mRNA_Ecto-sp9_F_contig11457.1246.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11457.1246.1
Unique NamemRNA_Ecto-sp9_F_contig11457.1246.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.460e-9
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   13 QGNHDEAVPLNERATEIWMKALGPEHPTVATA 108
            QGN+ EAVPLNERATEIW+KALGPEHP VATA
Sbjct: 1064 QGNYAEAVPLNERATEIWIKALGPEHPQVATA 1095
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.160e-8
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   13 QGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            QG + EA PL  RATEIW +ALGPEHP VATALNNRA L
Sbjct:  657 QGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGL 695
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN14_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.660e-7
Identity = 28/38 (73.68%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   16 GNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            G   EA PL  RATEIW  ALGPEHP VATALNNRA L
Sbjct:    2 GKFAEAEPLYRRATEIWETALGPEHPHVATALNNRAGL 39
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Tetratricopeptide (repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   13 QGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            QGN+ +A PL +R+  IW KALG EHP VAT+LNN A L
Sbjct:    9 QGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: CHAT (domain-containing protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RRL7_SYNP3)

HSP 1 Score: 57.0 bits (136), Expect = 4.780e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 KLSRQGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            KL +QG ++EA+PL +R+  IW KALGP HP VAT LNN   L
Sbjct:   54 KLYQQGRYNEALPLYQRSLAIWEKALGPNHPNVATGLNNLGAL 96
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.300e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 LSRQGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            L  QG +DE  PL  RA EI  K LGP+HP +AT+LNNRAR+
Sbjct:   47 LESQGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRARM 88
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Tetratricopeptide (repeat-containing protein (Fragment) n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C7W0_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 6.010e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 KLSRQGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            +L RQG + EA+PL E+A  I  KALGP+HP+VAT+LNN A L
Sbjct:    6 ELYRQGKYGEAIPLAEKALAIREKALGPDHPSVATSLNNLAEL 48
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.870e-6
Identity = 26/39 (66.67%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   13 QGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            QG + E  P   RAT IW KALGP HP VATALNNRA L
Sbjct:  602 QGEYAEGEPQYARATYIWEKALGPAHPQVATALNNRALL 640
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E7RJA7_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.990e-6
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 LSRQGNHDEAVPLNERATEIWMKALGPEHPTVATALNN 117
            L  +G++ EA PL  RA  IW KALGPEHP VATALNN
Sbjct:    5 LYDKGSYAEARPLFARALAIWEKALGPEHPRVATALNN 42
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.460e-5
Identity = 25/39 (64.10%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   13 QGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARL 129
            QGN+ EA PL ER+  I  K LGP+HP VAT LNNRA L
Sbjct:  205 QGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGL 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11457.1246.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
Uncharacterized2.460e-987.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
NB-ARC1.160e-874.36domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.660e-773.68protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tetratricopeptide2.180e-761.54repeat-containing protein (Fragment) n=1 Tax=Cyano... [more]
CHAT4.780e-758.14domain-containing protein n=1 Tax=Synechococcus sp... [more]
TPR5.300e-759.52repeat-containing protein n=1 Tax=Ectocarpus silic... [more]
Tetratricopeptide6.010e-760.47repeat-containing protein (Fragment) n=1 Tax=Okean... [more]
Uncharacterized5.870e-666.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.990e-665.79protein (Fragment) n=1 Tax=Planctomycetes bacteriu... [more]
Uncharacterized1.460e-564.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11457contigEcto-sp9_F_contig11457:2345..3299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size348
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11457.1246.1prot_Ecto-sp9_F_contig11457.1246.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11457 2345..3299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928395.163534-CDS-Ecto-sp9_F_contig11457:2344..24791622928395.163534-CDS-Ecto-sp9_F_contig11457:2344..2479Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11457 2345..2479 +
1692277857.847566-CDS-Ecto-sp9_F_contig11457:2344..24791692277857.847566-CDS-Ecto-sp9_F_contig11457:2344..2479Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11457 2345..2479 +
1622928395.1822202-CDS-Ecto-sp9_F_contig11457:2745..28711622928395.1822202-CDS-Ecto-sp9_F_contig11457:2745..2871Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11457 2746..2871 +
1692277857.8614326-CDS-Ecto-sp9_F_contig11457:2745..28711692277857.8614326-CDS-Ecto-sp9_F_contig11457:2745..2871Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11457 2746..2871 +
1622928395.1977367-CDS-Ecto-sp9_F_contig11457:3212..32991622928395.1977367-CDS-Ecto-sp9_F_contig11457:3212..3299Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11457 3213..3299 +
1692277857.870318-CDS-Ecto-sp9_F_contig11457:3212..32991692277857.870318-CDS-Ecto-sp9_F_contig11457:3212..3299Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11457 3213..3299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11457.1246.1

