mRNA_Ecto-sp9_F_contig11363.1170.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11363.1170.1
Unique NamemRNA_Ecto-sp9_F_contig11363.1170.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: AAA (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB87_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.200e-13
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   37 RTELHAATEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            RT LHA  EALLEVARLAEGLSGRALRKLPFQAHAFYVQ
Sbjct:  450 RTGLHAGAEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 488
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8Q2_HETAK)

HSP 1 Score: 52.0 bits (123), Expect = 8.480e-7
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:   67 LLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            LL+ A LAEGLSGRALRKLPFQAHAF++Q
Sbjct:  101 LLQTAELAEGLSGRALRKLPFQAHAFFIQ 129
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCL2_GLOUD)

HSP 1 Score: 51.2 bits (121), Expect = 4.120e-6
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   28 SSGRTELHAATEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            S G  EL  +T  LL VA + EG SGRALRKLPFQAHAF++Q
Sbjct:  304 SEGDDELELST-GLLRVAEMTEGFSGRALRKLPFQAHAFFIQ 344
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: ATPase_AAA_core (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVC2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.670e-6
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   55 ATEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            A+ ALL VA +A+G SGRALRKLPFQAHAF+VQ
Sbjct:  315 ASAALLLVAEMADGFSGRALRKLPFQAHAFFVQ 347
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: AAA (domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2FTB2_PHYPR)

HSP 1 Score: 50.8 bits (120), Expect = 5.690e-6
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   31 SGRTELHAATEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            +G  +L  + E LL+ A +AEG SGRALRKLPFQAHAF+VQ
Sbjct:  370 NGNEDLELSLE-LLQAAEMAEGFSGRALRKLPFQAHAFFVQ 409
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: Cysteine (synthase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKY2_PHYNI)

HSP 1 Score: 50.8 bits (120), Expect = 5.740e-6
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   31 SGRTELHAATEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            +G  +L  + E LL+ A +AEG SGRALRKLPFQAHAF+VQ
Sbjct:  979 NGNEDLELSLE-LLQAAEMAEGFSGRALRKLPFQAHAFFVQ 1018
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.790e-6
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   67 LLEVARLAEGLSGRALRKLPFQAHAFYV 150
            LL+VA LA+GLSGRALRKLPFQAHAF+V
Sbjct:  400 LLQVAALAQGLSGRALRKLPFQAHAFFV 427
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BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGA6_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.060e-5
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   67 LLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            LL+ A +AEG SGRALRKLPFQAHAF+VQ
Sbjct:  378 LLQAAEMAEGFSGRALRKLPFQAHAFFVQ 406
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7WS89_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.080e-5
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   67 LLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            LL+ A +AEG SGRALRKLPFQAHAF+VQ
Sbjct: 1463 LLQAAEMAEGFSGRALRKLPFQAHAFFVQ 1491
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CN28_PYTOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.460e-5
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   58 TEALLEVARLAEGLSGRALRKLPFQAHAFYVQ 153
            + ALL VA  AEG SGR+LRKLPFQAHAF+VQ
Sbjct:  387 SSALLRVAESAEGFSGRSLRKLPFQAHAFFVQ 418
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11363.1170.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
AAA9.200e-1392.31domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical8.480e-782.76protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
AAA4.120e-664.29domain-containing protein n=1 Tax=Globisporangium ... [more]
ATPase_AAA_core5.670e-675.76domain-containing protein n=1 Tax=Pythium brassicu... [more]
AAA5.690e-663.41domain-containing protein n=9 Tax=Phytophthora Tax... [more]
Cysteine5.740e-663.41synthase n=1 Tax=Phytophthora nicotianae TaxID=479... [more]
P-loop7.790e-685.71containing nucleoside triphosphate hydrolase prote... [more]
AAA1.060e-579.31domain-containing protein n=1 Tax=Peronospora effu... [more]
Uncharacterized1.080e-579.31protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]
Uncharacterized1.460e-575.00protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11363contigEcto-sp9_F_contig11363:3138..3290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D7FYR6
Preferred nameTRIP13
KEGG rclassRC00376,RC00563
KEGG koko:K00413,ko:K01810,ko:K22399
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00190,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00010,map00030,map00190,map00500,map00520,map01100,map01110,map01120,map01130,map01200,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00001,M00004,M00114,M00151,M00152
GOsGO:0000003,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030554,GO:0031323,GO:0031326,GO:0031577,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035825,GO:0036094,GO:0040020,GO:0042138,GO:0042802,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048515,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070192,GO:0070193,GO:0071173,GO:0071174,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0097659,GO:0098813,GO:0140013,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903506,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001141,GO:2001251
EggNOG free text desc.homologous recombination
EggNOG OGsCOG0464@1,KOG0744@2759
EC5.3.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928383.2593687-CDS-Ecto-sp9_F_contig11363:3137..32901622928383.2593687-CDS-Ecto-sp9_F_contig11363:3137..3290Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11363 3138..3290 +
1692277853.6248994-CDS-Ecto-sp9_F_contig11363:3137..32901692277853.6248994-CDS-Ecto-sp9_F_contig11363:3137..3290Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11363 3138..3290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11363.1170.1prot_Ecto-sp9_F_contig11363.1170.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11363 3138..3290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11363.1170.1

>prot_Ecto-sp9_F_contig11363.1170.1 ID=prot_Ecto-sp9_F_contig11363.1170.1|Name=mRNA_Ecto-sp9_F_contig11363.1170.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=51bp
MSSVVLHHLSSGRTELHAATEALLEVARLAEGLSGRALRKLPFQAHAFYV
Q
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mRNA from alignment at Ecto-sp9_F_contig11363:3138..3290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11363.1170.1 ID=mRNA_Ecto-sp9_F_contig11363.1170.1|Name=mRNA_Ecto-sp9_F_contig11363.1170.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11363:3138..3290+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTTCGGTTGTTTTGCACCACCTTTCCTCTGGCAGAACTGAACTACA
TGCAGCCACAGAGGCCCTTTTAGAGGTGGCTCGCCTGGCGGAGGGGCTCA
GCGGACGAGCGCTGCGGAAGCTGCCGTTTCAGGCACACGCCTTCTACGTG
CAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11363:3138..3290+

>mRNA_Ecto-sp9_F_contig11363.1170.1 ID=mRNA_Ecto-sp9_F_contig11363.1170.1|Name=mRNA_Ecto-sp9_F_contig11363.1170.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11363:3138..3290+ (Ectocarpus species9 EcSCA_722f female)
ATGTCTTCGGTTGTTTTGCACCACCTTTCCTCTGGCAGAACTGAACTACA
TGCAGCCACAGAGGCCCTTTTAGAGGTGGCTCGCCTGGCGGAGGGGCTCA
GCGGACGAGCGCTGCGGAAGCTGCCGTTTCAGGCACACGCCTTCTACGTG
CAAATGTCTTCGGTTGTTTTGCACCACCTTTCCTCTGGCAGAACTGAACT
ACATGCAGCCACAGAGGCCCTTTTAGAGGTGGCTCGCCTGGCGGAGGGGC
TCAGCGGACGAGCGCTGCGGAAGCTGCCGTTTCAGGCACACGCCTTCTAC
GTGCAA
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