mRNA_Ecto-sp9_F_contig1167.1383.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1167.1383.1
Unique NamemRNA_Ecto-sp9_F_contig1167.1383.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1167.1383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.230e-30
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:  331 MQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEDFNQDLRWVL 519
            MQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLE FNQDLRWVL
Sbjct:    1 MQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEGFNQDLRWVL 63
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BLAST of mRNA_Ecto-sp9_F_contig1167.1383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK24_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.260e-29
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:  331 MQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEDFNQDLRWVL 519
            MQGGASTWDE+GGICVRLARYQRVLHVVWAALGVSIQRIVSWPGG  RLTFLEDF+QDLRWVL
Sbjct:    1 MQGGASTWDEEGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGEGRLTFLEDFDQDLRWVL 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1167.1383.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.230e-3098.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.260e-2993.65protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1167contigEcto-sp9_F_contig1167:15582..19030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1638
Cds size1638
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1167.1383.1prot_Ecto-sp9_F_contig1167.1383.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1167 15582..19030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928424.187298-CDS-Ecto-sp9_F_contig1167:15581..165831622928424.187298-CDS-Ecto-sp9_F_contig1167:15581..16583Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 15582..16583 +
1692277866.0692642-CDS-Ecto-sp9_F_contig1167:15581..165831692277866.0692642-CDS-Ecto-sp9_F_contig1167:15581..16583Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 15582..16583 +
1622928424.1988676-CDS-Ecto-sp9_F_contig1167:17248..174241622928424.1988676-CDS-Ecto-sp9_F_contig1167:17248..17424Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 17249..17424 +
1692277866.0770977-CDS-Ecto-sp9_F_contig1167:17248..174241692277866.0770977-CDS-Ecto-sp9_F_contig1167:17248..17424Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 17249..17424 +
