mRNA_Ecto-sp9_F_contig11345.1153.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11345.1153.1
Unique NamemRNA_Ecto-sp9_F_contig11345.1153.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11345.1153.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 4.000e-48
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:    1 MDNAVTLVGLAGWDVLWQMRGLALSRRPAVRLSSPAERTERDRQALKLTMGPRRGIVACNGRAGHVQFYNVGTNCLEASAEVVRFNRD 264
            MDNAVTLVGLAGWDVLWQMRGLALSR P +RL+SPAER ERDRQALKLTMGPRRGIVACNGRAGHVQFYNVGTNCLEASAEVVRFNRD
Sbjct:    1 MDNAVTLVGLAGWDVLWQMRGLALSRPPPMRLTSPAERAERDRQALKLTMGPRRGIVACNGRAGHVQFYNVGTNCLEASAEVVRFNRD 88
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BLAST of mRNA_Ecto-sp9_F_contig11345.1153.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.610e-47
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 MDNAVTLVGLAGWDVLWQMRGLALSRRPAVRLSSPAERTERDRQALKLTMGPRRGIVACNGRAGHVQFYNVGTNCLEASAEVVRFNRD 264
            MDNAVTLVGLAGWDVLWQMRGLALSR PA+RLSSPAER ERDRQALKLTMGP+RGIV CNGRAGHVQFYNVGTNCLEASAEVVR NRD
Sbjct:  498 MDNAVTLVGLAGWDVLWQMRGLALSRPPAIRLSSPAERAERDRQALKLTMGPKRGIVVCNGRAGHVQFYNVGTNCLEASAEVVRVNRD 585
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11345.1153.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.000e-4894.32protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.610e-4793.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11345contigEcto-sp9_F_contig11345:799..2032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11345.1153.1prot_Ecto-sp9_F_contig11345.1153.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11345 799..2032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928381.4607935-CDS-Ecto-sp9_F_contig11345:798..8611622928381.4607935-CDS-Ecto-sp9_F_contig11345:798..861Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11345 799..861 -
1692277852.9768503-CDS-Ecto-sp9_F_contig11345:798..8611692277852.9768503-CDS-Ecto-sp9_F_contig11345:798..861Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11345 799..861 -
1622928381.4732258-CDS-Ecto-sp9_F_contig11345:1479..16461622928381.4732258-CDS-Ecto-sp9_F_contig11345:1479..1646Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11345 1480..1646 -
1692277852.9930632-CDS-Ecto-sp9_F_contig11345:1479..16461692277852.9930632-CDS-Ecto-sp9_F_contig11345:1479..1646Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11345 1480..1646 -
1622928381.483715-CDS-Ecto-sp9_F_contig11345:1998..20321622928381.483715-CDS-Ecto-sp9_F_contig11345:1998..2032Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11345 1999..2032 -
1692277853.0026057-CDS-Ecto-sp9_F_contig11345:1998..20321692277853.0026057-CDS-Ecto-sp9_F_contig11345:1998..2032Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11345 1999..2032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11345.1153.1

