mRNA_Ecto-sp9_F_contig11317.1136.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11317.1136.1
Unique NamemRNA_Ecto-sp9_F_contig11317.1136.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Peptidylprolyl (isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZT2_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 3.060e-72
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGDSV 369
            +VIERHFGMEEVKGQSLKVISE+VVNEAINNLD+KAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEE YAAQLGDSV
Sbjct:  119 EVIERHFGMEEVKGQSLKVISEVVVNEAINNLDVKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEEGYAAQLGDSV 241
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.040e-18
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGDSV 369
            Q++  ++G + +K  +L++I++  V +AI +  ++AIG AELVQD   +    TPG P+ L+VK+D+WPEV     YTGF +  E P  D+ R  A    L+ER          YAA  GD+V
Sbjct:   61 QILVNYYGAQLIKTSALELITDSAVKKAIEDAGVRAIGQAELVQDPESLVATLTPGEPLHLDVKVDIWPEVKYNGPYTGFMVTAEAPAFDKERYDATMDRLRERACTTAAAPADYAAGKGDAV 183
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Peptidylprolyl (isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z9T8_NANGC)

HSP 1 Score: 77.0 bits (188), Expect = 5.430e-14
Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:   22 GMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGDS 366
            G + +  ++L ++ E  + +AI+  D+KA+G A LV     +   F PG P+++E+ +DV+PEV     Y G +++V+  P++  +V  A + L+++ V L DT   Y  +LGDS
Sbjct:  113 GPQVIINEALDILCEDALKKAIDESDVKAVGQASLVSHPETLIAAFKPGEPIVMELTVDVYPEVEFTGPYAGLKVQVDRIPLENEKVKQALESLRKKRVRLVDTAPGYEGKLGDS 227
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSM2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.260e-14
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    4 VIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGDSV 369
            V+E+  G E +   +++ I+E  V++AI    ++AIG AEL+    ++   +TPG P+ LEVK+DVWPE+       G  +E E P  ++     A KGL++R     D E    A +GD++
Sbjct:   64 VLEQRIGKEALTSGAMETIAETFVSDAIKQSGVQAIGQAELMTPAELIVASYTPGEPLDLEVKVDVWPELEFTGSLEGHTIEAEAPQYNQTAYDLAMKGLRQRYAKTADKE--GGAAIGDAL 183
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBK1_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 2.510e-13
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAEL-VQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLG 360
            QV+  H G   V G + + +  + V +A+   ++  IG AEL V D+  +   F PG+P    +K+DVWPE  IV EY G E+E EE P DE  +  A   LQ+++       +   A+LG
Sbjct:   60 QVLLSHIGKRNVYGSACEELFNISVGKALKESNVNFIGQAELDVDDVEKLIAEFHPGSPFSFGIKIDVWPETEIVGEYKGLEIEAEEEPFDERLIDEALVELQKKHSSTMLAGDGSVAELG 180
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Trigger (factor n=7 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A1Z4UQY2_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 6.310e-8
Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGD 363
            QV+ +  G   +K   L+ +   VV +A+   D+KAIG   LV     +   + PG P+     +DV PE+ I ++YTGF+++ EE   D  RV       +++   L   E   AAQ+GD
Sbjct:   52 QVLLQRLGSSRIKASVLEELIPEVVEQAVKQEDIKAIGQPRLVSSFDDLINNYKPGEPLTFAAAVDVEPEIKI-QQYTGFQVKAEEIKHDPTRVDTVLDQERQKMSTLIPVE-GRAAQIGD 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Trigger (factor n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZBS0_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-7
Identity = 36/121 (29.75%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGD 363
            Q++ +  G+  +K   L+ +   +V EA+   D+ AIG   L+     +   + PG P+ +   +DV PEV I+ +YTGF+++ EE   D  +V       +++   L   E    AQLGD
Sbjct:   52 QILLQRLGVSRIKASVLEELIPEIVEEAVKQEDIAAIGQPRLLSSFDDLINNYEPGQPLTVAASVDVEPEV-IINKYTGFQVQAEEIKYDSTKVDKILDEKRQQMATLIPVE-GRPAQLGD 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: trigger (factor n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI000AA9AE07)

HSP 1 Score: 52.4 bits (124), Expect = 2.270e-5
Identity = 34/120 (28.33%), Postives = 59/120 (49.17%), Query Frame = 1 
Query:    4 VIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQLGD 363
            ++ +  G+  +K  +L+ +   VV +A+    + AIG   L      +   + PG  +     +DV PEV ++K+YTGF+++ EE   D  RV       +++   L   E   AAQ+GD
Sbjct:   53 ILLQRLGVSRIKASALEELIPEVVEQAVKQEAINAIGQPRLRSSFDELINNYEPGKALTFSAAVDVEPEV-VLKQYTGFQVQAEEIKYDSTRVDTVIDRERQQMATLIPVE-GRAAQIGD 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Trigger (factor n=1 Tax=Leptolyngbya foveolarum TaxID=47253 RepID=A0A2W4WFX8_9CYAN)

HSP 1 Score: 52.4 bits (124), Expect = 2.340e-5
Identity = 32/118 (27.12%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQ 354
            Q++ +  G  ++K  +L+ I + V+ +AI   ++ A+G+ +L  +   +   + PG P  L   +DV P V +  EY G  ++ EE    E RV    +G +E    L   E+  A +
Sbjct:   52 QILIQRIGTMQLKAAALEEIVQSVIEKAIKQEEIDALGNYQLQSNFEELMGTYKPGEPFTLSASVDVPPRVKL-SEYKGLSVQAEEIKTKEGRVDETLEGYRENLATLVPVEDRVAKE 168
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Match: Trigger (factor n=2 Tax=Cyanobacteria TaxID=1117 RepID=B4WRF5_SYNS7)

HSP 1 Score: 51.2 bits (121), Expect = 5.820e-5
Identity = 30/118 (25.42%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:    1 QVIERHFGMEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAPMMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVLEDTEESYAAQ 354
            Q++ +  G  ++K  +L+ + + V+ +AI   +++A+G+ +L  D   +   +TPG P +++  +DV P V + K Y    ++ EE    + RV    +G +E    L   E+  A +
Sbjct:   52 QILIQRIGAVQLKAAALEDMLQTVIEKAIKQEEIEALGNYQLQSDFESLVSSYTPGEPFVIKASVDVPPRVALSK-YKDLSVKAEEVKPKDSRVDETIEGYRENLATLVPVEDRTAKE 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11317.1136.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Peptidylprolyl3.060e-7296.75isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6... [more]
