mRNA_Ecto-sp9_F_contig11510.1288.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11510.1288.1
Unique NamemRNA_Ecto-sp9_F_contig11510.1288.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11510.1288.1 vs.
Match: Trithorax (3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY8_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 4.560e-86
Identity = 144/150 (96.00%), Postives = 146/150 (97.33%), Query Frame = 1 
Query:    1 GRVEAAVEVAVAVASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALRRPIGSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPESQLVPSGPNPNLGEEIKGEAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR 450
            GRVEAAVEVAVAVASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALRRP+GSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPE Q VPSG NP+LGEEIKGEAPKAVVPEWKVLQAAH ARERSGEEAGRHLRAFR
Sbjct: 1933 GRVEAAVEVAVAVASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALRRPVGSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPEGQPVPSGTNPSLGEEIKGEAPKAVVPEWKVLQAAHAARERSGEEAGRHLRAFR 2082
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BLAST of mRNA_Ecto-sp9_F_contig11510.1288.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 2.140e-85
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 1 
Query:    1 GRVEAAVEVAVAVASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALRRPIGSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPESQLVPSGPNPNLGEEIKGEAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR 450
            GRVEAAVEVAVAVASSPALLYTRGE+GEEESALRESLSLYRTDCTDKALRRP+GSAKCEPIDLPTLHKRRAYTLPMPT +TRQFAAPDGEFLAQSPE QLVPSGPNP+LGEEIK EAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR
Sbjct: 1773 GRVEAAVEVAVAVASSPALLYTRGEIGEEESALRESLSLYRTDCTDKALRRPVGSAKCEPIDLPTLHKRRAYTLPMPTLMTRQFAAPDGEFLAQSPEDQLVPSGPNPSLGEEIKVEAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR 1922
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BLAST of mRNA_Ecto-sp9_F_contig11510.1288.1 vs.
Match: GF22528 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI07_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 5.750e-60
Identity = 107/139 (76.98%), Postives = 117/139 (84.17%), Query Frame = 1 
Query:   40 ASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALRRPIGSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPESQLVPSGPNPNLGEEIK--GEAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR 450
            ASSPALLYTR  +GEEESALRESLSLYR DCTDKALRR + SAKCE IDL TLHKR+AYTLP+PTPVTRQFAAPDGE L+ +P  Q VP GPNP LG ++K   EA K VVPEWKVLQAAHGAR+R GEEA RH+RAFR
Sbjct: 1211 ASSPALLYTRRVIGEEESALRESLSLYRADCTDKALRRTVESAKCEAIDLTTLHKRKAYTLPLPTPVTRQFAAPDGELLSHTPVRQPVPRGPNPTLGGKVKVKPEAAKVVVPEWKVLQAAHGARQRFGEEAARHMRAFR 1349
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11510.1288.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S9_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 4.040e-48
Identity = 118/276 (42.75%), Postives = 131/276 (47.46%), Query Frame = 1 
Query:    1 GRVEA-AVEVAVAVASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALR-----------------------------------------------------------------------------------------------------------------------------RPIGSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPESQLVPSGPNPNLGEEIKGEAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR 450
