mRNA_Ecto-sp9_F_contig11358.1163.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11358.1163.1
Unique NamemRNA_Ecto-sp9_F_contig11358.1163.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11358.1163.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 5.050e-56
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 MLLQVLKLGGDRGAIQGMCTFLEGRVKKWRGRRLVVTLTAEIIDKARKRFFSSGSAGEFHFCSFFVASLSEEIGEDLWLDGFQLTARVDPDDRDSAQAKLETMVTRFR 324
            MLLQVLKLGGDRGAIQGMCTFLEGRVK+WRG+RLVVTLTAEIIDKARKRFFSSGSAG FHF SFFVASLSEEIGE LWLDGFQLTARVDPDDRDSAQAKLETMV + R
Sbjct: 1370 MLLQVLKLGGDRGAIQGMCTFLEGRVKEWRGQRLVVTLTAEIIDKARKRFFSSGSAGGFHFSSFFVASLSEEIGEHLWLDGFQLTARVDPDDRDSAQAKLETMVAQPR 1477
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BLAST of mRNA_Ecto-sp9_F_contig11358.1163.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.320e-54
Identity = 100/116 (86.21%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 MLLQVLKLGGDRGAIQGM-------------CTFLEGRVKKWRGRRLVVTLTAEIIDKARKRFFSSGSAGEFHFCSFFVASLSEEIGEDLWLDGFQLTARVDPDDRDSAQAKLETM 309
            MLLQVLKLGGDRGAIQGM             CTFLEGRVK+WRGRRLVVTLTAEIIDKARK FFSSGSAGEFHFCSFFVASLSEEIGEDLWLDGFQLTAR DPDDRDSAQAKLETM
Sbjct: 1496 MLLQVLKLGGDRGAIQGMSAYLNLKGLNEIRCTFLEGRVKEWRGRRLVVTLTAEIIDKARKCFFSSGSAGEFHFCSFFVASLSEEIGEDLWLDGFQLTARADPDDRDSAQAKLETM 1611
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11358.1163.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.050e-5692.59protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.320e-5486.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11358contigEcto-sp9_F_contig11358:1711..3157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size343
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11358.1163.1prot_Ecto-sp9_F_contig11358.1163.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11358 1711..3157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928382.2493594-CDS-Ecto-sp9_F_contig11358:1710..17431622928382.2493594-CDS-Ecto-sp9_F_contig11358:1710..1743Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11358 1711..1743 -
1692277853.2888577-CDS-Ecto-sp9_F_contig11358:1710..17431692277853.2888577-CDS-Ecto-sp9_F_contig11358:1710..1743Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11358 1711..1743 -
1622928382.2716744-CDS-Ecto-sp9_F_contig11358:2185..24401622928382.2716744-CDS-Ecto-sp9_F_contig11358:2185..2440Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11358 2186..2440 -
1692277853.296869-CDS-Ecto-sp9_F_contig11358:2185..24401692277853.296869-CDS-Ecto-sp9_F_contig11358:2185..2440Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11358 2186..2440 -
1622928382.288859-CDS-Ecto-sp9_F_contig11358:3103..31571622928382.288859-CDS-Ecto-sp9_F_contig11358:3103..3157Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11358 3104..3157 -
1692277853.305466-CDS-Ecto-sp9_F_contig11358:3103..31571692277853.305466-CDS-Ecto-sp9_F_contig11358:3103..3157Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11358 3104..3157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11358.1163.1

>prot_Ecto-sp9_F_contig11358.1163.1 ID=prot_Ecto-sp9_F_contig11358.1163.1|Name=mRNA_Ecto-sp9_F_contig11358.1163.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=114bp
