mRNA_Ecto-sp9_F_contig1167.1384.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1167.1384.1
Unique NamemRNA_Ecto-sp9_F_contig1167.1384.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1167.1384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE3_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.310e-52
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:    1 GVSEELEALMSTPLEVTVKKSVRKTTVTTGEGKASFEVTEVSVSFPEMPEAYPKNWTTFCVEGKMESIEAFLGGKGKPLVALLSLRGALQVGYPHFVQMISTR 309
             VSE LEALMSTPLEVTVKKSVRKTTVTT EGKASFEVTEVSVSFPEMPE YPKNWTTFCVEGKM SIEAFLG KGKPLVALLSLRGALQVGYPHFVQMIST+
Sbjct:  110 AVSEGLEALMSTPLEVTVKKSVRKTTVTTREGKASFEVTEVSVSFPEMPETYPKNWTTFCVEGKMTSIEAFLGSKGKPLVALLSLRGALQVGYPHFVQMISTQ 212
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BLAST of mRNA_Ecto-sp9_F_contig1167.1384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ5_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 5.360e-9
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 GVSEELEALMSTPLEVTVKKSVRKTTVTTGEGKASFEVT 117
            GVSEELEALMSTPLEV VKKSVRKTTVT GE KASFEVT
Sbjct:  110 GVSEELEALMSTPLEVAVKKSVRKTTVTAGERKASFEVT 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1167.1384.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.310e-5293.20protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.360e-992.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1167contigEcto-sp9_F_contig1167:21699..23922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000950.1
Exons2
Model size1517
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1167.1384.1prot_Ecto-sp9_F_contig1167.1384.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1167 22904..23895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928424.6359682-UTR-Ecto-sp9_F_contig1167:21698..229031622928424.6359682-UTR-Ecto-sp9_F_contig1167:21698..22903Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1167 21699..22903 -
1692277866.305699-UTR-Ecto-sp9_F_contig1167:21698..229031692277866.305699-UTR-Ecto-sp9_F_contig1167:21698..22903Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1167 21699..22903 -
1622928424.6769543-UTR-Ecto-sp9_F_contig1167:23895..239221622928424.6769543-UTR-Ecto-sp9_F_contig1167:23895..23922Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1167 23896..23922 -
1692277866.333414-UTR-Ecto-sp9_F_contig1167:23895..239221692277866.333414-UTR-Ecto-sp9_F_contig1167:23895..23922Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1167 23896..23922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928424.6489258-CDS-Ecto-sp9_F_contig1167:22903..230971622928424.6489258-CDS-Ecto-sp9_F_contig1167:22903..23097Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 22904..23097 -
1692277866.3149242-CDS-Ecto-sp9_F_contig1167:22903..230971692277866.3149242-CDS-Ecto-sp9_F_contig1167:22903..23097Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 22904..23097 -
1622928424.664777-CDS-Ecto-sp9_F_contig1167:23804..238951622928424.664777-CDS-Ecto-sp9_F_contig1167:23804..23895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 23805..23895 -
1692277866.3240943-CDS-Ecto-sp9_F_contig1167:23804..238951692277866.3240943-CDS-Ecto-sp9_F_contig1167:23804..23895Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 23805..23895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1167.1384.1

>prot_Ecto-sp9_F_contig1167.1384.1 ID=prot_Ecto-sp9_F_contig1167.1384.1|Name=mRNA_Ecto-sp9_F_contig1167.1384.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=95bp
MSTPLEVTVKKSVRKTTVTTGEGKASFEVTEVSVSFPEMPEAYPKNWTTF
CVEGKMESIEAFLGGKGKPLVALLSLRGALQVGYPHFVQMISTR*