1622928424.211204-CDS-Ecto-sp9_F_contig1167:17915..180151622928424.211204-CDS-Ecto-sp9_F_contig1167:17915..18015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 17916..18015 +
1692277866.084896-CDS-Ecto-sp9_F_contig1167:17915..180151692277866.084896-CDS-Ecto-sp9_F_contig1167:17915..18015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 17916..18015 +
1622928424.2347162-CDS-Ecto-sp9_F_contig1167:18281..184671622928424.2347162-CDS-Ecto-sp9_F_contig1167:18281..18467Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 18282..18467 +
1692277866.0928805-CDS-Ecto-sp9_F_contig1167:18281..184671692277866.0928805-CDS-Ecto-sp9_F_contig1167:18281..18467Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 18282..18467 +
1622928424.2506797-CDS-Ecto-sp9_F_contig1167:18856..190301622928424.2506797-CDS-Ecto-sp9_F_contig1167:18856..19030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 18857..19030 +
1692277866.1014652-CDS-Ecto-sp9_F_contig1167:18856..190301692277866.1014652-CDS-Ecto-sp9_F_contig1167:18856..19030Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1167 18857..19030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1167.1383.1

>prot_Ecto-sp9_F_contig1167.1383.1 ID=prot_Ecto-sp9_F_contig1167.1383.1|Name=mRNA_Ecto-sp9_F_contig1167.1383.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=546bp
MTPSCPHPPSATITSLAALQLAFTSGYEGHHQPQLVSLDNCNACRESVAI
RLRLTDRMPPSLSALFFDPPHVTIAEQLKNKHVGENGNATATTTRGGILS
VTPVSSPELSMQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIV
SWPGGVRRLTFLEDFNQDLRWVLWPEGLRELTFREGFNQPIEDVVFPKGL
ERLSLGADFNQDIQNASFPPALTFLSLGASFNHPLEGAELPKSLQRLVWG
QLFDQPVETVRWPPALQSIAFGDAFNNPVEQAEFPARVQSLQLGKAFDQQ
VERVAWPQRLESLSFGHDFNHPVAGMAWPEGVKEVSFGYSFDKPLSGVRW
PPYLESVIFGFRFNKSLDNVTWPALCRSIQLGESFNLPLHGISWPQGLLE
LDLGDDFNHPLEGVTLPAGLERLYLSVFFNQPVVAVKWPEGLLELDFGLN
FNMPIEGTSFPRGLQSVCFGRCFNQDVTRVSWPEELTRIAFGRAFVGALE
GDSWPPPKLEVLDLGSKFHAKHRIDESSLRHGCQVFYLYVPGSDY*
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mRNA from alignment at Ecto-sp9_F_contig1167:15582..19030+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1167.1383.1 ID=mRNA_Ecto-sp9_F_contig1167.1383.1|Name=mRNA_Ecto-sp9_F_contig1167.1383.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3449bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1167:15582..19030+ (Ectocarpus species9 EcSCA_722f female)
ATGACGCCATCATGTCCTCACCCACCGTCGGCCACAATAACGTCACTAGC
GGCGCTTCAGCTAGCGTTCACTTCTGGATACGAGGGCCATCACCAGCCGC
AGTTGGTATCTCTCGACAACTGCAATGCCTGTCGCGAATCGGTGGCCATC