            GRV+A AVEVAVAVASSPALLYTR  +GEEESALRESLSLYR DCTDKALR                                                                                                                             R +GSAKCE I L TLHKR+A+TLP+PTPVTRQFAAPDGEFL+ +P  Q VP GPNP+L  ++K EA K VVPEWKVLQAAHGAR+R GEEA RH+RAFR
Sbjct: 1352 GRVKATAVEVAVAVASSPALLYTRRVIGEEESALRESLSLYRADCTDKALRLFVEIMRMVKKPGGWKQKLWKGDKLELPLFGIPRDMTRIEFKNCCDREGLHCLARGQVGREHEHVRVKLTKGDSQECLGVDIEKLSNYVRKFGWRVCIANMIETEKGSRASKSEEVREEAEGERWRTVGSAKCEAIHLTTLHKRKAHTLPLPTPVTRQFAAPDGEFLSHTPVRQSVPRGPNPSLRGKVKSEAAKVVVPEWKVLQAAHGARQRFGEEAARHMRAFR 1627
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11510.1288.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Trithorax4.560e-8696.003 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=... [more]
Uncharacterized2.140e-8595.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
GF225285.750e-6076.98n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized4.040e-4842.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11510contigEcto-sp9_F_contig11510:158..1421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.5
Seed ortholog evalue5.8e-74
Seed eggNOG ortholog2880.D7FHY8
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K02606,ko:K09186,ko:K09188,ko:K14964,ko:K17586,ko:K22197
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04110,ko04111,ko04113,ko04934,ko05202,ko05225,map00310,map04110,map04111,map04113,map04934,map05202,map05225
KEGG ModuleM00284
EggNOG free text desc.mRNA processing
EggNOG OGsCOG2940@1,COG5141@1,KOG0825@1,KOG0825@2759,KOG0955@2759,KOG4443@2759
EC2.1.1.43
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03000,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size452
Cds size450
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11510.1288.1prot_Ecto-sp9_F_contig11510.1288.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11510 159..1421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928407.016755-CDS-Ecto-sp9_F_contig11510:158..3081622928407.016755-CDS-Ecto-sp9_F_contig11510:158..308Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11510 159..308 -
1692277860.6224139-CDS-Ecto-sp9_F_contig11510:158..3081692277860.6224139-CDS-Ecto-sp9_F_contig11510:158..308Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11510 159..308 -
1622928407.031341-CDS-Ecto-sp9_F_contig11510:607..7581622928407.031341-CDS-Ecto-sp9_F_contig11510:607..758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11510 608..758 -
1692277860.6356401-CDS-Ecto-sp9_F_contig11510:607..7581692277860.6356401-CDS-Ecto-sp9_F_contig11510:607..758Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11510 608..758 -
1622928407.044609-CDS-Ecto-sp9_F_contig11510:1272..14211622928407.044609-CDS-Ecto-sp9_F_contig11510:1272..1421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11510 1273..1421 -
1692277860.6455317-CDS-Ecto-sp9_F_contig11510:1272..14211692277860.6455317-CDS-Ecto-sp9_F_contig11510:1272..1421Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11510 1273..1421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11510.1288.1

