mRNA_Ecto-sp9_F_contig1151.1285.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1151.1285.1
Unique NamemRNA_Ecto-sp9_F_contig1151.1285.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 2.460e-134
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEEKTKK 612
            MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGD+SLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATS+HSERRVARNE KLAGIRIRQKEEKTKK
Sbjct:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEKTKK 204
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T6_9STRA)

HSP 1 Score: 248 bits (634), Expect = 4.070e-80
Identity = 134/201 (66.67%), Postives = 151/201 (75.12%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEEK 603
            MVKHNNV+PNGHFHKKWQ RV+TWFDQP KKKARR  R  KAA +APRPTQLLRPAVHCPTIKYN KVRLGRGF + ELKEAGIS+K A TIGI+VDHRRTN+S  +   NVARLKEY++ LIIFPR S   PK GDA+  +  AA QVTG  MPL KA   V F  VT EM A   +   RVAR++ +L GIR +Q  EK
Sbjct:    1 MVKHNNVIPNGHFHKKWQTRVKTWFDQPMKKKARRMRRAAKAAAVAPRPTQLLRPAVHCPTIKYNMKVRLGRGFTLAELKEAGISRKVARTIGISVDHRRTNRSLATMQNNVARLKEYQSKLIIFPRRSNAKPKAGDAAPGDTAAAAQVTGAVMPLTKAVPAVAFAAVTDEMKAFKAYEALRVARSDARLVGIRKKQAAEK 201
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN)

HSP 1 Score: 233 bits (594), Expect = 4.460e-74
Identity = 124/193 (64.25%), Postives = 149/193 (77.20%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAG 576
            MVKHNNV+PNGHFHK WQRR++TWFDQ AKKKARR  R+EKAA +APRP   LLRPAVHCPT+KY SKVR G+GF++EELKEAGISKK AL+IGIAVD+RRTNKS ES  ANV RLK Y+A L+IFPR S + PK GD++ EE   A QVTG   P+ +     E   +T EM  TSV+++ RVAR + ++AG
Sbjct:    1 MVKHNNVIPNGHFHKDWQRRIKTWFDQAAKKKARRLRRKEKAAAIAPRPAAGLLRPAVHCPTVKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQVTGPIFPIARKTVKSESAVITEEMKNTSVYAQLRVARADARIAG 193
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: Large (subunit ribosomal protein L13e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7Z7_NANGC)

HSP 1 Score: 231 bits (588), Expect = 3.620e-73
Identity = 121/194 (62.37%), Postives = 144/194 (74.23%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIR 582
            MV+HNNV+PN HFHK WQ RV+TWF QPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGF ++ELKEAG++KK A ++GIAVDHRRTN S ES  ANV RLKEY++ LI+FP G    PK GD+S  E +AA Q TG  +PL    K VEF+ V+ E+     H+  RVARN+ KL GIR
Sbjct:    1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.310e-72
Identity = 119/202 (58.91%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEEK 603
            MVKHNNV+PNGHFHK WQ R++TWFDQ +KKK+RR  R+ KAA +APRP   LLRPAVHCPT+KY SKVR GRGF ++ELKEAGIS+K ALTIGIAVD+RRTNKS ES  ANV RLK Y++ L++FPR     PK GD++LEE K A Q TG  +P+ +  K +    +T +M  TSV +  R+AR + +L G+R ++  EK
