mRNA_Ecto-sp9_F_contig11446.1237.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig11446.1237.1
Unique Name	mRNA_Ecto-sp9_F_contig11446.1237.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 8.440e-60
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = 2

Query:   32 MVRGFRASCGKVLHGKDATAAGELRRCFACDRPGSRDGCSTSWRHVGDSETWARLGEWSASVGSAWRHDRDLQQNPLQVGKCICSRTDCVVVLYMTYMWRRQREEEGALHKMVVGQRSPMGR 397
            MVR  RASCGKV+HGK+  AAGELRRCFACDRPGSRDGCST+W+HV DSE WA LGEWSA+VG  W H+RDL  +PL+ G+CIC R DCVV LY  Y  RRQREE+GALH MV+GQRSPMGR
Sbjct:    1 MVRQRRASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTNWQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.140e-33
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 2

Query:   32 MVRGFRASCGKVLHGKDATAAGELRRCFACDRPGSRDGCSTSWRHVGDSETWARLGEWSASVGSAWRHDRDLQQNPLQVGKCICSRTDC 298
            M RGF  SCG+ +HGK+A   G L  CFAC RPGSRDGCS+ W+HVG +  WA +GEWSA VG  W H+RDLQ +PL+VG+CIC+R DC
Sbjct:    1 MTRGFLGSCGRAVHGKEAPGGG-LGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWSAMVGQEWPHERDLQGDPLKVGECICTRPDC 88

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.890e-17
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 2

Query:   62 KVLHGKDATAAGELRRCFACDRPGSRDGCSTSWRHVGDSETWARLGEWSASVGSAWRHDRDLQQNPLQVGK 274
            + +HGK+A   G    CFAC RPGSRDGCS+ W+HVG    WA LGEWSA VG  W H+RD  + P Q G+
Sbjct:    7 RAVHGKEAPGGGP-GLCFACGRPGSRDGCSSRWKHVGQGTYWAELGEWSAIVGEEWPHERDTCR-PSQSGR 75

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-9
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 1

Query:  733 FWSPPKPEGGG*RKMRPDRIVMLPRATYRGRGCSSTEAWFIWET 864
            F  P K  G   +   PDRIVMLPRATYR R CSSTE WF+WET
Sbjct:   11 FLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.790e-7
Identity = 29/59 (49.15%), Postives = 32/59 (54.24%), Query Frame = 1

Query:  733 FWSPPKPEGGG*RKMRPDRIVMLPRATYRGRGCSSTEAWFIWETGRGGEEGRKPAIFFS 909
            F  P K  G   +   P  +V+LPRATY GR CSSTEAWFIW     G E    A FF 
Sbjct:  118 FLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFFD 176

[Close]

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE78_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 4.980e-5
Identity = 27/40 (67.50%), Postives = 27/40 (67.50%), Query Frame = 3

Query:   33 WSVVSAPRAAKFCTAKMRQQQGSFAVVSLVTVRVAATGAR 152
            W      RA K CTAK RQQ GSFA  S VTVRVAATGAR
Sbjct:   11 WLPRLVRRAGKLCTAKKRQQHGSFAGASHVTVRVAATGAR 50

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig11446.1237.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6