>prot_Ecto-sp9_F_contig11510.1288.1 ID=prot_Ecto-sp9_F_contig11510.1288.1|Name=mRNA_Ecto-sp9_F_contig11510.1288.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=150bp
GRVEAAVEVAVAVASSPALLYTRGEMGEEESALRESLSLYRTDCTDKALR
RPIGSAKCEPIDLPTLHKRRAYTLPMPTPVTRQFAAPDGEFLAQSPESQL
VPSGPNPNLGEEIKGEAPKAVVPEWKVLQAAHGARERSGEEAGRHLRAFR
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mRNA from alignment at Ecto-sp9_F_contig11510:158..1421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11510.1288.1 ID=mRNA_Ecto-sp9_F_contig11510.1288.1|Name=mRNA_Ecto-sp9_F_contig11510.1288.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1264bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11510:158..1421- (Ectocarpus species9 EcSCA_722f female)
GGGAGGGTCGAGGCGGCGGTTGAGGTGGCAGTGGCGGTGGCTTCGAGCCC
GGCGCTGCTGTACACCCGCGGAGAGATGGGCGAGGAGGAGAGCGCACTGA
GGGAGTCGCTGTCGCTGTACAGGACCGACTGCACCGACAAGGCTTTGAGG
TGGGTGTAGCCAAGACCACACACACAGCGGATGTTTTTTTGAGGCAGGAG
AGCGAAAGTTGCAGCTGCTTCTGATCCACAGGTTCCATGTTGGGAACCCT
CATAGCCGCGTTGTGTACCGTTCCATTGGGGAGTGTTGTCAAGAAGAGTC
GGAGGAGGCGTGTTCCGACGACCTCTCACTGGAGCGATTATATGACGCGA
GTGCTGACGAGCTGGAGCGATTGTTGGTGCGAGTGTTCCGTGTGGGGCGC
ATTGGTATATAGATTCTTGAAGAATTCTTACCCTCTCCCTCTCCCCTGCC
CAACCATCGTAAACCTGACGCCCTTTAGAGGCCGTAAAACCAAGTGCTGT
CTCAATTACGAATGCATACTTGTACACCATCAGCGGAAGCAGAAAGGCCG
TCACGACGTACAGGTGATCATGTCTCATGCTTTCATTCCTTCGCCGCGGC
GCCGCCTTGATCGCGGCCCCCCGCTCGCCGCCTTCCTGCCTGTTCGCACT
CGTATCGAACCAGGCGACCGATCGGGAGCGCCAAGTGTGAACCCATCGAC
CTCCCCACGTTGCACAAGCGCAGGGCGTACACGCTTCCCATGCCAACTCC
GGTGACCCGGCAGTTCGCCGCCCCGGACGGAGAGTTCCTTGCCCAGTCAC
CCGAAAGCCAGCTGGTAAATAAGCCTTACGCTGCTCGCACGGACTGTCGC
ATGCGTCCAAAGGGGGAGTCGATTGCCTGTCATTGTAGGACTACTTTGGA
GGGGTTGGCAACGTATATCACGGCACGGAAGGTGACATTTCACGAGATGA
GTCGTCGAAGGCCTTGCTGCGAACCAGAAAGCCAAGGCTTTTGTAGCTCT
CGAGCATCAAGTTACCATGGTGTGCACACCGGCACGGGTCGAATCATGTC
CCCACATCCTGCTGCCGTCCACGCCTAGTCTTTACTCCTGAACTCCTATA
TGCCCTCGGCCAGGTACCCAGCGGCCCCAATCCCAACCTTGGGGAGGAGA
TCAAGGGCGAGGCTCCGAAGGCGGTGGTTCCCGAGTGGAAGGTGCTGCAG
GCGGCCCACGGGGCGAGGGAGCGGAGCGGGGAGGAGGCGGGGCGGCACTT
GCGCGCGTTCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11510:158..1421-

>mRNA_Ecto-sp9_F_contig11510.1288.1 ID=mRNA_Ecto-sp9_F_contig11510.1288.1|Name=mRNA_Ecto-sp9_F_contig11510.1288.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11510:158..1421- (Ectocarpus species9 EcSCA_722f female)
GGGAGGGTCGAGGCGGCGGTTGAGGTGGCAGTGGCGGTGGCTTCGAGCCC
GGCGCTGCTGTACACCCGCGGAGAGATGGGCGAGGAGGAGAGCGCACTGA
GGGAGTCGCTGTCGCTGTACAGGACCGACTGCACCGACAAGGCTTTGAGG
GGAGGGTCGAGGCGGCGGTTGAGGTGGCAGTGGCGGTGGCTTCGAGCCCG
GCGCTGCTGTACACCCGCGGAGAGATGGGCGAGGAGGAGAGCGCACTGAG
GGAGTCGCTGTCGCTGTACAGGACCGACTGCACCGACAAGGCTTTGAGGC
GACCGATCGGGAGCGCCAAGTGTGAACCCATCGACCTCCCCACGTTGCAC
AAGCGCAGGGCGTACACGCTTCCCATGCCAACTCCGGTGACCCGGCAGTT
CGCCGCCCCGGACGGAGAGTTCCTTGCCCAGTCACCCGAAAGCCAGCTGG
CGACCGATCGGGAGCGCCAAGTGTGAACCCATCGACCTCCCCACGTTGCA
CAAGCGCAGGGCGTACACGCTTCCCATGCCAACTCCGGTGACCCGGCAGT
TCGCCGCCCCGGACGGAGAGTTCCTTGCCCAGTCACCCGAAAGCCAGCTG
GTACCCAGCGGCCCCAATCCCAACCTTGGGGAGGAGATCAAGGGCGAGGC
TCCGAAGGCGGTGGTTCCCGAGTGGAAGGTGCTGCAGGCGGCCCACGGGG
CGAGGGAGCGGAGCGGGGAGGAGGCGGGGCGGCACTTGCGCGCGTTCCGG
GTACCCAGCGGCCCCAATCCCAACCTTGGGGAGGAGATCAAGGGCGAGGC
TCCGAAGGCGGTGGTTCCCGAGTGGAAGGTGCTGCAGGCGGCCCACGGGG
CGAGGGAGCGGAGCGGGGAGGAGGCGGGGCGGCACTTGCGCGCGTTCCGG
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