MLLQVLKLGGDRGAIQGMCTFLEGRVKKWRGRRLVVTLTAEIIDKARKRF
FSSGSAGEFHFCSFFVASLSEEIGEDLWLDGFQLTARVDPDDRDSAQAKL
ETMVTRFREAIGVG
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mRNA from alignment at Ecto-sp9_F_contig11358:1711..3157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11358.1163.1 ID=mRNA_Ecto-sp9_F_contig11358.1163.1|Name=mRNA_Ecto-sp9_F_contig11358.1163.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1447bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11358:1711..3157- (Ectocarpus species9 EcSCA_722f female)
ATGCTGCTGCAGGTGCTGAAGCTCGGTGGCGACCGTGGGGCGATCCAGGG
GATGGTGAGTAGTCTCGAGTGTTGGCCCGCTTCGTGTCCAAGCGTCCAAT
CCAGGCATTTTCCGTGCTCTCTACATGTATGCAGGTTGGGTGCTCATAGG
CGAGGACACACTTGCTGAACTGTTACGACGGGAGGTGTGTTGGTTCCCTT
TTGGTTGCGTAGTTTCACGTCCTCTTCCTTTTCGTTCGGTCGATGGAGGA
GGAAGTGGGTGCTGGGAGGCAATGGGTAGCTTCCAAGACGAGTGCCCATG
TCAACACAACAAGCAGCTTACAAGTGGTGGCCTTTCCTCTCTCTCGCCCT
CATGCACTAACGCCACGGGATAACGTCCTGTTGGGAGATTATTTAGTGGT
GTACGACTGGGGATGGCGGTGTACCTCATCCAAGCAGATTGATCGACGCC
TGGCTTGGGGTTTAGTCGGCATACCTTTACTCTTAAGGGACTGAATGAGA
TTCGGGTAAGCGGCACGCGGGACCGTGGAAAGGGGCAACTTGTTTGTAGC
AAGTACTTCACACTTTAGATACGGATCCGCCAAGCGTCGACGTGAATTTG
TACAGCCAGCCACCGAACGCTGACGGTTGTTCACAACGTAGTGATTTTGA
CTTTTCTCTCTGTTCTTCCCCACGCATCCCTTCACGTTTGTTGCTTTTGG
TGCCCTGGTATATTCAGTGCACCTTCCTCGAGGGCCGGGTGAAGAAGTGG
CGGGGGCGACGCTTGGTCGTTACCCTTACGGCCGAAATCATCGATAAGGC
CCGAAAGCGTTTCTTTTCAAGCGGAAGTGCTGGCGAGTTCCACTTCTGCA
GCTTTTTCGTGGCCTCGCTGTCGGAGGAGATCGGAGAGGACCTTTGGCTG
GACGGCTTCCAGCTGACGGCCCGAGTCGACCCCGATGACCGAGACAGCGC
CCAGGCCAAGCTAGAGACGATGGTAAGGCCGAGGCTTGTCGAGATGCCGG
AAGAAAGGCACAGATGACAAATCGGTGCTGATGTTTGAGCGCAATGCGAT
CGTGACCATGCCACGCCTAAGCATTCCTCAGGTAGCACAACCTCGCTGCG
ACCCGGTATGCGTGGCCACCCTCAATTTCTAATAATCTCACACAACGAAA
TATCGCCTCAATACATTCCGATGGGGTTTCATCGCCTAGGTTCCGAAGGA
CATGCCATTTGGCTTGTGGCTGGACCGGGATGCGGCTGCTTTTTTATCTT
GGAGCGAAACTCGTTGTAAGATAGACTATTCACCTCACAAAACTTAAACT
TTCCTCCCCCTCGCCGCTGTTTCCATGACCTCGGGACATGCTTGCGGACG
CGCGGACGTGGCGAAATCAACTCGTGTATTTTGGAACTTGTTGGAACTCT
GGGGGTTGTCTCAGGTGACACGGTTTAGGGAAGCAATCGGTGTAGGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11358:1711..3157-

>mRNA_Ecto-sp9_F_contig11358.1163.1 ID=mRNA_Ecto-sp9_F_contig11358.1163.1|Name=mRNA_Ecto-sp9_F_contig11358.1163.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11358:1711..3157- (Ectocarpus species9 EcSCA_722f female)
ATGCTGCTGCAGGTGCTGAAGCTCGGTGGCGACCGTGGGGCGATCCAGGG
GATGATGCTGCTGCAGGTGCTGAAGCTCGGTGGCGACCGTGGGGCGATCC
AGGGGATGTGCACCTTCCTCGAGGGCCGGGTGAAGAAGTGGCGGGGGCGA
CGCTTGGTCGTTACCCTTACGGCCGAAATCATCGATAAGGCCCGAAAGCG
TTTCTTTTCAAGCGGAAGTGCTGGCGAGTTCCACTTCTGCAGCTTTTTCG
TGGCCTCGCTGTCGGAGGAGATCGGAGAGGACCTTTGGCTGGACGGCTTC
CAGCTGACGGCCCGAGTCGACCCCGATGACCGAGACAGCGCCCAGGCCAA
GCTAGAGACGATGTGCACCTTCCTCGAGGGCCGGGTGAAGAAGTGGCGGG
GGCGACGCTTGGTCGTTACCCTTACGGCCGAAATCATCGATAAGGCCCGA
AAGCGTTTCTTTTCAAGCGGAAGTGCTGGCGAGTTCCACTTCTGCAGCTT
TTTCGTGGCCTCGCTGTCGGAGGAGATCGGAGAGGACCTTTGGCTGGACG
GCTTCCAGCTGACGGCCCGAGTCGACCCCGATGACCGAGACAGCGCCCAG
GCCAAGCTAGAGACGATGGTGACACGGTTTAGGGAAGCAATCGGTGTAGG
AGTGACACGGTTTAGGGAAGCAATCGGTGTAGGA
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