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQHTGAILPIARVSKDIATAKITDDMKKTSVVNTLRLARADARLVGLRKKKAAEK 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.570e-70
Identity = 120/195 (61.54%), Postives = 147/195 (75.38%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIR 582
            MVKHNNVVPN H HKKWQRRV+TWFDQPAKKK RR AR+ KAAK+APRP   LLRP VHC T KY+SK RLGRGF++ ELKEAGI KK A TIGIAVDHRRTNKS E+  AN+ARL E++A L++FPR S   PK GD++ EE   ATQ+TG  +P+VK D+ +E   VT EM      +  R+A+++ ++ G+R
Sbjct:    1 MVKHNNVVPNVHCHKKWQRRVKTWFDQPAKKKNRRLARKAKAAKLAPRPVSGLLRPVVHCSTQKYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQLTGPILPIVKTDE-LETAAVTDEMKNFKAFTSLRLAKSDARVLGLR 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZTH1_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.840e-70
Identity = 120/202 (59.41%), Postives = 145/202 (71.78%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEEK 603
            MVKHNNV+PNGHFHK WQ R++TWFDQ AKKK+RR  R+ KAA +APRP   LLRPAVHCPT+KY SKVR GRGF ++ELKEAGIS+K ALTIGIAVD+RRTNKS ES  ANV RLK Y++ L++FPR     PK GDAS EE K+  Q  G   P+ +A   V    +T EM   SV    R+AR + +L G+R ++  EK
Sbjct:    1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRISKPKNGDASAEELKSVVQHKGALFPIARASTEVATAKITEEMKNDSVVKTLRLARADARLVGLRKKKAAEK 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAC9_9STRA)

HSP 1 Score: 223 bits (568), Expect = 4.030e-70
Identity = 118/201 (58.71%), Postives = 147/201 (73.13%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEE 600
            MVKHNNVVPN HFHK+WQ RV+TWFDQPAKKKARR AR+ KAA +APRP   LLRPAV CPT +YN+KVR GRGF +EELK AGISK+ A TIGIAVDHRR+NKS  +   NV RL  Y+A L++FPRGS   PK GDAS+EE  AATQ+TG   P+       EF+ +T ++ A + +   R+ R   ++ G+RI++ +E
Sbjct:    1 MVKHNNVVPNQHFHKQWQNRVKTWFDQPAKKKARRAARKAKAAAIAPRPAAGLLRPAVRCPTQRYNTKVRAGRGFTLEELKTAGISKRVARTIGIAVDHRRSNKSTATLQENVQRLNAYKAKLVVFPRGSNAKPKTGDASVEETSAATQLTGPLFPITAKPVSTEFVALTDDLKAKNAYRTLRIERCNRRMNGLRIKRAKE 201
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA)

HSP 1 Score: 222 bits (566), Expect = 7.830e-70
Identity = 115/201 (57.21%), Postives = 148/201 (73.63%), Query Frame = 1 
Query:    4 VKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEEK 603
            +KHNNV+PNGHFHK WQ R++TWFDQ +KKK+RR  R+ KAA +APRP   LLRPAVHCPTIKY SKVR GRGF ++ELKEAGIS+K ALTIG++VD+RRTNKS ES  ANV RLK Y++ L++FPR     PK GD+ +EE K ATQ+ G  +P+ +  K V    +T E+   SV    R+AR + +L G+R ++ +EK
Sbjct:    1 MKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQLIGAVLPIARPSKEVPTAKITEELKNNSVVKTLRLARADARLVGLRKKKADEK 201
