mRNA_Ecto-sp9_F_contig11328.1142.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11328.1142.1
Unique NamemRNA_Ecto-sp9_F_contig11328.1142.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11328.1142.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV3_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 4.110e-119
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 2 
Query:    2 PSLGHLVGLVRYYVHQMETVSKEEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVAHEGRGGFDGEAAGLARAERRSLHDELLELFDTRLDEHASLWENLSRGEGGRAPVSISPAFVAHVKGMIQGWLDQARVSKKERDATTPKSRAGKSGRRAAGGLWSPPRVGGSAMMRQASDMSVSKTPAIN 586
            PSLGHLVGLVRYYVHQMETVS EEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVAHEGR G DGEAAGLA AERRSLHDELLELFDTRLDEHASLWENLSRGEGGRAPVSISPAFVAHVKGMIQGWLDQAR SKKERDATTPKSRAGKSGRRAAGG+WSPPRVGGSAMMRQASDMSVSKTPAIN
Sbjct:  923 PSLGHLVGLVRYYVHQMETVSNEEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVAHEGRDGLDGEAAGLAPAERRSLHDELLELFDTRLDEHASLWENLSRGEGGRAPVSISPAFVAHVKGMIQGWLDQARASKKERDATTPKSRAGKSGRRAAGGVWSPPRVGGSAMMRQASDMSVSKTPAIN 1117
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BLAST of mRNA_Ecto-sp9_F_contig11328.1142.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 3.040e-116
Identity = 187/197 (94.92%), Postives = 191/197 (96.95%), Query Frame = 2 
Query:    2 PSLGHLVGLVRYYVHQMETVSKEEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVAHEGRGGFDGEAAGLARAERRSLHDELLELFDTRLDEHASLWENLSRGEGGRAPVSISPAFVAHVKGMIQGWLDQARVSKKERDATTPKSRAGKSGRRAAGGLWSPPRVGGSAMMRQASDMSVSKTPAIN*W 592
            PSLGHLVGLVRY+VHQMETVSKEEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVAHEGRGG DG AAGLA+AERRSLHDELLELFDTRLDEHASLWENLSRGEGGRAPVSISPAFVAHVKGMIQGWLDQAR SKKERD TTPKSRAGKSG RAAGGLWSPPRVGG+AMMRQASDMSVS+TPAIN W
Sbjct: 1332 PSLGHLVGLVRYFVHQMETVSKEEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVAHEGRGGLDGVAAGLAQAERRSLHDELLELFDTRLDEHASLWENLSRGEGGRAPVSISPAFVAHVKGMIQGWLDQARASKKERDTTTPKSRAGKSGWRAAGGLWSPPRVGGAAMMRQASDMSVSRTPAINRW 1528
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11328.1142.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.110e-11996.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.040e-11694.92protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11328contigEcto-sp9_F_contig11328:721..3937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size743
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11328.1142.1prot_Ecto-sp9_F_contig11328.1142.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11328 770..3783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928379.511316-UTR-Ecto-sp9_F_contig11328:720..7691622928379.511316-UTR-Ecto-sp9_F_contig11328:720..769Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11328 721..769 +
