mRNA_Ecto-sp9_F_contig115.1274.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig115.1274.1
Unique NamemRNA_Ecto-sp9_F_contig115.1274.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig115.1274.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 3.390e-131
Identity = 257/306 (83.99%), Postives = 258/306 (84.31%), Query Frame = 2 
Query:    2 RDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDXXXXXXXXXXXXXXRTXXXXXRAVDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGGRETNTNHGGSCLGGSLDEPPMPSTPPPPLPASIATXXXXPARTSLVGLNPKRPLPARPTRGSGSGS----ISAEQRPAAAKGNIWLAKAGLTRKNVAGSSXXXXXXXXXXXRESGSWRREGGTPTHLAGGRAGGGMAAARAKGASGAWAKLHRRLEEESKNFNGKRRAEVVPPVVTSG 907
            RDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQD           XXX  XXXXX    SDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGGRETNTNHGGSCLGGSLDEPPMPSTPPPPLPASIATXXX PAR SLVG NPKRPLPARPTRGS        ISA QRPAAAKGNIWLAKAGLTRK+VAGSSXXXXXXXXXXX            PTHLA       MAAARAKGASGAWAKLHRRLEEESKNFNGKRRAEVVPPVVTSG
Sbjct:  933 RDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSGRSSSPPWSXXXXXXXXXXXXXXSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGGRETNTNHGGSCLGGSLDEPPMPSTPPPPLPASIATXXXLPARNSLVGANPKRPLPARPTRGSXXXXXXXXISAGQRPAAAKGNIWLAKAGLTRKHVAGSSXXXXXXXXXXXXXXXXXXXXXXXPTHLAXXXXXXXMAAARAKGASGAWAKLHRRLEEESKNFNGKRRAEVVPPVVTSG 1238
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BLAST of mRNA_Ecto-sp9_F_contig115.1274.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX8_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 9.800e-75
Identity = 180/302 (59.60%), Postives = 180/302 (59.60%), Query Frame = 2 
Query:    2 RDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDXXXXXXXXXXXXXXRTXXXXXRAVDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGGRETNTNHGGSCLGGSLDEPPMPSTPPPPLPASIATXXXXPARTSLVGLNPKRPLPARPTRGSGSGSISAEQRPAAAKGNIWLAKAGLTRKNVAGSSXXXXXXXXXXXRESGSWRREGGTPTHLAGGRAGGGMAAARAKGASGAWAKLHRRLEEESKNFNGKRRAEVVPPVVTSG 907
            RDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQD  XXXXXXXXXXXX  XXXXXRA DSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEG RE                                                                                                                  GGTPTHLAGGRA GGMAAARAKGASGAWAKLHRRLEEESKNFNG RRAEVVPPVVTSG
Sbjct:  555 RDKLNVFEGASGSKVGKEKPGNRSSVGALHGRGLVTAWAKKTTDHHPASTAINEQDSSXXXXXXXXXXXXXXXXXXXRAGDSDEQEEFTWKAGPSPCRLKGRPSLGLIRNGQVRIMSKALLMSCPEGRREG-----------------------------------------------------------------------------------------------------------------GGTPTHLAGGRADGGMAAARAKGASGAWAKLHRRLEEESKNFNGTRRAEVVPPVVTSG 743
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig115.1274.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.390e-13183.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.800e-7559.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig115contigEcto-sp9_F_contig115:53212..56704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2226