>prot_Ecto-sp9_F_contig11457.1246.1 ID=prot_Ecto-sp9_F_contig11457.1246.1|Name=mRNA_Ecto-sp9_F_contig11457.1246.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=116bp
KLSRQGNHDEAVPLNERATEIWMKALGPEHPTVATALNNRARLGAGKYDE
AEPLYERSLAIREKALGPEHPDVAESLNNRAGLLYAQGKYDEADPLYQRA
LAIDEKVLGPDHPDVA
back to top

mRNA from alignment at Ecto-sp9_F_contig11457:2345..3299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11457.1246.1 ID=mRNA_Ecto-sp9_F_contig11457.1246.1|Name=mRNA_Ecto-sp9_F_contig11457.1246.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=955bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11457:2345..3299+ (Ectocarpus species9 EcSCA_722f female)
AAACTTTCTCGACAGGGCAACCATGACGAAGCTGTACCCCTTAATGAACG
GGCCACGGAGATTTGGATGAAAGCCCTAGGTCCTGAGCACCCGACAGTGG
CAACAGCGCTCAACAACCGGGCGCGGTTGGGCGCGGTTGCTGAGATAATG
TTCCTCCGCATTTCGACGTTTACACTGAATTACGCTGTACCACGCTGTCC
ACCGCACACAGGGCAAACACGCAGAGGCGGACCCTCTGTACCTTCGAGCT
ATTGAGATTGGAGAGAAAACTCTTGGCCCTGACCACCCAGATCTTGCTAC
TCGGCTCAACAACCGGGCGGTGTTGTTGAGCATTTGTTCCTCCGCATTCG
ATGTCTTCACCCCTACCTTTGACACATTTTCGTCATTTCGGGATGTTTCA
GGGCAAGTACGACGAGGCAGAACCGTTGTATGAACGTTCCCTTGCCATCC
GCGAGAAAGCACTTGGCCCGGAGCATCCGGATGTAGCCGAGTCGCTCAAC
AACCGGGCGGGGTTGTTGTACGCTCAGGTGAGAGCTATCAGAAAATTCCA
GGAAGTTTCTTGTGGTACCTGATAGATTTCGGGAGTGCTCAACAACAGGG
CGGGGTTGTTGAGCAATTGTTAGTTCGTTGTCAATCCCCGCTAGCATTGA
CCACGCTTCTGACATGCTTGCCCTTCACGTCTCAGGGTAAGTTCGCCGAG
GCCGAGCCTCTGTACAGGCGGGCGACCGAGATTTGGGAGACAGCGTTAGG
TCCTGAGCACCCGAACGTGGCCACAGCGCTCAACAACCGGGCGGGGTTGT
TGAGCATTTGTTCCTCCGCAGTATATTTACTAATTTAGCAACAACACCGC
TCGTCGCTCGTGTTTTAGGGCAAGTACGACGAAGCTGATCCGTTGTACCA
ACGGGCCCTTGCGATAGACGAGAAGGTGCTGGGTCCGGATCACCCCGACG
TGGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11457:2345..3299+

>mRNA_Ecto-sp9_F_contig11457.1246.1 ID=mRNA_Ecto-sp9_F_contig11457.1246.1|Name=mRNA_Ecto-sp9_F_contig11457.1246.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11457:2345..3299+ (Ectocarpus species9 EcSCA_722f female)
AAACTTTCTCGACAGGGCAACCATGACGAAGCTGTACCCCTTAATGAACG
GGCCACGGAGATTTGGATGAAAGCCCTAGGTCCTGAGCACCCGACAGTGG
CAACAGCGCTCAACAACCGGGCGCGGTTGGGCGCGAAACTTTCTCGACAG
GGCAACCATGACGAAGCTGTACCCCTTAATGAACGGGCCACGGAGATTTG
GATGAAAGCCCTAGGTCCTGAGCACCCGACAGTGGCAACAGCGCTCAACA
ACCGGGCGCGGTTGGGCGCGGGCAAGTACGACGAGGCAGAACCGTTGTAT
GAACGTTCCCTTGCCATCCGCGAGAAAGCACTTGGCCCGGAGCATCCGGA
TGTAGCCGAGTCGCTCAACAACCGGGCGGGGTTGTTGTACGCTCAGGGCA
AGTACGACGAGGCAGAACCGTTGTATGAACGTTCCCTTGCCATCCGCGAG
AAAGCACTTGGCCCGGAGCATCCGGATGTAGCCGAGTCGCTCAACAACCG
GGCGGGGTTGTTGTACGCTCAGGGCAAGTACGACGAAGCTGATCCGTTGT
ACCAACGGGCCCTTGCGATAGACGAGAAGGTGCTGGGTCCGGATCACCCC
GACGTGGCTGGCAAGTACGACGAAGCTGATCCGTTGTACCAACGGGCCCT
TGCGATAGACGAGAAGGTGCTGGGTCCGGATCACCCCGACGTGGCT
back to top