>prot_Ecto-sp9_F_contig11345.1153.1 ID=prot_Ecto-sp9_F_contig11345.1153.1|Name=mRNA_Ecto-sp9_F_contig11345.1153.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
MDNAVTLVGLAGWDVLWQMRGLALSRRPAVRLSSPAERTERDRQALKLTM
GPRRGIVACNGRAGHVQFYNVGTNCLEASAEVVRFNRD
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mRNA from alignment at Ecto-sp9_F_contig11345:799..2032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11345.1153.1 ID=mRNA_Ecto-sp9_F_contig11345.1153.1|Name=mRNA_Ecto-sp9_F_contig11345.1153.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1234bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11345:799..2032- (Ectocarpus species9 EcSCA_722f female)
ATGGACAATGCGGTGACCCTCGTGGGATTGGCAGGTGAGGTGCTTTTCGA
ATGGCAACTTTAGTTTAATCATTTTTGCGAACTTGTCGGCACACGTTTCC
GGCATTATTGGCTTGTTTCCCGCGGTGTGTTTTCAATTGTGTCTTTTAAG
TCGTGGGAGGGAGTGTTTGGCAGGCTAACTTATTTCGTATCATGATTGTT
TAACAGTTACACTTCCACCAGCAATCGAGGGATGCACACGTACAGTCCAC
GCCGGTGCGCGTGTTAACCCACGCCGTGTGCGTGTGTTTTTCGGCCTTCA
CGAACGCCCTATTAACCCGTCTCTAAACCCCTCGACACCTGACCTTCTTG
TCTCTTTGTCTTGTAACCAATGCCGTCGCCTCGCAGGGTGGGATGTCCTG
TGGCAAATGCGGGGGCTGGCTCTCTCCCGCCGCCCCGCCGTGCGGCTAAG
CTCCCCGGCGGAGAGGACTGAGAGGGATCGGCAGGCCCTCAAGCTCACCA
TGGGGCCCAGGCGCGGGATCGTGGCGTGTAACGGGCGGGCGGGGCACGTC
CAGGTGGGGCTCGTCTTGTCTTGTCTGGTGTCGTTGTCGCACCGGTATCG
GTGTTATGGCACCCATCGGTGTTATGGCACCGGGGTGCGATAAAAAACCA
AGATAGGAATGATTTTAAAAAACGATCGCACCCCGGTGCCATAACACGCA
CGATCACGGTATATGTGTGTTTGTTGTTGTGTTGGCATCGTGGGCATCAT
GATGGCCTGTACATACAAGTGTGCGTTTTGTCTCCTCGTTAACCACCGCC
TCTGTACCCTCGGGTTCTCTCTGCTGTTAATACGAATTCAGTCTACATCG
TTGTCACCGACTTGCCCATGCGCGAGCAGCGCCTTTGTACTCTCGTGTCC
CACTACCTCTTTGTCTTCCGGTAATCTCTGCCGCTGCTGCGGCTACAGTG
ATGTAGTTCTAAACGTGGGCGCCAATTGGCTGGAGGCCAGCAGCGCTTTC
ACTCATGTCCCGCTGCCTCAACGTCGTCTATTGTTGGTCTCCACTGCTGC
TGTTGTCTAGTTCTACGACGTGGGCACCGATTGCCCGGAGGCCAATAGCG
CCTTTTCACTCATTACCCACCACCCTCCTCCCTCTGGTCTATTGGTCCCC
CGTGCGGCTGCCGTTGTCTAGTTCTACAACGTGGGCACCAACTGCCTCGA
GGCTAGCGCGGAGGTTGTGAGGTTCAACAGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11345:799..2032-

>mRNA_Ecto-sp9_F_contig11345.1153.1 ID=mRNA_Ecto-sp9_F_contig11345.1153.1|Name=mRNA_Ecto-sp9_F_contig11345.1153.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11345:799..2032- (Ectocarpus species9 EcSCA_722f female)
ATGGACAATGCGGTGACCCTCGTGGGATTGGCAGATGGACAATGCGGTGA
CCCTCGTGGGATTGGCAGGGTGGGATGTCCTGTGGCAAATGCGGGGGCTG
GCTCTCTCCCGCCGCCCCGCCGTGCGGCTAAGCTCCCCGGCGGAGAGGAC
TGAGAGGGATCGGCAGGCCCTCAAGCTCACCATGGGGCCCAGGCGCGGGA
TCGTGGCGTGTAACGGGCGGGCGGGGCACGTCCAGGGTGGGATGTCCTGT
GGCAAATGCGGGGGCTGGCTCTCTCCCGCCGCCCCGCCGTGCGGCTAAGC
TCCCCGGCGGAGAGGACTGAGAGGGATCGGCAGGCCCTCAAGCTCACCAT
GGGGCCCAGGCGCGGGATCGTGGCGTGTAACGGGCGGGCGGGGCACGTCC
AGTTCTACAACGTGGGCACCAACTGCCTCGAGGCTAGCGCGGAGGTTGTG
AGGTTCAACAGGGACTTCTACAACGTGGGCACCAACTGCCTCGAGGCTAG
CGCGGAGGTTGTGAGGTTCAACAGGGAC
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