1692277852.2803388-UTR-Ecto-sp9_F_contig11328:720..7691692277852.2803388-UTR-Ecto-sp9_F_contig11328:720..769Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11328 721..769 +
1622928379.7095435-UTR-Ecto-sp9_F_contig11328:3783..39371622928379.7095435-UTR-Ecto-sp9_F_contig11328:3783..3937Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11328 3784..3937 +
1692277852.323502-UTR-Ecto-sp9_F_contig11328:3783..39371692277852.323502-UTR-Ecto-sp9_F_contig11328:3783..3937Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11328 3784..3937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928379.5339653-CDS-Ecto-sp9_F_contig11328:769..7931622928379.5339653-CDS-Ecto-sp9_F_contig11328:769..793Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 770..793 +
1692277852.2877676-CDS-Ecto-sp9_F_contig11328:769..7931692277852.2877676-CDS-Ecto-sp9_F_contig11328:769..793Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 770..793 +
1622928379.5487165-CDS-Ecto-sp9_F_contig11328:1979..22371622928379.5487165-CDS-Ecto-sp9_F_contig11328:1979..2237Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 1980..2237 +
1692277852.2956023-CDS-Ecto-sp9_F_contig11328:1979..22371692277852.2956023-CDS-Ecto-sp9_F_contig11328:1979..2237Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 1980..2237 +
1622928379.5618918-CDS-Ecto-sp9_F_contig11328:2669..28851622928379.5618918-CDS-Ecto-sp9_F_contig11328:2669..2885Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 2670..2885 +
1692277852.305008-CDS-Ecto-sp9_F_contig11328:2669..28851692277852.305008-CDS-Ecto-sp9_F_contig11328:2669..2885Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 2670..2885 +
1622928379.6937578-CDS-Ecto-sp9_F_contig11328:3741..37831622928379.6937578-CDS-Ecto-sp9_F_contig11328:3741..3783Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 3742..3783 +
1692277852.3140662-CDS-Ecto-sp9_F_contig11328:3741..37831692277852.3140662-CDS-Ecto-sp9_F_contig11328:3741..3783Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11328 3742..3783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11328.1142.1

>prot_Ecto-sp9_F_contig11328.1142.1 ID=prot_Ecto-sp9_F_contig11328.1142.1|Name=mRNA_Ecto-sp9_F_contig11328.1142.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=180bp
METVSKEEDSAVGAGDIVSNDERNVRRWRLGQLGFITETALWMLVVNAVA
HEGRGGFDGEAAGLARAERRSLHDELLELFDTRLDEHASLWENLSRGEGG
RAPVSISPAFVAHVKGMIQGWLDQARVSKKERDATTPKSRAGKSGRRAAG
GLWSPPRVGGSAMMRQASDMSVSKTPAIN*