Match Name	E-value	Identity	Description
Uncharacterized	8.440e-60	73.77	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	1.140e-33	61.80	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	7.890e-17	54.93	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	3.230e-9	63.64	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	8.790e-7	49.15	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.980e-5	67.50	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig11446	contig	Ecto-sp9_F_contig11446:667..2644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1018
Cds size	762
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig11446.1237.1	prot_Ecto-sp9_F_contig11446.1237.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig11446 698..2419 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928394.31622-UTR-Ecto-sp9_F_contig11446:666..697	1622928394.31622-UTR-Ecto-sp9_F_contig11446:666..697	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11446 667..697 +
1692277857.3559377-UTR-Ecto-sp9_F_contig11446:666..697	1692277857.3559377-UTR-Ecto-sp9_F_contig11446:666..697	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11446 667..697 +
1622928394.369951-UTR-Ecto-sp9_F_contig11446:2419..2644	1622928394.369951-UTR-Ecto-sp9_F_contig11446:2419..2644	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11446 2420..2644 +
1692277857.4031787-UTR-Ecto-sp9_F_contig11446:2419..2644	1692277857.4031787-UTR-Ecto-sp9_F_contig11446:2419..2644	Ectocarpus species9 EcSCA_722f female	UTR	Ecto-sp9_F_contig11446 2420..2644 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928394.3300035-CDS-Ecto-sp9_F_contig11446:697..1084	1622928394.3300035-CDS-Ecto-sp9_F_contig11446:697..1084	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11446 698..1084 +
1692277857.3664615-CDS-Ecto-sp9_F_contig11446:697..1084	1692277857.3664615-CDS-Ecto-sp9_F_contig11446:697..1084	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11446 698..1084 +
1622928394.343813-CDS-Ecto-sp9_F_contig11446:1816..1947	1622928394.343813-CDS-Ecto-sp9_F_contig11446:1816..1947	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11446 1817..1947 +
1692277857.3771555-CDS-Ecto-sp9_F_contig11446:1816..1947	1692277857.3771555-CDS-Ecto-sp9_F_contig11446:1816..1947	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11446 1817..1947 +
1622928394.356336-CDS-Ecto-sp9_F_contig11446:2175..2419	1622928394.356336-CDS-Ecto-sp9_F_contig11446:2175..2419	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11446 2176..2419 +
1692277857.3917966-CDS-Ecto-sp9_F_contig11446:2175..2419	1692277857.3917966-CDS-Ecto-sp9_F_contig11446:2175..2419	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig11446 2176..2419 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig11446:667..2644+
coding sequence from alignment at Ecto-sp9_F_contig11446:667..2644+

protein sequence of mRNA_Ecto-sp9_F_contig11446.1237.1

>prot_Ecto-sp9_F_contig11446.1237.1 ID=prot_Ecto-sp9_F_contig11446.1237.1|Name=mRNA_Ecto-sp9_F_contig11446.1237.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=254bp
MVRGFRASCGKVLHGKDATAAGELRRCFACDRPGSRDGCSTSWRHVGDSE
TWARLGEWSASVGSAWRHDRDLQQNPLQVGKCICSRTDCVVVLYMTYMWR
RQREEEGALHKMVVGQRSPMGRYLSTGSQVRALLQHVELEGRVLDCCGAA
QDAVYTVLSSHGLRVATNDMNPTLVADTHHLDAAADAFLEAYVKETVRLD
WVVTSPPYKHAFAIFETGDAGRAYGSDLQAEVNFSGAHQNQRAVAKGKCA
PTG*