CGTTTACGTCTCACAGACCGCATGCCGCCGTCCCTCAGCGCCTTGTTCTT
CGACCCTCCACACGTGACGATTGCAGAGCAGCTTAAGAACAAGCACGTCG
GCGAAAATGGCAACGCCACCGCCACCACGACCAGGGGCGGAATATTGTCT
GTCACGCCCGTCTCTTCGCCAGAACTATCGATGCAGGGTGGCGCGAGCAC
CTGGGATGAGAAAGGGGGGATATGTGTTCGGCTTGCGAGATACCAAAGGG
TGTTGCATGTTGTGTGGGCGGCTCTGGGCGTATCGATTCAACGCATTGTG
TCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGGAGGACTTCAACCA
AGACCTACGGTGGGTGCTATGGCCAGAGGGACTGCGCGAGCTGACCTTTC
GAGAGGGGTTCAACCAGCCCATAGAGGACGTAGTCTTTCCAAAGGGCCTG
GAGAGACTGTCCCTTGGTGCGGATTTCAACCAGGATATTCAAAATGCATC
GTTTCCTCCTGCACTAACGTTCTTGTCCCTGGGGGCGTCGTTCAACCATC
CTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAAAGGCTTGTGTGGGGA
CAGCTATTCGACCAGCCGGTTGAAACGGTTCGCTGGCCGCCGGCGTTGCA
GAGCATCGCCTTCGGTGACGCGTTCAATAACCCCGTCGAGCAGGCTGAGT
TTCCGGCACGAGTGCAGTCCCTTCAACTTGGAAAAGCATTCGATCAGCAA
GTTGAACGAGTGGCATGGCCTCAACGCCTAGAGAGCCTGTCATTCGGACA
TGACTTCAACCACCCAGTGGCGGGGATGGCATGGCCGGAGGGCGTGAAAG
AGGTGCGTGTACTCTGGGAGTAGCGCGCGTTTTAGTTGGCGACTCTATCT
CACACGAGTGTTTTTGATACCGCAGGACACCAACCAGTATATACTGTAGT
TCGTTTTGCGTGAAGGGCGGTGGACCGTTCAATGTGTTGGGAGTTGTAGT
ATCTGCCGCTACAACGCAAAAAGACTACTGCGCAGTATCGCCGCACTTTC
GGGAGCTTCGGTGATTGTTCCGTGGGCTGCCCATGGAACAAAAGCAAACT
CCTAGTAGTGTAGCAGACTGAAACAAAGTATCCATGCACGGTTACATACG
CGTACTTCACGTTGAAGTGAAGAAATATCAAATCGAACATTGATCCCAAG
TCGGTGTGCAGAAGCTCAATCGTTCAGTTGATGAAACGGGCGTGCATCGA
CCAGGAACTTCAATTTGCCCACCGCTGCCAGCCAACAAACAGCTGAGCGT
GCAACACAGTTGGCCTAGAGGCAGCGGTCCGACAAATGATACCAGTATCC
ACGTAGCCACGAGTCACGGCAGCAGCGGAGGCCATCACAAAACCAGCAAC
AACTTTACAACATCGCTCAACCGTAACCCACGACAAAGAACACGCCGCCA
AACGTGAGGTCCTCAGGAACGATCCACGAAGCCGTTTTTGGTGGCGACCG
CTACTGACAATGCGCAGGTCTCCTTTGGGTACAGCTTTGACAAACCGCTG
TCGGGAGTGAGGTGGCCACCTTACCTTGAGAGCGTCATTTTCGGCTTCCG
CTTCAACAAGTCCCTCGACAACGTCACGTGGCCCGCGCTCTGCCGCTCCA
TTCAGCTCGGAGAGTCCTTCAACCTTCCTCTGCACGGCATAAGGTATGAC
GGTGGTCAAGCAGCTGCTAGGAAGGCAAATGACAACATAGCCAAACCGGT
ACCGCAACCAGATGGTGTAGGCCAAGGGCATTGAAAATTATGGGGGCGGC
GTAAATCACAACAGCCATCTTTGGCGGCTCCCTTAGACAAACCGATTATT
GCATTAATCGAGATATAAGCGAGCCCCTCGCAGTCGCCACTACTTCGGCC
AAAACACGCCACGGTGCCGCGGTTCAAACAGACAAGGGCCGCACGTGGCC
GTCTGACTCCCCCCATTCTGCTTGCCCCTGACGGTGAAAGATGCGGCACG
TGGTTGCTTGCAGATGGTCCCAACAACGAGAGCCGTCGAGCTTATGGGGT
TTCGGGTTAGGGTACATGGGCATCCCTCAAATGATGAAGGCAGGCACGGA
AAAAAACAAAACATAAGAACGTACCCCCCGACGGCTACAACTGTACCCCG
TGTATATCCTATTCTGGTCTTGTTCCGAAACCAGTTGGCCGCAAGGGCTG
CTCGAGTTGGACCTGGGGGATGACTTCAACCACCCTTTGGAAGGCGTTAC
TCTGCCAGCGGGGTTGGAACGGCTCTACCTCTCGGTGCGCCTGCTTTCAG
