mRNA_Ecto-sp9_F_contig1133.1144.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS9_9PHAE) HSP 1 Score: 503 bits (1296), Expect = 1.780e-172 Identity = 266/311 (85.53%), Postives = 270/311 (86.82%), Query Frame = 3
Query: 24 IPSTMRCVCRRPFRAINARWLLSVLIVVACQATSTLRSRGATPAAXXXXXXXXXXXXXXXXXXXXXXXX---LLSARCRTAFRSQPHRRGVPTRRGTHHRSRRYFPHRYTELLRMGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE 947
+PSTMR VCRRPFRAI ARWLLSVLIVVACQATSTLR+R ATPAA L S+RC T FRSQPHRRGV TR GTHHR RRYFPHRYTELLRMGA SGD Y+G PAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVE SMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE
Sbjct: 1 MPSTMRRVCRRPFRAITARWLLSVLIVVACQATSTLRNRCATPAATSTCSMQGACSSSAGATSTCRASRSAFLPSSRCGTKFRSQPHRRGVSTRPGTHHRIRRYFPHRYTELLRMGAGSGDERYQGAPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVELSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE 311
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN10_ECTSI) HSP 1 Score: 380 bits (977), Expect = 3.710e-126 Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = 3
Query: 357 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE 947
MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQ VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE
Sbjct: 1 MGARSGDGSYRGGPAGPRPKKRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQ--VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLEDAAE 195
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTH8_KLENI) HSP 1 Score: 116 bits (291), Expect = 1.130e-25 Identity = 67/178 (37.64%), Postives = 106/178 (59.55%), Query Frame = 3
Query: 420 RPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLDSTTR-----VPGQTLTGVEKRYRTQWISALDFVMQNLKFIDE---QEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQK 929
R L +CQ + A E+CVEN GRP A ++ DFV ++E G S++++ ++LQ V G LTG E+RYR+QW+ + +Q LK E Q+P + +E I A + V+ G++T +EQ+ VKFD+AL+T G +GG +E ++PQ +P++QLVLL ++ L +
Sbjct: 71 RSLDDVCQDIEKAFSEVCVENLGRPAAAALFDFVAATVEAYMLGASRDKVTIQLQYGSKEAYRIERDVAGYRLTGSEERYRSQWLDVIYTTLQLLKQGSEEWRQQPATQDESLI---AIIHRVLEGQRTGEEQSLVKFDRALSTAGASGGATSERRVVAPQWIPVTQLVLLTMKVLNE 245
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W5D4_MARPO) HSP 1 Score: 114 bits (286), Expect = 7.850e-25 Identity = 63/181 (34.81%), Postives = 105/181 (58.01%), Query Frame = 3
Query: 417 KRPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQLLD-----STTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSV-----EEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQK 929
K L +C+ + E+CVEN+GRP ++ +FV ++ +G+++++L L+L D S G LT E++YR+QW+ + +Q LK +D Q +S + H+ S V V+ G+Q+ DEQ+FVKFD+ LAT G +GG + A++PQ +PL+QLVLL ++ + +
Sbjct: 82 KPSLADICRCLQHCFFEICVENRGRPAGTALHEFVGAAVAAYLAGHTRDRLSLQLAYGDNGMEESKLETEGFRLTASEEQYRSQWLDTIYTTLQFLKVVDNQASRSSLVTAQTDSHLFS--IVRRVVEGQQSGDEQSFVKFDRGLATKGASGGAIAQREAVAPQFIPLTQLVLLTMKVVNE 260
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LBA0_CHABU) HSP 1 Score: 115 bits (287), Expect = 1.730e-24 Identity = 63/178 (35.39%), Postives = 104/178 (58.43%), Query Frame = 3