mRNA from alignment at Ecto-sp9_F_contig11446:667..2644+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig11446.1237.1 ID=mRNA_Ecto-sp9_F_contig11446.1237.1|Name=mRNA_Ecto-sp9_F_contig11446.1237.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1978bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11446:667..2644+ (Ectocarpus species9 EcSCA_722f female)
TATACCGCCATTTTCAACGGTTTTCCTCAGCATGGTCCGTGGTTTCCGCG
CCTCGTGCGGCAAAGTTCTGCACGGCAAAGATGCGACAGCAGCAGGGGAG
CTTCGCCGTTGTTTCGCTTGTGACCGTCCGGGTAGCCGCGACGGGTGCTC
GACAAGTTGGCGGCATGTGGGGGACTCGGAAACATGGGCTAGGCTGGGCG
AGTGGTCTGCGAGTGTTGGGTCAGCCTGGCGTCATGATCGCGATCTTCAA
CAGAACCCTCTCCAGGTGGGAAAGTGCATCTGTTCCCGGACCGACTGCGT
GGTTGTTTTGTACATGACGTACATGTGGAGGCGCCAGAGGGAAGAAGAAG
GAGCTTTGCACAAAATGGTGGTTGGACAGCGGTCGCCGATGGGCCGGTAT
CTCTCGACGGGATCTCAGGTATGATGCCGCAGATACACCACCTCTGTCTA
CAGCAGTGTAGAGTAGGGAGCGAGAGAACGCACGGGGGTGTCAGCATTTA
TCATAGCGTGATTTCTCCACAACCACTGCCGACAAATATGACGTCGAGGT
CTTTCCTGAGAGGTATCGGTTGGTGTTCGCACCGTCATCTTCGTGGAGCA
ATAAAGGTTAGAAAAATGCTAACACCCCCATGCGTTCTCTCGCATCCTTA
CGGTAGGTCACTCAGTTGTATCATAGGCATGGCTCCGGGCGACTTCTAGA
CCGCGCGCAGACACCACACGTAGAAACAACCCTATCTCTTGTTTGGTTTC
TGCGCTCTGCCTCCCCACGTGACCGCATTTGCCTGTCGTGTTTTCCTGAG
ATCTCGACCGTCGCCATGTACTGTTGTTGATGGCATGGTACCGGGCGGTG
CCCGACCCATCTCTCAACACATGTCTCCCTCGCCCTGCTCCTTATTGAAC
GGTTAGCCTTCGTTGCTGTTTCTCACGTTAGCTCAATGGTAAATACGAGG
AATTTGAGGTCCTCTCCGTGTTGTGAAAAGAGCCTCGACCGCTCCCCCGA
AGACATCGGAAGAAGTAAATGTACTGTAGAGCGCCGCTCATTCTTTTTTC
TGCTGCCCGCACACTCCCTCTGCCAGGTAGCACCTACCATCTACAGTTGT
AGTAACAACAATAGATGAAGTATCCACCACGTTGCATTCGCGATTTTCAG
GTGCGAGCTCTTCTGCAACACGTGGAGCTGGAAGGCAGGGTACTCGATTG
CTGTGGCGCCGCCCAAGACGCGGTCTACACGGTCCTGAGTTCACACGGTC
TCCGTGTTGCAACAAACGACATGAACCCGACGTTTGTGTGTGTCTCAGGC
CGGCTTCGGTGCAACCAAGCACTGGATTCGATATGTTAGCGTGGAGGTGG
TAGGCTGTGCTCGCACACACGGCCGGCAGTGTAGAAAAGGGCCCTTCCAT
GATGCCGGCCACAATTAATTCAAGTGGCAAATGTTCATTTTTTTACGTTT
ATTTTTTAACTTGAAATCGTTGGCGGCGCTTTTTTTTTTTTGTACCTCCC
TACCCTCAGATTGGTCGCAGACACCCACCACCTGGACGCCGCCGCAGACG
CTTTTCTCGAGGCGTACGTCAAGGAAACGGTGCGTCTGGACTGGGTCGTG
ACGAGCCCACCCTACAAGCACGCCTTCGCCATTTTTGAAACAGGCGATGC
GGGTCGGGCGTATGGGAGTGACCTTCAAGCTGAGGTTAACTTTTCTGGAG
CCCACCAAAACCAGAGGGCGGTGGCTAAAGGAAAATGCGCCCCGACAGGA
TAGTGATGCTCCCCCGCGCTACGTACCGCGGAAGAGGATGTAGCTCTACT
GAGGCGTGGTTTATATGGGAGACAGGGCGGGGTGGCGAAGAAGGCCGCAA
GCCCGCGATTTTCTTTTCTGTGCCTTAGGGTGCTCTCTAGAATTGTAGGT
GTGCTTGTGTGAAAGTTGCATAGCAAGTACGCGAGTGCCGGAAGTACTTG
CTCTTGAAGCTGATTGGAATTTTCTACG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11446:667..2644+

