mRNA_Ecto-sp9_F_contig11442.1235.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11442.1235.1
Unique NamemRNA_Ecto-sp9_F_contig11442.1235.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11442.1235.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.890e-24
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 2 
Query:  119 VRSIQDEIRGVERKIEDAAEETAEVVKKIDDIEAAIAGGSGYLGMTDPEALLKQLGRKEEQ 301
            +R++QD+IRGVERK EDA +ETAEVVKKIDDIEAAIAGGS YLGMTDPEALLKQLGRKEEQ
Sbjct:   34 IRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ 94
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BLAST of mRNA_Ecto-sp9_F_contig11442.1235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.020e-21
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 2 
Query:  119 VRSIQDEIRGVERKIEDAAEETAEVVKKIDDIEAAIAGGSGYLGMTDPEALLKQL 283
            +R++QDEIRGVERKIEDA EETAEVVKKIDDIEAAIAGG+ YLGMTDPEALLKQL
Sbjct:   41 IRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL 95
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BLAST of mRNA_Ecto-sp9_F_contig11442.1235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.130e-15
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  170 AAEETAEVVKKIDDIEAAIAGGSGYLGMTDPEALLKQLGRKEEQL 304
            A EETAEVVKKID IEAAIAGGS YLGMTDPEALLKQLGRKEEQL
Sbjct:   58 AEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQL 102
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11442.1235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.770e-11
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 HPVRGMTGLSAMSEGDEEEGGGDHDAREAANRIPAADEIRAV 126
            +PVRG+T LSA+SEG+EE+GGGDHD REAA   PAADEIRAV
Sbjct:    3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAV 44
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11442.1235.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.060e-10
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 HPVRGMTGLSAMSEGDEEEGGGDHDAREAANRIPAADEIRAV 126
            +PV GMT LSAMSEG EEEGGGDH AREAA+  PAADEIRAV
Sbjct:   71 YPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAV 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11442.1235.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized2.890e-2486.89protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.020e-2189.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.130e-1593.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.770e-1176.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.060e-1080.95protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11442contigEcto-sp9_F_contig11442:3249..3656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size408
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11442.1235.1prot_Ecto-sp9_F_contig11442.1235.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11442 3519..3641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928394.1149106-UTR-Ecto-sp9_F_contig11442:3248..35181622928394.1149106-UTR-Ecto-sp9_F_contig11442:3248..3518Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11442 3249..3518 -
1692277857.2483737-UTR-Ecto-sp9_F_contig11442:3248..35181692277857.2483737-UTR-Ecto-sp9_F_contig11442:3248..3518Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11442 3249..3518 -
1622928394.139468-UTR-Ecto-sp9_F_contig11442:3641..36561622928394.139468-UTR-Ecto-sp9_F_contig11442:3641..3656Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11442 3642..3656 -
1692277857.2726674-UTR-Ecto-sp9_F_contig11442:3641..36561692277857.2726674-UTR-Ecto-sp9_F_contig11442:3641..3656Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11442 3642..3656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928394.1276805-CDS-Ecto-sp9_F_contig11442:3518..36411622928394.1276805-CDS-Ecto-sp9_F_contig11442:3518..3641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11442 3519..3641 -
1692277857.2640054-CDS-Ecto-sp9_F_contig11442:3518..36411692277857.2640054-CDS-Ecto-sp9_F_contig11442:3518..3641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11442 3519..3641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11442.1235.1

>prot_Ecto-sp9_F_contig11442.1235.1 ID=prot_Ecto-sp9_F_contig11442.1235.1|Name=mRNA_Ecto-sp9_F_contig11442.1235.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=41bp
MTGLSAMSEGDEEEGGGDHDAREAANRIPAADEIRAVHPG*
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mRNA from alignment at Ecto-sp9_F_contig11442:3249..3656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11442.1235.1 ID=mRNA_Ecto-sp9_F_contig11442.1235.1|Name=mRNA_Ecto-sp9_F_contig11442.1235.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11442:3249..3656- (Ectocarpus species9 EcSCA_722f female)
CACCCGGTGCGAGGGATGACGGGCTTGAGCGCGATGAGCGAGGGCGACGA
GGAGGAAGGGGGTGGCGATCATGATGCGCGAGAAGCTGCCAATCGCATTC
CGGCGGCGGACGAGATCCGTGCGGTCCATCCAGGATGAGATCCGTGGTGT
AGAGCGCAAGATCGAGGATGCAGCGGAGGAGACGGCAGAGGTTGTCAAGA
AGATTGATGATATTGAGGCTGCTATTGCTGGGGGCTCCGGGTACCTCGGA
ATGACCGACCCCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCA
ACTAGCCAACTACGCAGCAAGGAGGAGCAGCTCCGCGAGCTCCTTTTGAA
GAAGGAGGACCGGCTCTCCAGGAGTGAGCAGCTCCGTGCCAACAACGCCC
CCGCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11442:3249..3656-

>mRNA_Ecto-sp9_F_contig11442.1235.1 ID=mRNA_Ecto-sp9_F_contig11442.1235.1|Name=mRNA_Ecto-sp9_F_contig11442.1235.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11442:3249..3656- (Ectocarpus species9 EcSCA_722f female)
ATGACGGGCTTGAGCGCGATGAGCGAGGGCGACGAGGAGGAAGGGGGTGG
CGATCATGATGCGCGAGAAGCTGCCAATCGCATTCCGGCGGCGGACGAGA
TCCGTGCGGTCCATCCAGGATGAATGACGGGCTTGAGCGCGATGAGCGAG
GGCGACGAGGAGGAAGGGGGTGGCGATCATGATGCGCGAGAAGCTGCCAA
TCGCATTCCGGCGGCGGACGAGATCCGTGCGGTCCATCCAGGATGA
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