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mRNA from alignment at Ecto-sp9_F_contig11328:721..3937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11328.1142.1 ID=mRNA_Ecto-sp9_F_contig11328.1142.1|Name=mRNA_Ecto-sp9_F_contig11328.1142.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3217bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11328:721..3937+ (Ectocarpus species9 EcSCA_722f female)
GCCGAGCTTGGGTCACCTGGTGGGCCTGGTGCGGTACTACGTGCACCAGA
TGGAGACTGTATCCAAGGAAGAGGTTAGTGTACGTCCGGTATCGAAGGGG
TGCCTTTCGAACCTCCGCTGCAGATCCTGACTATTTTCAATATTACCTCT
TAGCACTACTATACGCAGCAGCAGTGTGAGGTTGCCTTTTACAAGGGACA
CATCTCCCCAACGTCTGTCGTTCGGGGGCTATTGATACATTCCTGGGGAG
GTTGTACCCTATTTTGTATGAACGGGATCTCCACAACAGGGGTACACTAC
ACTAAATGTTTGCGTTCGTGGGGATCCGAGACGGGGCTGAGGCTAGCGGC
GGCAATGGGGCGTGTCTAGCGTTGACCAACATCAATCCCAGATGTGTACA
TCCCTAGGGCTCAACCGTGACAAGCGTGCCGCTGGCGGCCCGCGGACATG
CGATTGGGCGACGAAAGACCAACGTAACTCCCGCCTGGGTGACAGGCTTT
GACAAGGAACGAGAGCATACGAGTCAGGTAGTCAGTCTCGATGCCACCCC
GTGGTGGACATGCGAGATGGACGGGATATCTCACGGCAATTTACGGAACC
TTGGAGTAGAGAGAACGAAACAGCCTTGTTGTTTTTGACAGGCAGGCATC
CCCAATCCACACCCTCGTCCTCGACACCCACTTCTTCCTTTCCATGCGAA
GACACGACACGTTCGCTTGATCCCCGACGTTGTTGCAAGCCCACAATTAC
CCCGGCCCCTCCAAGGACCTGCTTCCTCGATGTTACCGTTGACCCTACCT
ATAATGCAGATGTTAACTAGGCACAAGACAAGCTGTGAGCGCTGATATGA
AGTGAAGACAAAACAAAAAAAATCGAGCCCTAGCTCGAGCCTCACGGTCT
CAGAAACAAAGAACGTGGTGAATCTGTACGCACACCGCGTTGAACAGCAA
AACAATGCTACTGTACCCTTCATCAACCGCTTCCTCGGAATACGTGTTGG
CTCCACACTGCTTTTTTTTGCGTGTGCTTCGTTGTTTTTGTCTCGGATAC
CCTGTACTTGTAGACCCGAACCCAACCTCAATTACCTAGACCCCCAAACC
CGCATCGAACCCTAGTCTTGTATCCCGAACCCCACCTTAATTCACCCAAA
CACCCAAACCCGCATCTATAACCTTCACCTTGTGCCCCGAACCCCGCCTT
TGTTAACCCCAAACCCCCACCTTACCCTAACGTTGTACCCCGCGACACCA
CCACCGAAGGACTCGGCTGTCGGAGCCGGCGACATCGTCTCCAACGACGA
GCGCAACGTTAGGAGGTGGCGCCTGGGCCAGCTAGGGTTCATCACGGAGA
CCGCCCTGTGGATGCTGGTGGTCAACGCCGTGGCTCACGAAGGAAGAGGC
GGCTTTGACGGGGAGGCGGCGGGGCTGGCCCGGGCGGAGAGGAGGTCGCT
GCACGACGAGCTGTTGGAGCTATTTGACACGAGGCTTGACGAGCACGCCT
CTCTTTGGGAGAACCTGGTGCGTGCGTGTCGTACGTGCCACGTATTTTTC
GTGTGTGTGTTTGAGTTGAAGACAGCCACGTCGTGCGGAAGACGGAATCT
ACAGTACAGTAGTGGAGGCGAGCGGCTCAACCTTTTCCCTTTTTTTATCT
GGGTCTGTATTATAGTACAAGGAGCGGTGCAGAACGTAAGAGATTTCTCG
TTGCATGACGGCAGGGCAGTGTTCACAGCAACCCAACCCAAGTACTATTA
CAAAAAACCTCTACGTACTTTAATCTGGTTGCACACCTGATTAAACATTT
CAGAAGAATGGGCTGTTCGAAAGAAGGCCCGTGTGACACAATTTCCGCCC
AAAATGAGGGTCGGGTGCAGGGCTAACAGTACAATTCTAACGGCCCAGCC
TTTATCCCACCCCTGGACGTTACCGTTTTGGGTTCTTTGGTCGCCGCAGA
GCCGCGGAGAGGGCGGGCGAGCCCCCGTGTCCATCAGCCCCGCCTTCGTA
GCACACGTCAAGGGCATGATACAGGGCTGGCTGGACCAAGCCAGAGTTAG
CAAGAAGGAGAGGGATGCCACTACCCCCAAGTCTCGGGCCGGCAAGTCTG