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig115.1274.1prot_Ecto-sp9_F_contig115.1274.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig115 54528..55744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928404.337082-UTR-Ecto-sp9_F_contig115:53211..545271622928404.337082-UTR-Ecto-sp9_F_contig115:53211..54527Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 53212..54527 -
1692277859.842344-UTR-Ecto-sp9_F_contig115:53211..545271692277859.842344-UTR-Ecto-sp9_F_contig115:53211..54527Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 53212..54527 -
1622928404.387859-UTR-Ecto-sp9_F_contig115:55744..559691622928404.387859-UTR-Ecto-sp9_F_contig115:55744..55969Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 55745..55969 -
1692277859.8827324-UTR-Ecto-sp9_F_contig115:55744..559691692277859.8827324-UTR-Ecto-sp9_F_contig115:55744..55969Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 55745..55969 -
1622928404.3991127-UTR-Ecto-sp9_F_contig115:56583..567041622928404.3991127-UTR-Ecto-sp9_F_contig115:56583..56704Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 56584..56704 -
1692277859.897173-UTR-Ecto-sp9_F_contig115:56583..567041692277859.897173-UTR-Ecto-sp9_F_contig115:56583..56704Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig115 56584..56704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928404.3509054-CDS-Ecto-sp9_F_contig115:54527..546031622928404.3509054-CDS-Ecto-sp9_F_contig115:54527..54603Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 54528..54603 -
1692277859.849745-CDS-Ecto-sp9_F_contig115:54527..546031692277859.849745-CDS-Ecto-sp9_F_contig115:54527..54603Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 54528..54603 -
1622928404.3616915-CDS-Ecto-sp9_F_contig115:54945..553881622928404.3616915-CDS-Ecto-sp9_F_contig115:54945..55388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 54946..55388 -
1692277859.857102-CDS-Ecto-sp9_F_contig115:54945..553881692277859.857102-CDS-Ecto-sp9_F_contig115:54945..55388Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 54946..55388 -
1622928404.3773072-CDS-Ecto-sp9_F_contig115:55699..557441622928404.3773072-CDS-Ecto-sp9_F_contig115:55699..55744Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 55700..55744 -
1692277859.8685641-CDS-Ecto-sp9_F_contig115:55699..557441692277859.8685641-CDS-Ecto-sp9_F_contig115:55699..55744Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig115 55700..55744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig115.1274.1

>prot_Ecto-sp9_F_contig115.1274.1 ID=prot_Ecto-sp9_F_contig115.1274.1|Name=mRNA_Ecto-sp9_F_contig115.1274.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=188bp
MSKALLMSCPEGGRETNTNHGGSCLGGSLDEPPMPSTPPPPLPASIATPP
