mRNA_Ecto-sp9_F_contig11417.1218.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11417.1218.1
Unique NamemRNA_Ecto-sp9_F_contig11417.1218.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11417.1218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D6_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 7.010e-54
Identity = 100/135 (74.07%), Postives = 101/135 (74.81%), Query Frame = -2 
Query:    3 MQAAAAAWNNLGFGSGDLVGDNGXXXXXXXXXXXXXXREFRAGMPLPASDHNGAGGWKGMFDDVTRQEGETAADARSSAVDAVGVMAMSNGGGDVQPLFARAAGTRKTLESPAMPXXXXXXXXXDWDEAAAVAAF 407
            MQAAAAAW+NLG GSGDLVGDNG              REFR GMPLPA   NGAGGWKGMF DVTRQ GETAADARSSAVDA GVM MSNGGGDVQPLFARAA  RKTLESPAMP         DWDEAAAVAAF
Sbjct:    1 MQAAAAAWSNLGLGSGDLVGDNGGG------------REFRVGMPLPAGGRNGAGGWKGMFGDVTRQAGETAADARSSAVDAAGVMTMSNGGGDVQPLFARAADNRKTLESPAMPPVVGGRGGGDWDEAAAVAAF 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11417.1218.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.010e-5474.07protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11417contigEcto-sp9_F_contig11417:1658..2326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002340.1
Exons1
Model size669
Cds size669
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928391.5148683-CDS-Ecto-sp9_F_contig11417:1657..23261622928391.5148683-CDS-Ecto-sp9_F_contig11417:1657..2326Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11417 1658..2326 +
1692277856.0191302-CDS-Ecto-sp9_F_contig11417:1657..23261692277856.0191302-CDS-Ecto-sp9_F_contig11417:1657..2326Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11417 1658..2326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11417.1218.1prot_Ecto-sp9_F_contig11417.1218.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11417 1658..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11417.1218.1

>prot_Ecto-sp9_F_contig11417.1218.1 ID=prot_Ecto-sp9_F_contig11417.1218.1|Name=mRNA_Ecto-sp9_F_contig11417.1218.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=223bp
MNAATAAASSQSPPPPPPTGGGIAGDSKVFLVPAALAKSGWTSPPPLLMA
MTPTASTAEERASAAVSPSWRVTSSNMPFHPPAPLWSLAGSGIPARNSRP
PPPPPPPPPPPPPPLSPTRSPEPNPRLFHAAAAACISEALSDLPGRPLLL
LLLLPLGSCGRWYTCCCCCCCCCSQTWLGALRSQAKPPPSAPSRSSKSPP
PPPLLPLLRLPTGSYIGGRGEG*
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mRNA from alignment at Ecto-sp9_F_contig11417:1658..2326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11417.1218.1 ID=mRNA_Ecto-sp9_F_contig11417.1218.1|Name=mRNA_Ecto-sp9_F_contig11417.1218.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=669bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11417:1658..2326+ (Ectocarpus species9 EcSCA_722f female)