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Match: 60S (ribosomal protein L13 n=5 Tax=Peronosporaceae TaxID=4777 RepID=H3G8S1_PHYRM)

HSP 1 Score: 219 bits (559), Expect = 9.000e-69
Identity = 118/205 (57.56%), Postives = 150/205 (73.17%), Query Frame = 1 
Query:    1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQ-LLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEEKTKK 612
            MVKHNNV+PNGHFHK W+ R++TWFDQ AKKK RR AR+ KAA +APRP   LLRPAVHCPTIKY SKVR G+GF +EELKEAGI++K A++IGIAVD RRTNKS ES  ANV RLK Y+A L++FPR S + PK GD+S EE K A Q TG  +P+ ++        +T EM   SV ++ RVAR + ++ G + ++  +K +K
Sbjct:    1 MVKHNNVIPNGHFHKYWESRIKTWFDQAAKKKTRRLARKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGKGFTLEELKEAGINRKQAISIGIAVDFRRTNKSVESLQANVHRLKAYKAKLVVFPRKSVNKPKNGDSSPEETKNAVQYTGAILPITRSSVKSTTAVITPEMKEKSVFTQLRVARADKRIFGKQAKRLADKKEK 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1151.1285.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.460e-13498.53protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6... [more]
60S4.070e-8066.67ribosomal protein L13 n=2 Tax=Tribonema minus TaxI... [more]
60S4.460e-7464.25ribosomal protein L13 n=1 Tax=Pythium insidiosum T... [more]
Large3.620e-7362.37subunit ribosomal protein L13e n=3 Tax=Monodopsida... [more]
60S4.310e-7258.91ribosomal protein L13 n=1 Tax=Thraustotheca clavat... [more]
60S2.570e-7061.54ribosomal protein L13 n=1 Tax=Fibrocapsa japonica ... [more]
60S2.840e-7059.41ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxI... [more]
60S4.030e-7058.71ribosomal protein L13 n=1 Tax=Pseudictyota dubia T... [more]
60S7.830e-7057.21ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=10... [more]
60S9.000e-6957.56ribosomal protein L13 n=5 Tax=Peronosporaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1151contigEcto-sp9_F_contig1151:7904..13265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score391.0
Seed ortholog evalue3.5e-106
Seed eggNOG ortholog2880.D7G7K6
Preferred nameRPL13
KEGG koko:K02873,ko:K10755
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00177,M00179,M00289,M00295
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009506,GO:0009719,GO:0009725,GO:0009735,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016236,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0061919,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4352@1,KOG3295@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
Exons6
Model size757
Cds size615
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928406.638672-UTR-Ecto-sp9_F_contig1151:7903..80451622928406.638672-UTR-Ecto-sp9_F_contig1151:7903..8045Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1151 7904..8045 -