TGAAAACACCGTGTTTGTTGGCGACCGCGGTCTAGGGGCGGGTCATTGCT
GTAGTTGCTGTTGACACTATTGCAGCTGTTGCTGGTTGTATTGGTCCGTT
CTCGCGCACGTCATCTATACCTCGTCGGCGTCGTGTGCCTACATACGTGT
GGCGGTGGGGGTATGACTGGGAAAGCTCCGAGGTCGCGTTTCTATCGCGA
AAACACCAAAATTTGCCGCACTCTGATAGTTATTTCCTTCTTCGATGAAG
GTGTTCTTCAACCAGCCTGTGGTCGCGGTTAAGTGGCCGGAAGGACTGCT
CGAGCTCGATTTCGGGCTGAATTTCAACATGCCAATCGAGGGCACATCGT
TTCCCCGGGGATTGCAGTCGGTGTGCTTCGGCCGGTGCTTCAATCAGGAC
GTCACCCGCGTTTCGTGGCCCGAGGAATTGACTCGGGTAACATGTGTTGT
TGTTGAAGTTGATGTTGTTGTTGTTTATGTTCTTGTTTTTATTCTTGTTC
TTGTTGATGTTCTTGTTGATTATATTGCTGATTTCGATCGCAAAGTTACC
CTGACCAGCCACACACCTGTACGTGGTCTTTCCTCCAGCGTGACCCCGGT
TGACATATTCACCAAACCCTACAGCGCAGGCACGGAGTAAACTCCCTTCA
TACTCCCATTTCCAAATAACGCGTGAAAGCCCCTCCACGAATTGTCTCTC
CTCCATAGGTCGTCCAAATGATCTTGGGGACAGACATGTGCGTTAAGCAT
AAGTACAACCCACGAGCGTGCTCCCTGCACAATGTACCTTCCCTCCCTCT
ATCGAAAAACGCCACATCTGTGTAGATCGCCTTCGGACGAGCGTTCGTCG
GGGCCCTCGAGGGAGACTCCTGGCCACCCCCGAAGCTGGAAGTATTGGAC
CTGGGCAGCAAGTTCCACGCGAAGCATCGAATTGACGAGTCCAGTCTTCG
GCACGGATGTCAGGTGTTTTACCTCTATGTTCCCGGCAGCGACTACTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1167:15582..19030+

>mRNA_Ecto-sp9_F_contig1167.1383.1 ID=mRNA_Ecto-sp9_F_contig1167.1383.1|Name=mRNA_Ecto-sp9_F_contig1167.1383.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3276bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1167:15582..19030+ (Ectocarpus species9 EcSCA_722f female)
ATGACGCCATCATGTCCTCACCCACCGTCGGCCACAATAACGTCACTAGC
GGCGCTTCAGCTAGCGTTCACTTCTGGATACGAGGGCCATCACCAGCCGC
AGTTGGTATCTCTCGACAACTGCAATGCCTGTCGCGAATCGGTGGCCATC
CGTTTACGTCTCACAGACCGCATGCCGCCGTCCCTCAGCGCCTTGTTCTT
CGACCCTCCACACGTGACGATTGCAGAGCAGCTTAAGAACAAGCACGTCG
GCGAAAATGGCAACGCCACCGCCACCACGACCAGGGGCGGAATATTGTCT
GTCACGCCCGTCTCTTCGCCAGAACTATCGATGCAGGGTGGCGCGAGCAC
CTGGGATGAGAAAGGGGGGATATGTGTTCGGCTTGCGAGATACCAAAGGG
TGTTGCATGTTGTGTGGGCGGCTCTGGGCGTATCGATTCAACGCATTGTG
TCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGGAGGACTTCAACCA
AGACCTACGGTGGGTGCTATGGCCAGAGGGACTGCGCGAGCTGACCTTTC
GAGAGGGGTTCAACCAGCCCATAGAGGACGTAGTCTTTCCAAAGGGCCTG
GAGAGACTGTCCCTTGGTGCGGATTTCAACCAGGATATTCAAAATGCATC
GTTTCCTCCTGCACTAACGTTCTTGTCCCTGGGGGCGTCGTTCAACCATC
CTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAAAGGCTTGTGTGGGGA
CAGCTATTCGACCAGCCGGTTGAAACGGTTCGCTGGCCGCCGGCGTTGCA
GAGCATCGCCTTCGGTGACGCGTTCAATAACCCCGTCGAGCAGGCTGAGT
TTCCGGCACGAGTGCAGTCCCTTCAACTTGGAAAAGCATTCGATCAGCAA
GTTGAACGAGTGGCATGGCCTCAACGCCTAGAGAGCCTGTCATTCGGACA
TGACTTCAACCACCCAGTGGCGGGGATGGCATGGCCGGAGGGCGTGAAAG