Query: 420 RPLVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQL----LDST-TRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQAS-VDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQKLE 935
R L LC+ + A E+CV+N GRP ++ DF + E G++++QL LEL+ +D + G LT E+RYR+QWI + + +K ++ +E + + + + V V+ G++T +EQT VKFD+ALAT G +GG A + I+PQ VP+SQ+VLL ++ + + +
Sbjct: 134 RSLPQLCRLVERAFFEVCVQNLGRPAGMALYDFTVATSEAFFKGFTRDQLALELRFGSHHMDGYGVQAAGYRLTSSEERYRSQWIDTIYVTLHMMKVVEPEEASNTPDMGDEWLRNIVHRVLEGQRTGEEQTAVKFDRALATAGASGGAAAQKKVIAPQWVPVSQIVLLTMKVVAEAQ 311
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F2M6_VITBC) HSP 1 Score: 99.4 bits (246), Expect = 6.520e-20 Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 3
Query: 441 QAMNDAILEMCVENKGRPLAKSMTDFVEFSMEG-LASGYSKEQLLLELQLLDST--TRVPGQTLTGVEKRYRTQWISALDFVMQNLKFID-----EQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLLGIRALQK 929
+++N E C+ N+GR LA+++ DFVE ++ + G S QL LE Q+ R P + LT +K R +WI + ++ L + E E S Q V ++G+QT D Q++V FD++LAT G GGVATE +A+ PQ++PLSQLVLL ++A+ +
Sbjct: 47 RSLNLYYREACLHNRGRSLAEALGDFVEECVDVFIYGGCSPVQLQLETQVEGEIHCERNPLERLTQDDKEARARWIRCVWLTLRTLGVVSVRRDSEVEGPSTSAADAALQGLVSTTVKGQQTGDRQSYVPFDRSLATRGNQGGVATENVAVPPQVIPLSQLVLLTMKAVNE 217
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Match: Uncharacterized (protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSW5_PHYPA) HSP 1 Score: 97.8 bits (242), Expect = 6.540e-19 Identity = 52/166 (31.33%), Postives = 95/166 (57.23%), Query Frame = 3
Query: 426 LVFLCQAMNDAILEMCVENKGRPLAKSMTDFVEFSMEGLASGYSKEQLLLELQ-----LLDSTTRVPGQTLTGVEKRYRTQWISALDFVMQNLKFIDEQEPKSVEEFHIKSQASVDVVMRGRQTNDEQTFVKFDKALATGGVAGGVATECIAISPQMVPLSQLVLL 908
L +C+ ++ E+CV+N GR +++ +FV +++ +GY+ ++L L++ + + G LT E+ YRTQW++ + +Q LK D + S +++ + + G++ +EQ+ VKFD+ LAT G +GG +E + ISPQ VP++Q+VLL
Sbjct: 100 LDDVCRRLHLCFFEICVQNLGRSAGQALHEFVCAAVDAFMAGYTFDRLNLQIVHGSGGMEEFKMENAGYRLTASEEYYRTQWLTTIYVTLQMLKVADNEASASFVTENLQLVQIIHRTLEGQRHGEEQSLVKFDRGLATKGASGGAVSEKLVISPQWVPVTQIVLL 265 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1133.1144.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1133.1144.1 >prot_Ecto-sp9_F_contig1133.1144.1 ID=prot_Ecto-sp9_F_contig1133.1144.1|Name=mRNA_Ecto-sp9_F_contig1133.1144.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=307bp MRCVCRRPFRAINARWLLSVLIVVACQATSTLRSRGATPAATSTCSARSSback to top mRNA from alignment at Ecto-sp9_F_contig1133:3831..7694+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1133.1144.1 ID=mRNA_Ecto-sp9_F_contig1133.1144.1|Name=mRNA_Ecto-sp9_F_contig1133.1144.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3864bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1133:3831..7694+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1133:3831..7694+ >mRNA_Ecto-sp9_F_contig1133.1144.1 ID=mRNA_Ecto-sp9_F_contig1133.1144.1|Name=mRNA_Ecto-sp9_F_contig1133.1144.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1842bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1133:3831..7694+ (Ectocarpus species9 EcSCA_722f female)back to top |