1692277860.3901217-UTR-Ecto-sp9_F_contig1151:7903..80451692277860.3901217-UTR-Ecto-sp9_F_contig1151:7903..8045Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1151 7904..8045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928406.6501198-CDS-Ecto-sp9_F_contig1151:8045..81501622928406.6501198-CDS-Ecto-sp9_F_contig1151:8045..8150Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 8046..8150 -
1692277860.4065843-CDS-Ecto-sp9_F_contig1151:8045..81501692277860.4065843-CDS-Ecto-sp9_F_contig1151:8045..8150Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 8046..8150 -
1622928406.6608977-CDS-Ecto-sp9_F_contig1151:8744..88101622928406.6608977-CDS-Ecto-sp9_F_contig1151:8744..8810Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 8745..8810 -
1692277860.4218347-CDS-Ecto-sp9_F_contig1151:8744..88101692277860.4218347-CDS-Ecto-sp9_F_contig1151:8744..8810Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 8745..8810 -
1622928406.6779308-CDS-Ecto-sp9_F_contig1151:9307..94391622928406.6779308-CDS-Ecto-sp9_F_contig1151:9307..9439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 9308..9439 -
1692277860.4335518-CDS-Ecto-sp9_F_contig1151:9307..94391692277860.4335518-CDS-Ecto-sp9_F_contig1151:9307..9439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 9308..9439 -
1622928406.6934872-CDS-Ecto-sp9_F_contig1151:9820..99431622928406.6934872-CDS-Ecto-sp9_F_contig1151:9820..9943Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 9821..9943 -
1692277860.4499533-CDS-Ecto-sp9_F_contig1151:9820..99431692277860.4499533-CDS-Ecto-sp9_F_contig1151:9820..9943Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 9821..9943 -
1622928406.7095616-CDS-Ecto-sp9_F_contig1151:11243..113511622928406.7095616-CDS-Ecto-sp9_F_contig1151:11243..11351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 11244..11351 -
1692277860.4602048-CDS-Ecto-sp9_F_contig1151:11243..113511692277860.4602048-CDS-Ecto-sp9_F_contig1151:11243..11351Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 11244..11351 -
1622928406.7228642-CDS-Ecto-sp9_F_contig1151:13184..132651622928406.7228642-CDS-Ecto-sp9_F_contig1151:13184..13265Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 13185..13265 -
1692277860.472157-CDS-Ecto-sp9_F_contig1151:13184..132651692277860.472157-CDS-Ecto-sp9_F_contig1151:13184..13265Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1151 13185..13265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1151.1285.1prot_Ecto-sp9_F_contig1151.1285.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1151 8046..13265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1151.1285.1