Peptidylprolyl3.040e-1838.21isomerase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Peptidylprolyl5.430e-1433.04isomerase n=3 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
Peptidylprolyl7.260e-1434.43isomerase n=1 Tax=Phaeomonas parva TaxID=124430 Re... [more]
Hypothetical2.510e-1335.54protein (Fragment) n=1 Tax=Timspurckia oligopyreno... [more]
Trigger6.310e-832.23factor n=7 Tax=Sphaerospermopsis TaxID=752201 RepI... [more]
Trigger2.980e-729.75factor n=2 Tax=unclassified Sphaerospermopsis TaxI... [more]
trigger2.270e-528.33factor n=1 Tax=Sphaerospermopsis aphanizomenoides ... [more]
Trigger2.340e-527.12factor n=1 Tax=Leptolyngbya foveolarum TaxID=47253... [more]
Trigger5.820e-525.42factor n=2 Tax=Cyanobacteria TaxID=1117 RepID=B4WR... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11317contigEcto-sp9_F_contig11317:234..3669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue3.3e-53
Seed eggNOG ortholog2880.D7FZQ0
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs2QUET@2759,COG0544@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size369
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11317.1136.1prot_Ecto-sp9_F_contig11317.1136.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11317 258..3669 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928378.4300106-UTR-Ecto-sp9_F_contig11317:233..2571622928378.4300106-UTR-Ecto-sp9_F_contig11317:233..257Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11317 234..257 +
1692277851.7596343-UTR-Ecto-sp9_F_contig11317:233..2571692277851.7596343-UTR-Ecto-sp9_F_contig11317:233..257Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11317 234..257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928378.4409964-CDS-Ecto-sp9_F_contig11317:257..3141622928378.4409964-CDS-Ecto-sp9_F_contig11317:257..314Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 258..314 +
1692277851.7703319-CDS-Ecto-sp9_F_contig11317:257..3141692277851.7703319-CDS-Ecto-sp9_F_contig11317:257..314Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 258..314 +
1622928378.4544783-CDS-Ecto-sp9_F_contig11317:808..9191622928378.4544783-CDS-Ecto-sp9_F_contig11317:808..919Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 809..919 +
1692277851.7799582-CDS-Ecto-sp9_F_contig11317:808..9191692277851.7799582-CDS-Ecto-sp9_F_contig11317:808..919Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 809..919 +
1622928378.4643867-CDS-Ecto-sp9_F_contig11317:1861..19471622928378.4643867-CDS-Ecto-sp9_F_contig11317:1861..1947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 1862..1947 +
1692277851.789529-CDS-Ecto-sp9_F_contig11317:1861..19471692277851.789529-CDS-Ecto-sp9_F_contig11317:1861..1947Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 1862..1947 +