PLPARTSLVGLNPKRPLPARPTRGSGSGSISAEQRPAAAKGNIWLAKAGL
TRKNVAGSSSPPPAPPETPPRESGSWRREGGTPTHLAGGRAGGGMAAARA
KGASGAWAKLHRRLEEESKNFNGKRRAEVVPPVVTSG*
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mRNA from alignment at Ecto-sp9_F_contig115:53212..56704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig115.1274.1 ID=mRNA_Ecto-sp9_F_contig115.1274.1|Name=mRNA_Ecto-sp9_F_contig115.1274.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3493bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:53212..56704- (Ectocarpus species9 EcSCA_722f female)
CAGGGACAAGCTGAACGTGTTCGAAGGGGCGTCCGGTTCGAAGGTCGGCA
AGGAGAAACCTGGAAATCGGTCGAGTGTCGGTGCCCTTCACGGCAGGGGG
CTGGTCACCGCCTGGGCCAAGGTAAGTTGTCGCAAGCACTATTATTCTGG
ATGCATGTACAGTCAGTAGGCGCTTCCGCGGTTTTGGAGGCAGGTTGGCT
TCCACTTTTCTGGGTTCGTCGGCACAGACTAACTGCCGTATCGTTTTACC
CTTTCTTCCGCGCAAGGATTTAGGGGGTCGGATGTTGCCCATTCAGCAAG
GTGCGGCTCGTCGCCGGCCGGCATCGGTTACCTTTCCCGAGGCAACCATA
ACATTTTACCAAATAGAAGCGATTCATCCATCTGTTTTCTACCCAATTCA
CATCATCTGCGCGGAGTGCGCGACGGAGATGACCTTCAAAGAAATCCTCA
CGGTAAAGAACTTTCCACGAGGATCTCGGTCGTCACCCGTCGACGACAAC
GAGGCTACCCAGCCGTTCGCTTCCGTACCTCTCTCCTTCGATATTTTTTC
TCTCTCTTCAGCACATTTTTTTTATTTCGTCGTACTGCTGTAACACTTTA
TCGACAACGAATCGAAAACGAGCGCTATGGTTCTCTAAGAGTGCTGCGTC
GTCTGATTTCCTTCCGATGGGAACGTGTACCTCTCAGCAAAGTTTAACCC
GTCCTCCCTTTACGTGCTCCCCATCGCTCCCCCAGAAAACGACGGATCAC
CACCCCGCCTCCACCGCGATCAACGAACAAGACAGCAGCGGGCGGTCCCC
GCCTCCTCCTTGGTCTACCGGAGGCCGGACACGCTCGCCGCCGCCCCGCG
CCGTCGACTCGGACGAGCAGGAGGAGTTTACGTGGAAGGCCGGACCGTCA
CCTTGCCGACTGAAGGGGAGGCCAAGCCTAGGCCTTATCCGCAACGGGCA
GGTCCGGATCATGTCCAAGGCGTTGCTGATGTCTTGTCCGGAGGGCGGGC
GCGAGGTGAGGTGGTTGCCACGGGCGATATGAGGGTGGGGCGGGGTTTTC
GAGCCTGCCGTGTGGGTCTGGAAAACGGGCCTCGCTTTTTTGTTTGAGTG
CAGCTGCAGTCGCTGGCTGAGCACGACATGTGCATAGTGTTGAAGATCCC
GACATTTGTTGAGAGACAAGTCGCTGGTGGAGTGAGGGCAATATCAGTTG
CGACTCTTCCCGTGTTGCCTACAGATGACAAATGTTCGTAGTAACCTCCC
ACCAACTCCCACCTTTTCCCGTCTCTCGCTGTCTCTCGTCCTGGCATATC
CGTGTCTCCCGCATAGACTAACACCAATCACGGAGGTAGTTGCTTGGGCG
GGAGCCTTGACGAGCCACCGATGCCATCGACCCCGCCACCGCCGCTGCCA
GCTTCAATCGCCACACCGCCCCCGCTCCCCGCCCGCACGAGCTTGGTTGG
TCTTAACCCCAAGCGGCCCCTCCCGGCACGACCAACCCGTGGCAGCGGCA
GCGGCAGTATCAGCGCCGAGCAACGTCCGGCAGCGGCCAAGGGAAACATC
TGGTTGGCGAAAGCCGGGTTGACTCGCAAAAACGTTGCAGGGTCGTCGTC
CCCCCCGCCTGCACCGCCGGAGACGCCACCTCGCGAAAGTGGTTCGTGGC
GGCGGGAGGGGGGGACGCCCACACACCTTGCTGGCGGTCGTGCGGGCGGC
GGGATGGCCGCGGCGAGGGCCAAGGGCGCGAGCGGGGCTTGGGCCAAGCT
GCATCGCAGGTGCGGTTGTAGGGGCCGGAGCGCTCCGCTTTGTAACGTGT
GGCGCGCAGTGAGTTTCGGGAGGGCAACGGTGCCGTTGACTCTCTTTGGG
CGCCTGTCGTGCGACCCTATGCTTTCGACTCGTGGATGTTGTCTTTCGTT
CACCCTCAGCACTAGTGAGTGCCCAATACCTGACAGCCTGGGGCCTGGTT
CTGGAAAGCCTGCTGCTGTGTATAACGGTCGCAACCGTTTGTATTGAAAA
AAGTAGATGGGTGAAAATTGTAGCGATCGCGGGTTGCTCGTAGCCCTTTT
CGCCAATGTGTTTCCCCCTTTATTCTTGGCCTCCCGCCCGGATCGCTGCA
GGCTCGAGGAGGAAAGCAAGAACTTTAACGGGAAAAGGCGCGCCGAGGTC
GTGCCTCCCGTGGTCACCAGCGGGTGATATATTCTGCTGGACGGCCTATT
GGTGCGGGTGCAACGTCGGGTGCGGTGAGACGGATGCCGCTAGCAATAGG