>prot_Ecto-sp9_F_contig1151.1285.1 ID=prot_Ecto-sp9_F_contig1151.1285.1|Name=mRNA_Ecto-sp9_F_contig1151.1285.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=205bp
MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPT
QLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRR
TNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDASLEEQKAATQVT
GVTMPLVKADKPVEFLPVTAEMTATSVHSERRVARNELKLAGIRIRQKEE
KTKK*
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mRNA from alignment at Ecto-sp9_F_contig1151:7904..13265-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1151.1285.1 ID=mRNA_Ecto-sp9_F_contig1151.1285.1|Name=mRNA_Ecto-sp9_F_contig1151.1285.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5362bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1151:7904..13265- (Ectocarpus species9 EcSCA_722f female)
ATGGTGAAGCACAACAACGTCGTGCCGAACGGCCACTTCCACAAGAAGTG
GCAGAGGAGGGTCCGGACATGGTTCGACCAGGTGAGAAGGCTGCAGCAGC
AGCGAGCCCCAAGCATCAAAGGCAGGAGAGCTGTAAACCCCCTAAACTTG
CACGACCAAAGGAATGGCTCCCCCATTGGGGGCGGCTGCGTGGCAGTCCC
CTATAGCCAAGGGATTGAAAGAGGATGATCTCTGGGTATGACGTTCAGCA
GTGTGTCTTCACTGTGCTTGCTTGTTCGGGGAGGTTTGTGTCAAGACCGT
ACAAAAGAGTGCATATCTACCAAACTCGCGTGTGTGTGGCAAGCCGTCGT
TTGGACAGCAGCGGCAGGGCACGCCTGTGGCCGTCATCTTGCCGCTTGCC
TTGGAGCACCGCGGCTTTTATGGAGGCACACGTGACAGCACTACTGTTGC
CAGTGCCCGCAGTTCTTCTGGCCGTTCCGTCTGCTTCAGGAACCCCCGAA
CTTGACACGCTATGATGTTAACGAATCTGTTGCTGTGTGCTCCCGTGTTC
GACGACCGGAGTGGGCAGGGACATGGCAGTCCGATTCCCCTAAGGCAGTA
CTTGCAGAGTACAATAGTACAGCACACAACGACTGCTGGGATGCACTTGC
ACTGTTGTATTTGTCCCTGGCTGTCGAGCTTCGTGTCACCTGGAAGGCGT
AACAACGGTACTTGACATACGTCGAACCGTTCAAAGTAGCGCCTGGTGTC
TGGTATACTCAAGTCTAGTGTAAAATTGCTGTGGTGTTGATTTCGGGTCT
TGGAAGGGGCGCTGCTGTAGGTTACATGATGTAAGAATCACACCCCCTTG
GGACCGATTTTCAATGCTGGATTACTCCACGACGAAGAGGGTGCCGAAAT
TGACGGATATGATTTCGGAAAAGCTCTCGACGAGACGGTTCCAACGCCGC
CATTTTCGGCACCGTCACTGCTTTTCCTGCCGAGAAATCGAGCTTCGAAA
ATTGGTCCAGGGGGTGTGATCCGTTGTGCGACTTGAGGTGTGCGACACGA
ACGGAAGGGCGGCTTGCCGTTCCTTTTCGGTTGGGCTAGTGAGGTGCAAT
CACTCGATGTAGTTTCCTATGCAACAGCGTCAACGTCTGCCTTCAAAATG
CAACGATAGCCTATATCTTATTGGAAGTATGTTCCCAACGAGTAGTGAAC
GGCCCTACTTCTGTGAACACCCAAGCAAGCACCACGGCGAAGTTTTTTCA
CCACGAGCAAAGCAATCCCCTTTTGCTTCTGTGCCGAGCGCCATTGCTGA
CGGTTTTCCGGGCAGGGGCACTATCTCAAGCGCGACGAAATTAGCTGGCT
TCTGTTTCGCTGAACGTAGAGAACATTCGACTTGAGATATTGAGATATGT
TTCGTGCTTTTGATCAGACCAAGCCTACGTCGCGCGTCTGAGTACGAAAA
TGGACTTTTGAGCAACTTGGCCACCTTCTTTTCACGCACCTGCTGTGCGT
GGCTGAATCTTCACTGTCGTAGATCCGGAACTCTGTTGGGCCGAGGTTTC
CTTGTGCATACGCATACGGAAATACATGCTTGTTTTAACAAGCTTGACAA
CAGTAGGTGCGCATGGGCGAGCTCACAACGTGAGAGATGCCAGAGCTCAA
ACGCTGGTACTGCGGTTGCCAATGGCAGAGGTCTGGCTATGAGCCCGAGC
TGCATCGTGCCACAGGCTTGTTTTGCAGCTCGTGGCCTCTGCCGATGGAT
GAGCAACATCGTGGAAGGATAAAAGCACACTCACGAACGAACTGCCTGGT
