCATATGTGCTTAATTTTGGTACCCTTGCTAGAT
ATTTCTCTTGCCCCTCTCGTGCCTCCCCGTTGTGACCTCTCTCGGCGCGA
TACATGCCACGTACCGCAGGCCATCAGCCCGTTCCAGGAGGCGCAGACTT
TCCCCGCTGGCGCCCTGACGTACCCGCCCGACCGTCCTATCCTGCAGGGT
CGACATATGGATGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11690:88..1552-

>mRNA_Ecto-sp9_F_contig11690.1402.1 ID=mRNA_Ecto-sp9_F_contig11690.1402.1|Name=mRNA_Ecto-sp9_F_contig11690.1402.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11690:88..1552- (Ectocarpus species9 EcSCA_722f female)
ATGGTGCAGGACACGCTCACTTTGACGAACGTGAACGACTCGGGACTCCA
AGGGATAGCGCTCGATAGATGGTGCAGGACACGCTCACTTTGACGAACGT
GAACGACTCGGGACTCCAAGGGATAGCGCTCGATAGCTGCCCGTTTCCGA
GGAACGGTTCCTGGGCGGACGGCGCCTTGATGCGCGACTCCCTGCTGTCC
GCGTCGGGTACCCTGGTCGGAGCCACGGGGCCCCTGGGCATGTCCGTCGG
GGAGGACGACGACGGGAGGGACGCGGACACGGTCACCTTCTGCGCGGTCA
ACCTCAAGCCGGACGCCACCCACGGGGCGAGGTTCGAGGTGATCAGCACG
CTGGACGGCGCGACCCTCGAGAGCGAGGACGGCGAGGGCTTCCAGCTGCC
CGTTTCCGAGGAACGGTTCCTGGGCGGACGGCGCCTTGATGCGCGACTCC
CTGCTGTCCGCGTCGGGTACCCTGGTCGGAGCCACGGGGCCCCTGGGCAT
GTCCGTCGGGGAGGACGACGACGGGAGGGACGCGGACACGGTCACCTTCT
GCGCGGTCAACCTCAAGCCGGACGCCACCCACGGGGCGAGGTTCGAGGTG
ATCAGCACGCTGGACGGCGCGACCCTCGAGAGCGAGGACGGCGAGGGCTT
CCAGGCCATCAGCCCGTTCCAGGAGGCGCAGACTTTCCCCGCTGGCGCCC
TGACGTACCCGCCCGACCGTCCTATCCTGCAGGGTCGACATATGGATGTG
GCCATCAGCCCGTTCCAGGAGGCGCAGACTTTCCCCGCTGGCGCCCTGAC
GTACCCGCCCGACCGTCCTATCCTGCAGGGTCGACATATGGATGTG
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