AGATGACGCCATCATGTCCTCACCCACCGTCGGCCACAATAACGTCACTA
GCGGCGCTTCAGCTAGCGTTCACTTCTGGATACGAGGGCCATCACCAGCC
GCAGTTGGTATCTCTCGACAACTGCAATGCCTGTCGCGAATCGGTGGCCA
TCCGTTTACGTCTCACAGACCGCATGCCGCCGTCCCTCAGCGCCTTGTTC
TTCGACCCTCCACACGTGACGATTGCAGAGCAGCTTAAGAACAAGCACGT
CGGCGAAAATGGCAACGCCACCGCCACCACGACCAGGGGCGGAATATTGT
CTGTCACGCCCGTCTCTTCGCCAGAACTATCGATGCAGGGTGGCGCGAGC
ACCTGGGATGAGAAAGGGGGGATATGTGTTCGGCTTGCGAGATACCAAAG
GGTGTTGCATGTTGTGTGGGCGGCTCTGGGCGTATCGATTCAACGCATTG
TGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGGAGGACTTCAAC
CAAGACCTACGGTGGGTGCTATGGCCAGAGGGACTGCGCGAGCTGACCTT
TCGAGAGGGGTTCAACCAGCCCATAGAGGACGTAGTCTTTCCAAAGGGCC
TGGAGAGACTGTCCCTTGGTGCGGATTTCAACCAGGATATTCAAAATGCA
TCGTTTCCTCCTGCACTAACGTTCTTGTCCCTGGGGGCGTCGTTCAACCA
TCCTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAAAGGCTTGTGTGGG
GACAGCTATTCGACCAGCCGGTTGAAACGGTTCGCTGGCCGCCGGCGTTG
CAGAGCATCGCCTTCGGTGACGCGTTCAATAACCCCGTCGAGCAGGCTGA
GTTTCCGGCACGAGTGCAGTCCCTTCAACTTGGAAAAGCATTCGATCAGC
AAGTTGAACGAGTGGCATGGCCTCAACGCCTAGAGAGCCTGTCATTCGGA
CATGACTTCAACCACCCAGTGGCGGGGATGGCATGGCCGGAGGGCGTGAA
AGAGGTCTCCTTTGGGTACAGCTTTGACAAACCGCTGTCGGGAGTGAGGT
GGCCACCTTACCTTGAGAGCGTCATTTTCGGCTTCCGCTTCAACAAGTCC
CTCGACAACGTCACGTGGCCCGCGCTCTGCCGCTCCATTCAGCTCGGAGA
GTCCTTCAACCTTCCTCTGCACGGCATAAGGTCTCCTTTGGGTACAGCTT
TGACAAACCGCTGTCGGGAGTGAGGTGGCCACCTTACCTTGAGAGCGTCA
TTTTCGGCTTCCGCTTCAACAAGTCCCTCGACAACGTCACGTGGCCCGCG
CTCTGCCGCTCCATTCAGCTCGGAGAGTCCTTCAACCTTCCTCTGCACGG
CATAAGTTGGCCGCAAGGGCTGCTCGAGTTGGACCTGGGGGATGACTTCA
ACCACCCTTTGGAAGGCGTTACTCTGCCAGCGGGGTTGGAACGGCTCTAC
CTCTCGTTGGCCGCAAGGGCTGCTCGAGTTGGACCTGGGGGATGACTTCA
ACCACCCTTTGGAAGGCGTTACTCTGCCAGCGGGGTTGGAACGGCTCTAC
CTCTCGGTGTTCTTCAACCAGCCTGTGGTCGCGGTTAAGTGGCCGGAAGG
ACTGCTCGAGCTCGATTTCGGGCTGAATTTCAACATGCCAATCGAGGGCA
CATCGTTTCCCCGGGGATTGCAGTCGGTGTGCTTCGGCCGGTGCTTCAAT
CAGGACGTCACCCGCGTTTCGTGGCCCGAGGAATTGACTCGGGTGTTCTT
CAACCAGCCTGTGGTCGCGGTTAAGTGGCCGGAAGGACTGCTCGAGCTCG
ATTTCGGGCTGAATTTCAACATGCCAATCGAGGGCACATCGTTTCCCCGG
GGATTGCAGTCGGTGTGCTTCGGCCGGTGCTTCAATCAGGACGTCACCCG
CGTTTCGTGGCCCGAGGAATTGACTCGGATCGCCTTCGGACGAGCGTTCG
TCGGGGCCCTCGAGGGAGACTCCTGGCCACCCCCGAAGCTGGAAGTATTG
GACCTGGGCAGCAAGTTCCACGCGAAGCATCGAATTGACGAGTCCAGTCT
TCGGCACGGATGTCAGGTGTTTTACCTCTATGTTCCCGGCAGCGACTACT
AAATCGCCTTCGGACGAGCGTTCGTCGGGGCCCTCGAGGGAGACTCCTGG
CCACCCCCGAAGCTGGAAGTATTGGACCTGGGCAGCAAGTTCCACGCGAA
GCATCGAATTGACGAGTCCAGTCTTCGGCACGGATGTCAGGTGTTTTACC
TCTATGTTCCCGGCAGCGACTACTAA
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