TTTTTTGTCTGTTTGCTCAACCTCGCCCTTTCCTTTCTTCGCCGCCAAAT
CGTGTTTGTGTGCGCGATCGCCGGGTTGTTCCGTGTTTGCTAACTCGCTT
CGACGGTTACACAGCCCGCCAAGAAGAAGGCGCGCCGCCAGGCTCGGCAG
GAGAAGGCCGCTAAGATGGCGCCGCGCCCCACCCAGCTCCTCCGGCCGGC
AGTGCACTGCCCCACGATCAAGGTGAGGGGTAGTGCGAACTTCTTTCTAC
GGAGTATGCATGTATTCCTCTCATATCTTCGGTCCAGTCTGCGCGGGCCT
TTGGGGGCACTCGCGGTCCCAACCAATTTGGTCTCTCGAAAAGTCAGACT
GCTGTTTCAGCGTGCCGCACTGCTGATGCACCTCAGGAGACACTGTACCA
GTTGAACTGATGTTAACAAGGTATCATCCAAAACGTGGCTGAAGAAGAGC
CTCCGGTACATTGCACACACTGCGTGAAGGAAAGGTAAATGATCCTATAA
TAGTGTCGGGTACGCGTGTGTCCTTGGGTGTGTTGGGAACGCTCTCAACA
ACTCTATATATGACCCGTGGCAAGAAGTTGGAGCTGGCGGGTGGTGCTCT
ACACCACCTGGCTTGCGTGAGTCTGCGCAACCAGCGTTGACATAAAAGAA
AGGTTTGCGTGCTCATGACCAAGAGTACCTGAGCCGCTTTGCTCTTGAAG
GTGCGGCGAATCAGAAATTAGTGTCCACCCGCTGTGTTTCGTGTGCCGCC
GTGCCGTGGACGTCAGATTTGCTCCGCAGCACCCCCGAAAGAGGCACGGG
GGCGCCGTGAGTGAGAAATTCAACTACACTGCCCCCTGTGTCGATACTGC
GCCGGGGTTTAGCCTCGGGCATCCCGTGTAGCGGTCATGTGCGCCGGTGG
TTGCTTGCCCTGGCTGTAGGCAACTCACCCCGCCCGCCGCCAAGATGTGT
CCCGTCGGCATGGTGGCATTGGCAAGCTACCTTCCCACCTCCCGCGAGGC
GGGTTTTACAAGTGATGTGTCGCGTTGGTCTTCGGCGCTCCCTGCCAAGT
CAATCGAACACTCCCGTGGTGTCGGCTTCGACAACAGCCCTTGCAGAGAA
TTCGACCAGGAGGTTCATGGGAGGAGGATTTGCGTGTTGTCGGGTTATCG
CTTTGATCACCTCACGTCTCTTTTTCCGAAGTTCCTCCCCCTCCCAGACC
GCTGCCATCTGTGTACTGTACCCCCGTTCGTCATGGTCGTATTCTCTACT
TGGTCCCGATTTTGCTCTCTTGGCATCGACGATTGATGTAACAGTTTTCG
CCCGTGATTAAGAAGCAAAGGCTCAAATTTTAGCGATAGATGAGAAAATC
GACTGAGAAACACACTAGCTGTGGACCCTACACTCAACCCTATGTACATG
ATGTACTGAACATGATAGGCTCCACGGTGGTGACGAAAGAAGAAATTGAG
CCTTGACCCCGAATTGTCGTTTCTTACCGACGGGCGCTAACCGCTGCGTA
CCTCTTCTGTTTTTGTTTGCAGTACAACTCCAAGGTCCGCCTTGGGCGCG
GCTTCAACGTGGAGGAGCTCAAGGAGGCGGGCATCTCCAAGAAGACGGCC
CTCACCATCGGTATCGCCGTCGACCACCGCCGCACCAACAAGTCGGTGAG
CGGAGGGAGAGATGTAGTGGCGTTGTTGTATTGCGTTGTGAGTAGAGAGA
GAGGTTTCACACCTTGTTTTCACGTGCACCAACAAGTCGGTGAGTGGAGA
GATGTTGTTTCACGTGTAAAGCGTGCAAACGGGAAACACAACCCGGAAGT
AACTGGGTTGCACGTCATTTGAAACACCGGGGCTAGGCATAACGCCCGCT
GCTTTGTAATAAAGCTGTTATCAAAAAAGGATTGCTGGCTCTTGCCAACC
TTGTTTCGTCTCCCAACGCTCTTGCCAGACTTCGTCGCGTGGTGTTCATG
CATGAAAGGAGTCGTGCGCGAGAAATGGTGATCGTTTTTTTGTGTGCAAT
TTTGTGCTTGGTTTTGTCTCTTGCAGGAGGAGTCGTTCGCGGCTAACGTG
GCTCGCCTGAAGGAGTACCGCGCCAACCTCATCATCTTCCCCCGCGGCAG
CAAGCACCTGCCCAAGAAGGGAGACGCGTCGCTCGAGGAGCAGAAGGCCG
CCACGCAGGTGGGAATGACAGAATGAGAAGGCTTGTGTGTGTGTGTACCG
CCCCCACAGTTCGCTGGCGTAAGCTGCTGCTCCTCAGCAAGTATCGACAA
GAGAATTGAGAATGATGAAGAACACCAAAGGGTCACCATAGCAAGTGGCG
TTTGTTTGTATGGTAGCATGGAGGGAAGGTGCACGAGGAAGGCAAGGTTT
GTGTCGGGGTTGGTTTGGGTCCCATCCCCGAGGTAACAACGCCGAGCAAG
CAATACAGACCCTAGGCTCAACGGTTCCAGGCCCATGGCAGTTTCCTGGC
CCGGCAGGCATGCTTATCTGTATCCTGGTAACAGCCCGACTCGTGCACGT
GTGCCAAGGCGGCGCCCCAGGTTTCTTGGAATGCTTTCTTTTTTTCCCGA