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mRNA from alignment at Ecto-sp9_F_contig1167:21699..23922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1167.1384.1 ID=mRNA_Ecto-sp9_F_contig1167.1384.1|Name=mRNA_Ecto-sp9_F_contig1167.1384.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2224bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1167:21699..23922- (Ectocarpus species9 EcSCA_722f female)
GGGGTGTCCGAAGAATTGGAGGCGTTAATGAGCACGCCTTTAGAGGTTAC
CGTGAAGAAGTCGGTGCGGAAGACGACGGTGACAACCGGGGAGGGGAAGG
CGAGCTTTGAAGTCACAGGTGTGTTTGTGGGTATGTTGTCGTTGCGGTCT
CATCCTTACGATGATGTGTTGGTCTCCGCTAACCTGCGGTACCATCACTA
TGTTCTAACCCTAACCCTAAGGTTTCATGTATGCTCGAGTGTGCCCGAAG
TCGACTGGCAATGATGTCAATCCTTCACGACTGCTGTAAGCTTGGCATGT
ATATATGACAGAAGTCCGTTGCATGGAATTGCGGAACCACACTCCGAGAG
GAGATTCTTGCTGTCGTCCCGGAGACCGTACCGTAGATTGCGTAAGATAA
CACACCCCTGTACCACTTTTTAGTGCTCGATTGTTCCACGAGGAGGAGGA
TGCCAAAATTAAACGATTCCTTGTTGGAGTGCTCTCGACGAGATGGTTAT
GACACCTCCAGTTTCGGCACAGTCAAAATATTCTTCTTGCTGAGTATTTG
AGCTTTAAAAAGGTCAAATGTGTGTGGAATCTTGATGTTTTTGCCATCTA
CGGTACAACATACAAAGGTAAACGACCTCCAGTCATTGAATGTTGAAACA
AAACAACATGCCCAAACCTGCCTGCCGTCTACACATCGCGTAATTCCTGC
GTGTGTTTGTCCTGCACCTCTGAGATGAGGCGCAAAATTTCCCGAAAGCC
GGCGCGATTATTATCCAGCCCGTGGTGACCTTGCCCCCCTCCCCATGCCG
CATCGACAACTCGATATGCGAGAAGAGGTGTCGGTGAGCTTTCCCGAGAT
GCCGGAGGCGTACCCGAAGAACTGGACCACGTTCTGCGTGGAGGGGAAAA
TGGAAAGCATAGAGGCGTTCTTGGGGGGCAAGGGTAAGCCCCTGGTTGCC
CTGCTATCACTCAGGGGGGCGCTGCAGGTCGGATACCCGCACTTCGTTCA
GATGATTTCGACGCGATGAGTGGTTTTTTCTTGGCCTGAGAGACGGGCAG
TATTTAACGTGCGATAATGTGCCTGGTGTTAAACATTTGTTGTTGTCGTT
GTTGTTGCTAGGCAGGGAAGTCGGGGAAGCCCTGCAAGAGTACGGTAGAT
TAGTATGGCGTTTGTTCACGGAATGATATTGTCTCCGTCGTTCGAAAGAT
CTACGTAGATGCGCCGTTGTGTTTGTTGTACAGGAAGAAGGTCGGGGCTG
GCTTTGCATCAGGGTGAGGTAGTCACCCGCAGCAGGTCGTGCAGATATCA
TCGACAGGGCACGTCGGGTCGTCATTCGACACGCGTTTACACCGTCCAAT
GTTCTATTTCGGTGGGCTAGCCAAGTGTGGTTTTGTTTTCACTGCTGGCA
GGCACGGCTTTGGCAGGCGAGTTTTTCGCGCGGCTGGGTGGCAATTGATG
CAGTAGTATACGCTAGAAGCAGACCTCTGTGTACCGACGGAACTCGACGT
GCTCCCGTTGCAGCAATTGTCTACAAAACGAGAGGCTGTTGGTTTGTTTC
TTGCTGAACGAGAGGGAGAGGCTCCCAGCGGGGAATTTCGTGCTGTTCTT
CAGCATGAGTTGTGAGTTTGTCTGTTTCTACTCATGTTTTCTGGATGCTA
CCTGCGCCAACACCTCTCGGTGACTTTCTGGGCTTGCCAGCCGGGGCCTC
GCAGAGGTACAACAGGCCAATTTTCATCTCGATCAAGGTTCAGGGGACCT
TTGTGGACCGGGTGGGAACACGTGGATTTGGGGTGGTTGCACTGATGGAA
TGGGTCGTTTCTGAACTTGTTGAAAAGCGCAACTATATCCATTTGGGGCC
GCATATGGCTCAAGGCGAAGTCGGGGCCCCGCAGATTCCCCTAGGGGACG
AATTGACGTATTTTTAGTATCGACTGGCTGAGCCATTTGTGTCCTTGTTC
AAAGGGAAGGACTTGCTGATAGTCACAAGTGCGTGCATGTGTCATTTTTG
AACTGTATTGTGTTGTCGTGTGTTCGGCGAGATTTGCTTGGTCCATGGGC
AAGTCATGTTCGGTGGTTTTTCTTGGCGAACCCCGGGGCATTTCGTACAG
ACACCGATCGCCAGGCGACAAGAAACGGAAAGTGTTTTTGTTTTGTGTGT
GAGAGGACTTGGAAGTTTGTACCCTTGATGCCCATGTCAATTTTGACGGC
ACACACGTGTTGGTGCATGGTAAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1167:21699..23922-

>mRNA_Ecto-sp9_F_contig1167.1384.1 ID=mRNA_Ecto-sp9_F_contig1167.1384.1|Name=mRNA_Ecto-sp9_F_contig1167.1384.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1167:21699..23922- (Ectocarpus species9 EcSCA_722f female)
ATGAGCACGCCTTTAGAGGTTACCGTGAAGAAGTCGGTGCGGAAGACGAC
GGTGACAACCGGGGAGGGGAAGGCGAGCTTTGAAGTCACAGATGAGCACG
CCTTTAGAGGTTACCGTGAAGAAGTCGGTGCGGAAGACGACGGTGACAAC
CGGGGAGGGGAAGGCGAGCTTTGAAGTCACAGAGGTGTCGGTGAGCTTTC
CCGAGATGCCGGAGGCGTACCCGAAGAACTGGACCACGTTCTGCGTGGAG
GGGAAAATGGAAAGCATAGAGGCGTTCTTGGGGGGCAAGGGTAAGCCCCT
GGTTGCCCTGCTATCACTCAGGGGGGCGCTGCAGGTCGGATACCCGCACT
TCGTTCAGATGATTTCGACGCGATGAAGGTGTCGGTGAGCTTTCCCGAGA
TGCCGGAGGCGTACCCGAAGAACTGGACCACGTTCTGCGTGGAGGGGAAA
ATGGAAAGCATAGAGGCGTTCTTGGGGGGCAAGGGTAAGCCCCTGGTTGC
CCTGCTATCACTCAGGGGGGCGCTGCAGGTCGGATACCCGCACTTCGTTC
AGATGATTTCGACGCGATGA
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