mRNA_Ecto-sp9_F_contig1153.1307.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1153.1307.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L576_9PHAE) HSP 1 Score: 896 bits (2316), Expect = 0.000e+0 Identity = 526/655 (80.31%), Postives = 549/655 (83.82%), Query Frame = 1
Query: 1 MSSAWTTGDRRAKKQLEKSLSSDQNDHVTRFALVRLLASKADPAAAEELLRGPGVEDRLLADPNTRVAMLSSLGGTYLILWRARGETTSGSTGSRAGGGQGKDTREMVEIRLDVSSERTDLLHRAQHFLEEALMAPENLNDPAIRAQV-------------------------------------------AFCKEARGDCKEALALYASIISDSALSPGASAVIFRTSVLLAYVGRFDECVRYLEFVEGQPPKGCSMLLVQAILYTCYVSLGLEMKASRRLITLREAYNDEYTAGRIGGGFSREEIPWDRLAGWFYMWRELGVKSLRAGDYYAGIQMFSQATLQREDPETMVCTAEMLWVLGEPKRALALCEKAYAADPLHIGAQRRLSGWAPKKWKDRIVKEEERREAITEMRRLSDLSDRKADAMLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDEFSRSDSSSSRSGSXXXXXXXXXXXXXXXXXXXXXXXXFASSLSAREQLERSVDEKSSASSAPXXXXXXXXSAAEAAEAGRSNFSACFRAETERAMRRKREANEHHREMPMDMASVKVAAETIHDAMRGGGWKTATNGARSGFATHEMRALARFQWHRKTHEAKITKVVYGS 1836
MS AWT GD RAKKQLEKSLSSDQ+DHVTRFALVRLLASKA+PAAAEELLRGPGVEDRLLADPNTRVAMLSSLGG YL+LWRARGETTS STGSRAGGGQGKDTRE+VEIRLDVSSERTDLLHRAQHFLEEALM+PENLNDPAIRAQV AFCKEARGD KEAL LYASIISDSALSPGASAVIFRTSVLLAYVGR DECVRYLEF+EGQPPKGCSMLLVQA+LYTCYVSLGLE+K SRRLITLREAYNDEYTAGR+G GFSR+EIPWDRL GWFYMWRELGV+S+RAG+YYAGIQMFSQATLQR+DPETMVCTAEMLWVLGEPKRALALCE+AYAADPLHIGAQRRLSGWAP+KWK+RIVKEEERREAITEMRRL+DLSD+KADAMLAR XXXXXXXXXXXXXGSD+FS SDSSSSRSGS XXXXXXXXXXXXXXXXXXXXXXFASSLSA+EQ+ERSVDEKSSASSAP SAAEAAEAGRSNFSACFRAETERAMRRKREA EHH EMPMDMASVKVAAE IH+AMRGGGWKT TNGARSGFATHEMRALARFQ HRKTHEAKITKVVYGS
Sbjct: 1 MSLAWTKGDWRAKKQLEKSLSSDQDDHVTRFALVRLLASKAEPAAAEELLRGPGVEDRLLADPNTRVAMLSSLGGAYLMLWRARGETTSESTGSRAGGGQGKDTREVVEIRLDVSSERTDLLHRAQHFLEEALMSPENLNDPAIRAQVGERGKWKSVLRLPGLARLPPSRLSLFRPDIRSLLHPDCCAFKKAFCKEARGDYKEALTLYASIISDSALSPGASAVIFRTSVLLAYVGRLDECVRYLEFIEGQPPKGCSMLLVQALLYTCYVSLGLEVKVSRRLITLREAYNDEYTAGRMGRGFSRDEIPWDRLPGWFYMWRELGVESIRAGNYYAGIQMFSQATLQRQDPETMVCTAEMLWVLGEPKRALALCERAYAADPLHIGAQRRLSGWAPQKWKERIVKEEERREAITEMRRLADLSDKKADAMLARRRRREKARFLRAWRRLHDKHKHRRSTSTEGEEAQTGXXXXXXXXXXXXXGSDKFSWSDSSSSRSGSSSXXXXXXXXXXXXXXXXXXXXXXFASSLSAKEQVERSVDEKSSASSAPVPEPFPVPSAAEAAEAGRSNFSACFRAETERAMRRKREATEHHGEMPMDMASVKVAAEAIHEAMRGGGWKTGTNGARSGFATHEMRALARFQCHRKTHEAKITKVVYGS 655 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1153.1307.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1153.1307.1 >prot_Ecto-sp9_F_contig1153.1307.1 ID=prot_Ecto-sp9_F_contig1153.1307.1|Name=mRNA_Ecto-sp9_F_contig1153.1307.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=613bp MSSAWTTGDRRAKKQLEKSLSSDQNDHVTRFALVRLLASKADPAAAEELLback to top mRNA from alignment at Ecto-sp9_F_contig1153:12181..16788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1153.1307.1 ID=mRNA_Ecto-sp9_F_contig1153.1307.1|Name=mRNA_Ecto-sp9_F_contig1153.1307.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4608bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1153:12181..16788- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1153:12181..16788- >mRNA_Ecto-sp9_F_contig1153.1307.1 ID=mRNA_Ecto-sp9_F_contig1153.1307.1|Name=mRNA_Ecto-sp9_F_contig1153.1307.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3678bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1153:12181..16788- (Ectocarpus species9 EcSCA_722f female)back to top |