ATGAACGCCGCCACCGCCGCCGCCTCGTCCCAGTCGCCGCCACCACCCCC
GCCCACCGGCGGCGGCATCGCCGGGGACTCCAAAGTTTTCCTAGTGCCTG
CAGCCCTCGCGAAGAGCGGCTGGACGTCACCGCCCCCGTTGCTCATGGCC
ATGACCCCTACGGCGTCCACCGCCGAGGAGCGGGCGTCAGCGGCGGTTTC
TCCCTCCTGGCGAGTGACATCATCAAACATGCCTTTCCACCCACCGGCGC
CGTTGTGGTCACTGGCCGGTAGCGGCATCCCGGCTCGAAATTCTCGTCCG
CCGCCGCCACCGCCACCACCGCCGCCGCCGCCGCCACCGCCGTTATCGCC
AACAAGGTCGCCCGAACCGAATCCGAGGTTGTTCCACGCCGCTGCCGCCG
CTTGCATTTCTGAGGCTTTGTCCGATCTGCCAGGGCGGCCGTTGCTGCTG
CTGCTGCTGCTGCCGTTGGGCTCGTGCGGCCGCTGGTACACCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTCCCAGACTTGGCTCGGGGCCTTGAGGTCCC
AAGCCAAGCCCCCTCCTTCTGCTCCCTCCCGGTCATCGAAGTCGCCGCCG
CCGCCGCCGCTGCTGCCGCTGCTGCGTCTTCCCACTGGCTCGTACATCGG
TGGAAGGGGGGAAGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11417:1658..2326+

>mRNA_Ecto-sp9_F_contig11417.1218.1 ID=mRNA_Ecto-sp9_F_contig11417.1218.1|Name=mRNA_Ecto-sp9_F_contig11417.1218.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1338bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11417:1658..2326+ (Ectocarpus species9 EcSCA_722f female)
ATGAACGCCGCCACCGCCGCCGCCTCGTCCCAGTCGCCGCCACCACCCCC
GCCCACCGGCGGCGGCATCGCCGGGGACTCCAAAGTTTTCCTAGTGCCTG
CAGCCCTCGCGAAGAGCGGCTGGACGTCACCGCCCCCGTTGCTCATGGCC
ATGACCCCTACGGCGTCCACCGCCGAGGAGCGGGCGTCAGCGGCGGTTTC
TCCCTCCTGGCGAGTGACATCATCAAACATGCCTTTCCACCCACCGGCGC
CGTTGTGGTCACTGGCCGGTAGCGGCATCCCGGCTCGAAATTCTCGTCCG
CCGCCGCCACCGCCACCACCGCCGCCGCCGCCGCCACCGCCGTTATCGCC
AACAAGGTCGCCCGAACCGAATCCGAGGTTGTTCCACGCCGCTGCCGCCG
CTTGCATTTCTGAGGCTTTGTCCGATCTGCCAGGGCGGCCGTTGCTGCTG
CTGCTGCTGCTGCCGTTGGGCTCGTGCGGCCGCTGGTACACCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTCCCAGACTTGGCTCGGGGCCTTGAGGTCCC
AAGCCAAGCCCCCTCCTTCTGCTCCCTCCCGGTCATCGAAGTCGCCGCCG
CCGCCGCCGCTGCTGCCGCTGCTGCGTCTTCCCACTGGCTCGTACATCGG
TGGAAGGGGGGAAGGGTAGATGAACGCCGCCACCGCCGCCGCCTCGTCCC
AGTCGCCGCCACCACCCCCGCCCACCGGCGGCGGCATCGCCGGGGACTCC
AAAGTTTTCCTAGTGCCTGCAGCCCTCGCGAAGAGCGGCTGGACGTCACC
GCCCCCGTTGCTCATGGCCATGACCCCTACGGCGTCCACCGCCGAGGAGC
GGGCGTCAGCGGCGGTTTCTCCCTCCTGGCGAGTGACATCATCAAACATG
CCTTTCCACCCACCGGCGCCGTTGTGGTCACTGGCCGGTAGCGGCATCCC
GGCTCGAAATTCTCGTCCGCCGCCGCCACCGCCACCACCGCCGCCGCCGC
CGCCACCGCCGTTATCGCCAACAAGGTCGCCCGAACCGAATCCGAGGTTG
TTCCACGCCGCTGCCGCCGCTTGCATTTCTGAGGCTTTGTCCGATCTGCC
AGGGCGGCCGTTGCTGCTGCTGCTGCTGCTGCCGTTGGGCTCGTGCGGCC
GCTGGTACACCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCCAGACTTGG
CTCGGGGCCTTGAGGTCCCAAGCCAAGCCCCCTCCTTCTGCTCCCTCCCG
GTCATCGAAGTCGCCGCCGCCGCCGCCGCTGCTGCCGCTGCTGCGTCTTC
CCACTGGCTCGTACATCGGTGGAAGGGGGGAAGGGTAG
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