mRNA_Ecto-sp9_F_contig1139.1189.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1139.1189.1
Unique NamemRNA_Ecto-sp9_F_contig1139.1189.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1139.1189.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.030e-52
Identity = 90/94 (95.74%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 WIIGNYDSETSNDMPAVDGLGSVGLSITGSTNITCYDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT 282
            WIIGNYDSETSND P V GLGSVGLSITGSTNITC DASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT
Sbjct:  746 WIIGNYDSETSNDTPTVHGLGSVGLSITGSTNITCIDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT 839
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BLAST of mRNA_Ecto-sp9_F_contig1139.1189.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.940e-48
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 WIIGNYDSETSNDMPAVDGLGSVGLSITGSTNITCYDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT 282
            WI G+YDSETSND PAVDGLGSVGLSITGSTNITC  ASVYSSDGDALVVRDS+M+NID+GPYD++Y PWTIGQSRGTGIVVDSSDSVW+RRYT
Sbjct:  931 WIYGHYDSETSNDTPAVDGLGSVGLSITGSTNITCRYASVYSSDGDALVVRDSEMVNIDAGPYDEEYRPWTIGQSRGTGIVVDSSDSVWIRRYT 1024
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BLAST of mRNA_Ecto-sp9_F_contig1139.1189.1 vs.
Match: F5/8 (type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.170e-32
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 WIIGNYDSETSNDMPAVDGLGSVGLSITGSTNITCYDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT 282
            WI G+YD +TSND PAV GLGS GLS+ GSTNIT  DA +   DGDALVVRDS MI+ID+G Y++ Y PW++  SRGTG++VDS DS++VRR+T
Sbjct:  941 WIRGHYDPDTSNDTPAVPGLGSTGLSVVGSTNITLRDAEIRFLDGDALVVRDSNMISIDAGEYEELYSPWSLASSRGTGLIVDSCDSIYVRRHT 1034
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BLAST of mRNA_Ecto-sp9_F_contig1139.1189.1 vs.
Match: F5/8 (type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.160e-29
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    1 WIIGNYDSETSNDMPAVDGLGSVGLSITGSTNITCYDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT 282
            WI GNYD ET   + AV GLGS  LS+  S NITC    +    GDALVVRDS ++NID+G YD++YLPWTIG S GTG++VD+SDS+WVRR T
Sbjct:  949 WIQGNYDPETDG-ISAVSGLGSACLSVVNSQNITCEGVDIRYCSGDALVVRDSTLVNIDAGRYDEEYLPWTIGLSGGTGLIVDTSDSIWVRRTT 1041
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BLAST of mRNA_Ecto-sp9_F_contig1139.1189.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.900e-16
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 WIIGNYDSETSNDMPAVDGLGSVGLSITGSTNITCYDASVYSSDGDALVVRDSQMINIDSGPYDD 195
            WI G YD +TSND PAV GLGS G+SI  S NITC D  V   DGDA+VVR S ++NID+G YD+
Sbjct:  778 WIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWVDFCDGDAMVVRSSSVVNIDAGYYDE 842
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1139.1189.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.030e-5295.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.940e-4887.23protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1... [more]
F5/81.170e-3263.83type C domain-containing protein n=3 Tax=Ectocarpu... [more]
F5/85.160e-2960.64type C domain-containing protein n=2 Tax=Ectocarpu... [more]
Uncharacterized8.900e-1661.54protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1139contigEcto-sp9_F_contig1139:13984..15389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size284
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1139.1189.1prot_Ecto-sp9_F_contig1139.1189.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1139 13984..15389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928386.888375-CDS-Ecto-sp9_F_contig1139:13983..140761622928386.888375-CDS-Ecto-sp9_F_contig1139:13983..14076Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 13984..14076 +
1692277854.3979325-CDS-Ecto-sp9_F_contig1139:13983..140761692277854.3979325-CDS-Ecto-sp9_F_contig1139:13983..14076Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 13984..14076 +