GGCGGAGGGCGGCCGGTGGCCTTTGGAGCCCCCCCCGGGTCGGCGGGTCG
GCGATGATGCGCCAGGTGTGTATTTGTTTGGTAATTTTTTTTCGTGCAGA
TGTGGGGTCTCTCGTCTCTCGTCTCTCGTCTCTCGTCTCTCGTCTCTCGA
TCGACGGCTGCGCTCGCCGGCTGATTGACGGACAGGCGTCAGTCTTGACA
CGAGAGAAAAAACGTGACCGTAAGAGAGAGAGAGGCAGCGACAATGACAG
ACAAGACTGACCGACTGGCTGACAGACATATTTTATTTGGCCCCTTAAGC
GGCGGGTTCGTCGTTATGATCGTCGCGCAAATTCAACAATCGAAAGAACC
ACGCACCGCGGTGACAGCTGCATGCATCTCTCTATGCCACGATGAACACA
GCCGCGATAAATGTGCATGCCCGTTTTGTGAAGAAACGTCTCTATAGTCC
AGTTGTCCCTTGGTTCTGTTTCCATATACTGTAAAAGACAGTAGACACTT
AGCAGCTAGCTCCGAGATGAAGCATGTCGGACCTGGACGGACTGCAGAGT
ATCCCCACGTTGCCGATGGACGCGCGTGGTCAACAGCCCCACGCCATAAA
ATGTCACACGGCTTGTTCCATCGGACCCCCCCAGGTTCGCAGTACTGATA
CGAGAGGCGCCGATGTGTGGGGCTTGCTCGATTTATCATCCAAAGAACAG
AAAAACGAGCGCTGGTGCTTGTATTGTGTTGTAGCCCGCCAAGTAGAGGG
TTAATGTGGCGTCGCTCTCTCTGAGAAGTATCTTCATTTGTGGCGTTGGC
AAGGATGAAATGATCAACATATACACCAGTGTCTTGACCGATGCTTCGTT
GCCTCTCATGGGCCCGATCGCTGCTGTGTGTTCACATGTTGTCACGTCGG
ATTTTTGTTCGATTTCCGCAGGCCAGCGACATGAGCGTCTCGAAAACGCC
TGCCATCAACTGATGGTAATCTTCCGCCAACCTGACGGTAATCTAAATGC
CCACGGTTTGGACGGACAAGCAGCAGCGGCTGGGGTGGGCTTAACAGCAG
GCCATGGCGTGCGTTTCCTCCAACGAGCCGCCTGCCTTTTTGTTATTATT
GTCAAGGGTATTGTAGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11328:721..3937+

>mRNA_Ecto-sp9_F_contig11328.1142.1 ID=mRNA_Ecto-sp9_F_contig11328.1142.1|Name=mRNA_Ecto-sp9_F_contig11328.1142.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11328:721..3937+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGACTGTATCCAAGGAAGAGATGGAGACTGTATCCAAGGAAGAGGA
CTCGGCTGTCGGAGCCGGCGACATCGTCTCCAACGACGAGCGCAACGTTA
GGAGGTGGCGCCTGGGCCAGCTAGGGTTCATCACGGAGACCGCCCTGTGG
ATGCTGGTGGTCAACGCCGTGGCTCACGAAGGAAGAGGCGGCTTTGACGG
GGAGGCGGCGGGGCTGGCCCGGGCGGAGAGGAGGTCGCTGCACGACGAGC
TGTTGGAGCTATTTGACACGAGGCTTGACGAGCACGCCTCTCTTTGGGAG
AACCTGGACTCGGCTGTCGGAGCCGGCGACATCGTCTCCAACGACGAGCG
CAACGTTAGGAGGTGGCGCCTGGGCCAGCTAGGGTTCATCACGGAGACCG
CCCTGTGGATGCTGGTGGTCAACGCCGTGGCTCACGAAGGAAGAGGCGGC
TTTGACGGGGAGGCGGCGGGGCTGGCCCGGGCGGAGAGGAGGTCGCTGCA
CGACGAGCTGTTGGAGCTATTTGACACGAGGCTTGACGAGCACGCCTCTC
TTTGGGAGAACCTGAGCCGCGGAGAGGGCGGGCGAGCCCCCGTGTCCATC
AGCCCCGCCTTCGTAGCACACGTCAAGGGCATGATACAGGGCTGGCTGGA
CCAAGCCAGAGTTAGCAAGAAGGAGAGGGATGCCACTACCCCCAAGTCTC
GGGCCGGCAAGTCTGGGCGGAGGGCGGCCGGTGGCCTTTGGAGCCCCCCC
CGGGTCGGCGGGTCGGCGATGATGCGCCAGAGCCGCGGAGAGGGCGGGCG
AGCCCCCGTGTCCATCAGCCCCGCCTTCGTAGCACACGTCAAGGGCATGA
TACAGGGCTGGCTGGACCAAGCCAGAGTTAGCAAGAAGGAGAGGGATGCC
ACTACCCCCAAGTCTCGGGCCGGCAAGTCTGGGCGGAGGGCGGCCGGTGG
CCTTTGGAGCCCCCCCCGGGTCGGCGGGTCGGCGATGATGCGCCAGGCCA
GCGACATGAGCGTCTCGAAAACGCCTGCCATCAACTGAGCCAGCGACATG
AGCGTCTCGAAAACGCCTGCCATCAACTGA
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