1622928378.4766946-CDS-Ecto-sp9_F_contig11317:3578..36691622928378.4766946-CDS-Ecto-sp9_F_contig11317:3578..3669Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 3579..3669 +
1692277851.799132-CDS-Ecto-sp9_F_contig11317:3578..36691692277851.799132-CDS-Ecto-sp9_F_contig11317:3578..3669Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11317 3579..3669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11317.1136.1

>prot_Ecto-sp9_F_contig11317.1136.1 ID=prot_Ecto-sp9_F_contig11317.1136.1|Name=mRNA_Ecto-sp9_F_contig11317.1136.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MEEVKGQSLKVISELVVNEAINNLDLKAIGSAELVQDISVVTQLFTPGAP
MMLEVKMDVWPEVNIVKEYTGFELEVEEPPIDEPRVAAAWKGLQERNVVL
EDTEESYAAQLGDSV
back to top

mRNA from alignment at Ecto-sp9_F_contig11317:234..3669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11317.1136.1 ID=mRNA_Ecto-sp9_F_contig11317.1136.1|Name=mRNA_Ecto-sp9_F_contig11317.1136.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3436bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11317:234..3669+ (Ectocarpus species9 EcSCA_722f female)
CAGGTGATCGAGAGACACTTCGGCATGGAGGAGGTCAAGGGCCAGTCGCT
CAAGGTTATCTCCGAGCTTGTTGTCAACGAGGTATGTACGTCTATTTTCA
GGGTGTTTGTCCTACGTCGTAGTTGCTGTGGCTGCCAACCTTGTGTACAA
CCCATTCACCAATGCGTTGTTCCACGTGTGGTGCGCGTTGTTGGCCAAAT
AAATGGTTGGAAAATCAGGCCATCAACAACTTGGATGTGTGAATACTTCC
ATCTGATGAACTCAGGCTGAGCTCTGAGCTTGTGGTAACCACCCCGATCG
TTTTAGCAGCTTGTTTCGGCGATGTTTAACTTTGGAAATTAGGCCTAACC
CTAACCCTAAACTGATGACCTTAGCTAAGTTCTGAGCTTACCGTAATCCA
CCCTACCATTTCCGTCGCTTGTGTAGGCGATGTTCACCATGGGAAATCAG
GCGATCAACATAATTCTTGCATCCGATGACCTTAGGCTGAGTTATTACCG
ATTGCAAGAAACTCAATCCCTTAACCTTGCCGTGTTGATACCTTGCCGTG
TTGATACCTAACGTGGGGTACCCAGGCGATCAACAACTTGGACCTGAAGG
CTATCGGCAGCGCCGAGCTGGTCCAGGACATCTCGGTAGTCACGCAGCTA
TTCACCCCGGGGGCACCGATGATGCTCGAGGTTAAGGTGAGAGCTGCTGG
CAGCCTTCGACGTTCTTGTGGGTGTATTTGTCTGTTTGGTGTTCTCTGCC
TCGGGGGGCGGGGGGGCTGGTGTACATACTGTACAAGCTGATTGTTTAGG
AGCCGTACGTACGTTTTTGAAGCGTTCCGCGTTAGTGCTTGCGGCGTCGT
CTGACGTCGATGGAGGCATTGCGGTCTACTCATCGGGGGGGGGGGGTCGT
AGATTGACGTCTTTTCAAATACAATTTCTTGATGATCTTTTGTCCTTATG
AAATCGGCGTACAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTTTTGTGATGGTTCTATCGGTACAGTCAGTAGCGGCTAGCGGCTACGGT
TTCAGGGAGGATGGGGACAAGCACAAAACTCTCTAATATCCGGTTTACGT
CCCCAGTCTTGGTTGTTGTCGGTGGCCGTGGTGCTACCGCATCGTGCCGA
CATATCATCGCTGAAGCTTCCTTATTTGTGATGGTCGTGTCTCGAGCACT
CGTTCATGACGGCGCCGTTGCATGTAGCGCAGTCGCAATGCTCAGGAGAC
TGTGCGACCTAGGGTGTCCATACACCGATAGATCAGATCCTTTCAGCTCG
GCCGAAACAGCACAGTAGCTCTGTTGTTTCATGGTGTATACGTCCCGCTT
GAGCTAGCTTTGCCACTGTGCTTGGAAATTTAGGGACCATCGTGATAATC
ATTCACAGTTGTATCCGAATGGTCGTATGTTTCCAAACAGTGACATTATG
TAGGTGGTAGGCGATCTGTAGGACATCTGCCATCCGCTCATATTTGATGG
TGAGCTGTAGACAACTAATCGAAGCCCATGATCTGATGTGCGGAAACACG
CGGACAAAGAAAATTCTCTCATGGCCGTGCTATCGCCGAGCAGTGTATCA
AACCCTCAACTTGATTTTGTTTTGTCAGATGGACGTGTGGCCGGAGGTAA