1622928386.9034305-CDS-Ecto-sp9_F_contig1139:14485..145861622928386.9034305-CDS-Ecto-sp9_F_contig1139:14485..14586Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 14486..14586 +
1692277854.4082997-CDS-Ecto-sp9_F_contig1139:14485..145861692277854.4082997-CDS-Ecto-sp9_F_contig1139:14485..14586Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 14486..14586 +
1622928386.9184134-CDS-Ecto-sp9_F_contig1139:15301..153891622928386.9184134-CDS-Ecto-sp9_F_contig1139:15301..15389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 15302..15389 +
1692277854.4186213-CDS-Ecto-sp9_F_contig1139:15301..153891692277854.4186213-CDS-Ecto-sp9_F_contig1139:15301..15389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1139 15302..15389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1139.1189.1

>prot_Ecto-sp9_F_contig1139.1189.1 ID=prot_Ecto-sp9_F_contig1139.1189.1|Name=mRNA_Ecto-sp9_F_contig1139.1189.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=94bp
WIIGNYDSETSNDMPAVDGLGSVGLSITGSTNITCYDASVYSSDGDALVV
RDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYT
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mRNA from alignment at Ecto-sp9_F_contig1139:13984..15389+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1139.1189.1 ID=mRNA_Ecto-sp9_F_contig1139.1189.1|Name=mRNA_Ecto-sp9_F_contig1139.1189.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1406bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1139:13984..15389+ (Ectocarpus species9 EcSCA_722f female)
TGGATTATCGGCAACTACGACAGCGAGACTAGCAACGACATGCCCGCCGT
GGATGGCCTGGGGTCTGTCGGCCTCTCCATCACGGGCTCCACGGTGAGCC
CAGCGGGACCTGGCAGATGATGGGATGAGAACAAGCATTCGTTGCTTGAC
ACGCCGAACCACTGTGTGTGAATGATATTGCGGATGCATGTCACTTGCCA
TTTGATCTGGCGCGCATGCCCTCGCCCTTGGGGGAGGTCGAGTGTGTCAC
GCTTAAACTCGTCCTGTGCCCGCCTCGGATCACGTTCAGGGACGCAGACG
AACACATCATGCCGCCAGAGGAAGATTGTTTGATCTCTCTGCTAGCGACG
CCTTACCTACCTTGCATGTCCAGATTTGACGTGTTGCCATCGTTGTTTGT
ATTCACCAAGCGAAGACGGATCATTCGTTCCAGAACACCCGCATCGGCTT
CATTCTCTGTACTTCGTTTTCACCGCTGGAACCCGTCATCTTACGTTTCC
AGAACATCACTTGCTATGACGCCAGCGTTTACTCCAGCGACGGTGACGCC
CTCGTCGTGCGCGACTCCCAAATGATCAACATCGATTCTGGGCCCTACGA
TGAGTGAGTGAATGACAAGCAATGTTTTCGCTTCGTGTTCCAGTGGACAT
GATGCTAGCTTCATCATTTGACGGCACACAAAACGTTCGTACGCGTACGA
CATGGCGCTGACTTCATCATTTGATGGCACACATTACGTTTGTACATGTA
CGGTGCCGGCCCAATGGCGACAAACACACTCACAAGAAACCCAGGCTCTG
AGGTTTGAAACCATTGAGGAACCTGGCACTACATGTAGATCAGAGTTATA
TCATTTGTCCAATGCTCACTCGTTGACACACTGCAAAACTTTGAGTCTTG
CTGAAAATAGTGATGTCGATGGAGTGGACTGGTAAAGTATCGAATCTTCA
GGTTGTTTGCGGATGCTATGATGGACGTTGAATTCAACTATACGCGTGTC
GCTCGTTCTCGGTACGGCGATATTTTTGTGTTTGTGCCGCCGCACGCAAA
TATTGATCACCAGCCTGGAGAACCGTCGCTGGATCTTTGCGGTCTCCGGA
CCCTGCAGCGGTTTGCCATGAAGGCGTCCTCCTCCTCCTCAAGGCAATGG
TGGTAGTGATTTCCTATCCTTAGTCCGTCGCAGCATGCCATATCACACTG
CTTTTCAACTCTCGGCCATGGTTTGGTCCGTCTGCTCGTTTTGGTTAGTG
CCATTTCCCCGTTTGCTGCTTGCTGCGCGGCGTTTCTCGTACGCAAACGT
GCCTTACCCCAATTTCAGCGATTACCTACCTTGGACTATCGGCCAAAGTC
GTGGCACTGGGATTGTGGTCGACTCGTCGGACTCTGTGTGGGTTCGCCGC
TACACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1139:13984..15389+

>mRNA_Ecto-sp9_F_contig1139.1189.1 ID=mRNA_Ecto-sp9_F_contig1139.1189.1|Name=mRNA_Ecto-sp9_F_contig1139.1189.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1139:13984..15389+ (Ectocarpus species9 EcSCA_722f female)
TGGATTATCGGCAACTACGACAGCGAGACTAGCAACGACATGCCCGCCGT
GGATGGCCTGGGGTCTGTCGGCCTCTCCATCACGGGCTCCACGTGGATTA
TCGGCAACTACGACAGCGAGACTAGCAACGACATGCCCGCCGTGGATGGC
CTGGGGTCTGTCGGCCTCTCCATCACGGGCTCCACGAACATCACTTGCTA
TGACGCCAGCGTTTACTCCAGCGACGGTGACGCCCTCGTCGTGCGCGACT
CCCAAATGATCAACATCGATTCTGGGCCCTACGATGAAACATCACTTGCT
ATGACGCCAGCGTTTACTCCAGCGACGGTGACGCCCTCGTCGTGCGCGAC
TCCCAAATGATCAACATCGATTCTGGGCCCTACGATGACGATTACCTACC
TTGGACTATCGGCCAAAGTCGTGGCACTGGGATTGTGGTCGACTCGTCGG
ACTCTGTGTGGGTTCGCCGCTACACCCGATTACCTACCTTGGACTATCGG
CCAAAGTCGTGGCACTGGGATTGTGGTCGACTCGTCGGACTCTGTGTGGG
TTCGCCGCTACACC
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