AAGCCGTCGTGGCCATCTGTGCTTCTCTCAGTGCGTGAACGTCTTTTGTG
TTGTTCACCCCTTTCATGTGCCCTTGCTCCGTGAAAACCTGCTATCTGTT
GCCAGGTTACCGGGGTTACCATGCCCCTCGTCAAGGCCGACAAGCCCGTC
GAGTTCCTCCCCGTAACCGCGGTAAGTTTTCCCTGCCCGTTTTGTTTCCC
CGGGTTTGTTGCTTCTCTCATCTCACGGATACGGTGCCACTAGGTTAGAC
TGTTTTGAAGAAAGATTGTACGTTCATACTAGCAGCTGTTGAAGCGTGAA
ATAGGAGCAAGGAACTTCGAGGTTTACGGTTCGGAAACGCGAGGACGCTC
ACGTCACGCATCTCGAATTGCAGTTAAGTTGATCCTTGCATCGTGTGGCC
TGTTTTCACGACAGAGTGCCGCATGCGTACGTTTTGTGCATTTTGTATCG
TGAACGCCGTCAGTCCAAAACTGCCCAATATGTCGACCCCAGTATATAGA
AGTAACAGGGATTTGTATGAACACTATTATACATCTGGTTCGTGCCGGTA
ATAGGCTTTTTGCCCCCTTGGTTGCCGTACACTCTGCCCGTGCCCCTCGG
AACACATGTACGGTACGCTGCGCTCCCCGTCCACCGCGCTCCTATGTTCG
ACGTAGATTGCGGGTGCGTGTTTTCGTTTTACACCCCGACCCCCGATGAA
TCGTCTGCTCAACGATGTGCTGCCCTCTCTCGACCCCATGCTCCACAAAA
AAAAACGTCCAACAGGAGATGACCGCAACCAGCGTCCACAGCGAGAGGCG
CGTGGCCCGCAACGAGCTCAAGTTGGCCGGAATCCGCATCCGCCAAAAGG
AGGAGAAGACCAAGAAGTAGACGGAGCAAACTTGTCATGATCTTTTCGAG
GAAAAATGCCGTGGGAATTCCGTCTCTGAACGAGCTGGGAGGGGTTTCGA
ACTGGTCTTTTTCTTTCGGGAAATCGGGGGCGGGCGGCTGGCGCTGTTGG
TTTTTCACGGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1151:7904..13265-

>mRNA_Ecto-sp9_F_contig1151.1285.1 ID=mRNA_Ecto-sp9_F_contig1151.1285.1|Name=mRNA_Ecto-sp9_F_contig1151.1285.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1151:7904..13265- (Ectocarpus species9 EcSCA_722f female)
ATGGTGAAGCACAACAACGTCGTGCCGAACGGCCACTTCCACAAGAAGTG
GCAGAGGAGGGTCCGGACATGGTTCGACCAGATGGTGAAGCACAACAACG
TCGTGCCGAACGGCCACTTCCACAAGAAGTGGCAGAGGAGGGTCCGGACA
TGGTTCGACCAGCCCGCCAAGAAGAAGGCGCGCCGCCAGGCTCGGCAGGA
GAAGGCCGCTAAGATGGCGCCGCGCCCCACCCAGCTCCTCCGGCCGGCAG
TGCACTGCCCCACGATCAAGCCCGCCAAGAAGAAGGCGCGCCGCCAGGCT
CGGCAGGAGAAGGCCGCTAAGATGGCGCCGCGCCCCACCCAGCTCCTCCG
GCCGGCAGTGCACTGCCCCACGATCAAGTACAACTCCAAGGTCCGCCTTG
GGCGCGGCTTCAACGTGGAGGAGCTCAAGGAGGCGGGCATCTCCAAGAAG
ACGGCCCTCACCATCGGTATCGCCGTCGACCACCGCCGCACCAACAAGTC
GTACAACTCCAAGGTCCGCCTTGGGCGCGGCTTCAACGTGGAGGAGCTCA
AGGAGGCGGGCATCTCCAAGAAGACGGCCCTCACCATCGGTATCGCCGTC
GACCACCGCCGCACCAACAAGTCGGAGGAGTCGTTCGCGGCTAACGTGGC
TCGCCTGAAGGAGTACCGCGCCAACCTCATCATCTTCCCCCGCGGCAGCA
AGCACCTGCCCAAGAAGGGAGACGCGTCGCTCGAGGAGCAGAAGGCCGCC
ACGCAGGAGGAGTCGTTCGCGGCTAACGTGGCTCGCCTGAAGGAGTACCG
CGCCAACCTCATCATCTTCCCCCGCGGCAGCAAGCACCTGCCCAAGAAGG
GAGACGCGTCGCTCGAGGAGCAGAAGGCCGCCACGCAGGTTACCGGGGTT
ACCATGCCCCTCGTCAAGGCCGACAAGCCCGTCGAGTTCCTCCCCGTAAC
CGCGGTTACCGGGGTTACCATGCCCCTCGTCAAGGCCGACAAGCCCGTCG
AGTTCCTCCCCGTAACCGCGGAGATGACCGCAACCAGCGTCCACAGCGAG
AGGCGCGTGGCCCGCAACGAGCTCAAGTTGGCCGGAATCCGCATCCGCCA
AAAGGAGGAGAAGACCAAGAAGTAGGAGATGACCGCAACCAGCGTCCACA
GCGAGAGGCGCGTGGCCCGCAACGAGCTCAAGTTGGCCGGAATCCGCATC
CGCCAAAAGGAGGAGAAGACCAAGAAGTAG
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