TTGCAATCAGCCAGACCTCGAGCAGTGCGGCACTCACAAGCCGAGCTGGA
GAGGGGCTAACACATACGTCACCGGTGGCGGGAACAAGCTCAATGTATTC
AATAGCACGGGGGTGGAGGTGGAGCTGACGAGCATCGTGTGTGGGGGGTG
CCTACCCGTCAGGGTGCGCAAGGTTTCACCCAACCCCGTACTCGACGGAG
CACCGTTCATATTTTGTAGTGTTCCTGACCGCGGCTGCTCGTGAGTCTAC
ACATGGGGGGAAGTACCGTGCGAGTTTTTGTCTTGGTTGGGGATGGTCGC
AAGCATCTACACTAAATTGCACAAACTAGTGCATGTTGATACAAGGGTTT
TTCACATCAGTTTGCCGTAAGCGTGTTTGTTTAGAACGATCGTGTAAGTG
AGCAAGAAGGAAGTAATGTGGCCTTGTGCTTTTTTTGCTTGCTGCGTGGT
TTTCGCGTGTGTGAGTTGTGGTACGTTATGGAAGAGATAGTCCCGAGGGA
TTGAAGAGGAATGGAAATATGACAATGCACTAGAGGTGATGTCGGGCAAC
AAGGAGCGGTACGTCGGTCCTTGGTGCGGGGCGAAAAAACAATGTTTACA
TGTTTTTGCTTGGCTGTTCTCGTCGTGATCAATATGAAAGGCGGGGTGTT
GTTTCGATGTAATCGTTTTTCATTGTCGCTGTCGCTATCGCTGTCGCTGT
CAAACTGTTGTTGTTGTCGTCGTCGTCGCTTTTGATGTGGTGTTCATGTT
AAAAGCAGCTGTGACTTCTTCCATCTCGTACGCCATCTTCCGTACTATTA
TAGTCCAGCTGGTGTACGAACACGGCACTTTCTTCTCTCGAGAACACAAG
TTAGCCCTGTGTGTTGTATTTGACTTGCAGAGAAGATCCTTCCCACCTCC
AGGGTGTGGCATGAGGTTAGCCTGGTCAGCAGTATATATCCCGACAATGA
TCTTCTTTCGGGCTTCGCAGGGATCGGAGGAATGCTTTCTCAGGATAGTT
TTGTTGGTAGTGGCTCGTTTTGCTGACGTACCCACCGCGTGGAGCAACGG
CCTCTATTTTTGCTTTTCTTTGTATCACAGCAGTGGTTTGATTTTTGTTT
TTCTGAACCTGTTGGGAAGTCTGTCGTTGCAATTGGTGGCGCTGGATGTT
TTTGTGTGTTTTTGTCGAAGTGTTTGAGTTTCTTTTTTGGGGTTGGCTTG
GGACCACGGAAATTCGTTTCATCGCCTCGTTCGAAGAGTAAAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig115:53212..56704-

>mRNA_Ecto-sp9_F_contig115.1274.1 ID=mRNA_Ecto-sp9_F_contig115.1274.1|Name=mRNA_Ecto-sp9_F_contig115.1274.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1128bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:53212..56704- (Ectocarpus species9 EcSCA_722f female)
ATGTCCAAGGCGTTGCTGATGTCTTGTCCGGAGGGCGGGCGCGAGATGTC
CAAGGCGTTGCTGATGTCTTGTCCGGAGGGCGGGCGCGAGACTAACACCA
ATCACGGAGGTAGTTGCTTGGGCGGGAGCCTTGACGAGCCACCGATGCCA
TCGACCCCGCCACCGCCGCTGCCAGCTTCAATCGCCACACCGCCCCCGCT
CCCCGCCCGCACGAGCTTGGTTGGTCTTAACCCCAAGCGGCCCCTCCCGG
CACGACCAACCCGTGGCAGCGGCAGCGGCAGTATCAGCGCCGAGCAACGT
CCGGCAGCGGCCAAGGGAAACATCTGGTTGGCGAAAGCCGGGTTGACTCG
CAAAAACGTTGCAGGGTCGTCGTCCCCCCCGCCTGCACCGCCGGAGACGC
CACCTCGCGAAAGTGGTTCGTGGCGGCGGGAGGGGGGGACGCCCACACAC
CTTGCTGGCGGTCGTGCGGGCGGCGGGATGGCCGCGGCGAGGGCCAAGGG
CGCGAGCGGGGCTTGGGCCAAGCTGCATCGCAGACTAACACCAATCACGG
AGGTAGTTGCTTGGGCGGGAGCCTTGACGAGCCACCGATGCCATCGACCC
CGCCACCGCCGCTGCCAGCTTCAATCGCCACACCGCCCCCGCTCCCCGCC
CGCACGAGCTTGGTTGGTCTTAACCCCAAGCGGCCCCTCCCGGCACGACC
AACCCGTGGCAGCGGCAGCGGCAGTATCAGCGCCGAGCAACGTCCGGCAG
CGGCCAAGGGAAACATCTGGTTGGCGAAAGCCGGGTTGACTCGCAAAAAC
GTTGCAGGGTCGTCGTCCCCCCCGCCTGCACCGCCGGAGACGCCACCTCG
CGAAAGTGGTTCGTGGCGGCGGGAGGGGGGGACGCCCACACACCTTGCTG
GCGGTCGTGCGGGCGGCGGGATGGCCGCGGCGAGGGCCAAGGGCGCGAGC
GGGGCTTGGGCCAAGCTGCATCGCAGGCTCGAGGAGGAAAGCAAGAACTT
TAACGGGAAAAGGCGCGCCGAGGTCGTGCCTCCCGTGGTCACCAGCGGGT
GAGCTCGAGGAGGAAAGCAAGAACTTTAACGGGAAAAGGCGCGCCGAGGT
CGTGCCTCCCGTGGTCACCAGCGGGTGA
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