ACATCGTAAAGGAATACACGGGGTTCGAGCTGGAGGTGGAGGAGCCGCCG
ATCGACGAGCCACGGTAGGTACAGTGCCCGCCCTCGTTGTATTTTGCTGG
TCGAAAACCAGAGCTCCCGCTAGCCGCGTGGGTAGCTTGCTTGGCCAAGT
CCGGTGACATTCATTCCCGTGTTGCAGCATACTCGCAACTCTCGGTTTGT
GTTTGATGTTGTTGTTTTCATACCTGGTGTGTGTTGGTACATTCTGCCGC
TCTTCTCTCGGTTGCTTTCGTTTTTCGGTGTGATTCTGAATATACGAAGT
ACATTGCTTTCGACCCACCTCCTGTAGCCTGAAGAAAGGGTCGTAGATGG
ACATGTCGACTTGGTCTCGATGGTCGATGAAAGACGAGTCGACACCCTCG
CTTGACCCCGGATGTCGTTGCACAGGACTCATGGACGTTATCTGTAGGGT
ATTGGAAGTGCCACAGAACTCACAGAAGTATCCCGCAGGGTATCGAGAGT
GTCACAGAACTCCTCCGTAACGTTTTGCAGGGTAGATATGTACTCGGAAA
AACACCACCGGTAGATACACTCTTGTGGAATTCATATGAAGGGGTGCCGT
CGAGATTGCACTTCTCGACTTCGAAGAGGCTAGCGACCGCCGCGGACGAC
CGAGCAGGCATCGGAAGTGATTAAGCCTTGCCTGACGGTTCCCCGCGTCT
GTCGCAATCGGCGCTTCGTGCATTTCAGTATGATCTATCTTCCAGTTGGC
CTTGTTAGCGGGGGAACAGAAGGGCTTGAAGGTGGTATTTGCTGGCGATT
TTCGTTGATGTTGTCGAGTACAGACTTGCGGGCCTCGATAAGGTAGCTCC
GGCGGCGGAGGTGGCACTCACCGCAGCGGACGCCGGCGATGTCGGAGTTG
AGTTTCGGTGACTGCCGCCTCCTCTGACTTAGCTACCTTAAATGGACCCG
CAAGTCTGTGTGACAACTTGATACGAAATCGCCAGCAAAGACCCCACAGT
TAAGCCTTTCTGTTCCCCCACTTGACGTATTTTAAACTCGAGATTCCTGG
GTTTTTGACTGGATTGTCGGGATTCCCGAGGGTTAGAGATTTGAAATACC
GCGCGGAGATTCCCGAACCAGGTTGTTTTCACACGTTGATGGTGTTGGTA
TGTGCAGATAGCATGGGGGCGCTGCATCGATTTTTGACGTTTAGCAACTG
CAAGTGCTGTTTTCCCTTACACATATATCGATCGCTTTTTTGTGTGTCAG
GCGCATGTGATTTGGACCTGCACGACCTTCTCGCTCACAAGGAGCCCTGC
CTGGTGACACGTGACTAGTGCATTACCCCATCACATCACTGCCTTTGCCT
CTTACTGTGCTGCCGTCATGGCATCTTCGGACATGAAGATACGGGTACCT
TATAGATAAGACGTCCTCCTTCTGCCCAAAACGACCGAGTCGGATCGAGT
CTGCTGGTTGAAACTATTTATTACCGTCGTCGCGTGTGCAGGGGTGCTGT
GCGAATAATACAAGTGGTGTGGTGCTCTCATCACGTCCTCGTGCCAATCC
AATCCAACCCGATCGAGATACCCCTTGGGACGACGACCCCAGGTCGCTCG
TTTTCGTCTCTCACCGTCCATCACCCACCCCCCTCTTGTTCGAAATGGTT
CTGACTAACCTGCTGTACTCCTGTGTCTGTGTCATTATTTGCCAGCGTGG
CGGCCGCGTGGAAGGGTCTCCAAGAGCGTAATGTGGTGTTGGAGGACACG
GAAGAAAGTTACGCCGCACAGCTCGGCGACTCGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11317:234..3669+

>mRNA_Ecto-sp9_F_contig11317.1136.1 ID=mRNA_Ecto-sp9_F_contig11317.1136.1|Name=mRNA_Ecto-sp9_F_contig11317.1136.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11317:234..3669+ (Ectocarpus species9 EcSCA_722f female)
ATGGAGGAGGTCAAGGGCCAGTCGCTCAAGGTTATCTCCGAGCTTGTTGT
CAACGAGATGGAGGAGGTCAAGGGCCAGTCGCTCAAGGTTATCTCCGAGC
TTGTTGTCAACGAGGCGATCAACAACTTGGACCTGAAGGCTATCGGCAGC
GCCGAGCTGGTCCAGGACATCTCGGTAGTCACGCAGCTATTCACCCCGGG
GGCACCGATGATGCTCGAGGTTAAGGCGATCAACAACTTGGACCTGAAGG
CTATCGGCAGCGCCGAGCTGGTCCAGGACATCTCGGTAGTCACGCAGCTA
TTCACCCCGGGGGCACCGATGATGCTCGAGGTTAAGATGGACGTGTGGCC
GGAGGTAAACATCGTAAAGGAATACACGGGGTTCGAGCTGGAGGTGGAGG
AGCCGCCGATCGACGAGCCACGATGGACGTGTGGCCGGAGGTAAACATCG
TAAAGGAATACACGGGGTTCGAGCTGGAGGTGGAGGAGCCGCCGATCGAC
GAGCCACGCGTGGCGGCCGCGTGGAAGGGTCTCCAAGAGCGTAATGTGGT
GTTGGAGGACACGGAAGAAAGTTACGCCGCACAGCTCGGCGACTCGGTGC
GTGGCGGCCGCGTGGAAGGGTCTCCAAGAGCGTAATGTGGTGTTGGAGGA
CACGGAAGAAAGTTACGCCGCACAGCTCGGCGACTCGGTG
back to top