>mRNA_Ecto-sp9_F_contig11446.1237.1 ID=mRNA_Ecto-sp9_F_contig11446.1237.1|Name=mRNA_Ecto-sp9_F_contig11446.1237.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11446:667..2644+ (Ectocarpus species9 EcSCA_722f female)
ATGGTCCGTGGTTTCCGCGCCTCGTGCGGCAAAGTTCTGCACGGCAAAGA
TGCGACAGCAGCAGGGGAGCTTCGCCGTTGTTTCGCTTGTGACCGTCCGG
GTAGCCGCGACGGGTGCTCGACAAGTTGGCGGCATGTGGGGGACTCGGAA
ACATGGGCTAGGCTGGGCGAGTGGTCTGCGAGTGTTGGGTCAGCCTGGCG
TCATGATCGCGATCTTCAACAGAACCCTCTCCAGGTGGGAAAGTGCATCT
GTTCCCGGACCGACTGCGTGGTTGTTTTGTACATGACGTACATGTGGAGG
CGCCAGAGGGAAGAAGAAGGAGCTTTGCACAAAATGGTGGTTGGACAGCG
GTCGCCGATGGGCCGGTATCTCTCGACGGGATCTCAGATGGTCCGTGGTT
TCCGCGCCTCGTGCGGCAAAGTTCTGCACGGCAAAGATGCGACAGCAGCA
GGGGAGCTTCGCCGTTGTTTCGCTTGTGACCGTCCGGGTAGCCGCGACGG
GTGCTCGACAAGTTGGCGGCATGTGGGGGACTCGGAAACATGGGCTAGGC
TGGGCGAGTGGTCTGCGAGTGTTGGGTCAGCCTGGCGTCATGATCGCGAT
CTTCAACAGAACCCTCTCCAGGTGGGAAAGTGCATCTGTTCCCGGACCGA
CTGCGTGGTTGTTTTGTACATGACGTACATGTGGAGGCGCCAGAGGGAAG
AAGAAGGAGCTTTGCACAAAATGGTGGTTGGACAGCGGTCGCCGATGGGC
CGGTATCTCTCGACGGGATCTCAGGTGCGAGCTCTTCTGCAACACGTGGA
GCTGGAAGGCAGGGTACTCGATTGCTGTGGCGCCGCCCAAGACGCGGTCT
ACACGGTCCTGAGTTCACACGGTCTCCGTGTTGCAACAAACGACATGAAC
CCGACGTGCGAGCTCTTCTGCAACACGTGGAGCTGGAAGGCAGGGTACTC
GATTGCTGTGGCGCCGCCCAAGACGCGGTCTACACGGTCCTGAGTTCACA
CGGTCTCCGTGTTGCAACAAACGACATGAACCCGACATTGGTCGCAGACA
CCCACCACCTGGACGCCGCCGCAGACGCTTTTCTCGAGGCGTACGTCAAG
GAAACGGTGCGTCTGGACTGGGTCGTGACGAGCCCACCCTACAAGCACGC
CTTCGCCATTTTTGAAACAGGCGATGCGGGTCGGGCGTATGGGAGTGACC
TTCAAGCTGAGGTTAACTTTTCTGGAGCCCACCAAAACCAGAGGGCGGTG
GCTAAAGGAAAATGCGCCCCGACAGGATAGATTGGTCGCAGACACCCACC
ACCTGGACGCCGCCGCAGACGCTTTTCTCGAGGCGTACGTCAAGGAAACG
GTGCGTCTGGACTGGGTCGTGACGAGCCCACCCTACAAGCACGCCTTCGC
CATTTTTGAAACAGGCGATGCGGGTCGGGCGTATGGGAGTGACCTTCAAG
CTGAGGTTAACTTTTCTGGAGCCCACCAAAACCAGAGGGCGGTGGCTAAA
GGAAAATGCGCCCCGACAGGATAG