mRNA_Ecto-sp9_F_contig11315.1132.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11315.1132.1
Unique NamemRNA_Ecto-sp9_F_contig11315.1132.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SSU8_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 2.060e-30
Identity = 52/67 (77.61%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            Q+IVTTPEKWDIITRK+G+RTYTQLVRL+IIDE+HLLHD+RGPVLES+VART+RQ+ESTQ  +  +G
Sbjct:   62 QIIVTTPEKWDIITRKSGERTYTQLVRLLIIDEVHLLHDDRGPVLESIVARTVRQVESTQEMVRIVG 128
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 7.820e-30
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIE+TQ  +  +G
Sbjct:  631 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIEATQEMVRIVG 697
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVE9_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 1.680e-29
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    7 LDQVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            + ++I+TTPEKWDIITRK+GDRTYTQLVRLVIIDEIHLLHD+RGPVLES+VART+RQIE+TQ  +  +G
Sbjct:   32 IKKLIITTPEKWDIITRKSGDRTYTQLVRLVIIDEIHLLHDHRGPVLESIVARTVRQIETTQEMIRVVG 100
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E0_HETAK)

HSP 1 Score: 112 bits (280), Expect = 4.470e-29
Identity = 53/60 (88.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQ 192
            QVIVTTPEKWDIITRKAGDRTYTQLVRL+IIDE+HLLHD+RGPVLE+LVART+R+IE+TQ
Sbjct:  184 QVIVTTPEKWDIITRKAGDRTYTQLVRLMIIDEVHLLHDDRGPVLEALVARTVRRIETTQ 243
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: (rape) (hypothetical protein n=2 Tax=Brassica TaxID=3705 RepID=A0A816IJM1_BRANA)

HSP 1 Score: 115 bits (287), Expect = 4.480e-29
Identity = 54/67 (80.60%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            Q+IVTTPEKWDIITRK+GDRTYTQLVRL+IIDEIHLLHDNRGPVLES+VART+RQIE+T+ ++  +G
Sbjct:   71 QIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIRLVG 137
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3BL12_BRAOL)

HSP 1 Score: 115 bits (287), Expect = 6.630e-29
Identity = 54/67 (80.60%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            Q+IVTTPEKWDIITRK+GDRTYTQLVRL+IIDEIHLLHDNRGPVLES+VART+RQIE+T+ ++  +G
Sbjct:  100 QIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIRLVG 166
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Uncharacterized (protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5VCR9_9CNID)

HSP 1 Score: 115 bits (289), Expect = 1.750e-28
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            QVIV TPEKWDIITRKAGDRTYTQLVRL+IIDEIHLLHDNRGPVLE+++ARTIRQIESTQ  +  +G
Sbjct:  586 QVIVCTPEKWDIITRKAGDRTYTQLVRLIIIDEIHLLHDNRGPVLEAIIARTIRQIESTQEPVRLVG 652
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Uncharacterized (protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DUR0_EMIHU)

HSP 1 Score: 115 bits (289), Expect = 1.750e-28
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            Q+IVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHD+RGPVLES+VARTIRQIE+TQ  +  +G
Sbjct:  602 QLIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDHRGPVLESIVARTIRQIETTQEMIRVVG 668
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0NX78_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 1.750e-28
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            QVIVTTPEKWDIITRK+GDRTYTQLVRLVIIDEIHLLHD+RGPVLES+VARTIRQIE+TQ  +  +G
Sbjct:  634 QVIVTTPEKWDIITRKSGDRTYTQLVRLVIIDEIHLLHDHRGPVLESIVARTIRQIETTQEMIRVVG 700
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Match: Uncharacterized (protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1B6QH23_SORBI)

HSP 1 Score: 115 bits (289), Expect = 1.750e-28
Identity = 54/67 (80.60%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:   13 QVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLESLVARTIRQIESTQVSLFFLG 213
            QVIVTTPEKWDI+TRK+GDRTYTQLV+L+IIDEIHLLHDNRGPVLES+VART+RQIE+T+V +  +G
Sbjct:  649 QVIVTTPEKWDIVTRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKVHIRLVG 715
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11315.1132.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical2.060e-3077.61protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID... [more]
Uncharacterized7.820e-3089.55protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4... [more]
Hypothetical1.680e-2976.81protein (Fragment) n=1 Tax=Phaeocystis antarctica ... [more]
Hypothetical4.470e-2988.33protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
(rape)4.480e-2980.60hypothetical protein n=2 Tax=Brassica TaxID=3705 R... [more]
Uncharacterized6.630e-2980.60protein n=1 Tax=Brassica oleracea var. oleracea Ta... [more]
Uncharacterized1.750e-2883.58protein n=1 Tax=Clytia hemisphaerica TaxID=252671 ... [more]
Uncharacterized1.750e-2885.07protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]
Hypothetical1.750e-2885.07protein (Fragment) n=2 Tax=Coccolithales TaxID=418... [more]
Uncharacterized1.750e-2880.60protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11315contigEcto-sp9_F_contig11315:75..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue5.2e-25
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928378.233614-CDS-Ecto-sp9_F_contig11315:74..2871622928378.233614-CDS-Ecto-sp9_F_contig11315:74..287Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11315 75..287 -
1692277851.6676323-CDS-Ecto-sp9_F_contig11315:74..2871692277851.6676323-CDS-Ecto-sp9_F_contig11315:74..287Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11315 75..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11315.1132.1prot_Ecto-sp9_F_contig11315.1132.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11315 75..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11315.1132.1

>prot_Ecto-sp9_F_contig11315.1132.1 ID=prot_Ecto-sp9_F_contig11315.1132.1|Name=mRNA_Ecto-sp9_F_contig11315.1132.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=71bp
VLLDQVIVTTPEKWDIITRKAGDRTYTQLVRLVIIDEIHLLHDNRGPVLE
SLVARTIRQIESTQVSLFFLG
back to top

mRNA from alignment at Ecto-sp9_F_contig11315:75..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11315.1132.1 ID=mRNA_Ecto-sp9_F_contig11315.1132.1|Name=mRNA_Ecto-sp9_F_contig11315.1132.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11315:75..287- (Ectocarpus species9 EcSCA_722f female)
GTGTTACTTGATCAGGTGATCGTCACCACCCCCGAGAAGTGGGACATCAT
CACCAGGAAGGCGGGGGACAGGACGTACACCCAGCTGGTCCGGCTGGTGA
TCATCGACGAGATCCACCTTCTCCACGACAACCGCGGGCCTGTGCTAGAG
AGTCTCGTGGCGAGAACCATCAGGCAGATCGAGTCAACTCAGGTCAGTCT
TTTTTTTTTGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11315:75..287-

>mRNA_Ecto-sp9_F_contig11315.1132.1 ID=mRNA_Ecto-sp9_F_contig11315.1132.1|Name=mRNA_Ecto-sp9_F_contig11315.1132.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11315:75..287- (Ectocarpus species9 EcSCA_722f female)
GTGTTACTTGATCAGGTGATCGTCACCACCCCCGAGAAGTGGGACATCAT
CACCAGGAAGGCGGGGGACAGGACGTACACCCAGCTGGTCCGGCTGGTGA
TCATCGACGAGATCCACCTTCTCCACGACAACCGCGGGCCTGTGCTAGAG
AGTCTCGTGGCGAGAACCATCAGGCAGATCGAGTCAACTCAGGTCAGTCT
TTTTTTTTTGGGGGTGTTACTTGATCAGGTGATCGTCACCACCCCCGAGA
AGTGGGACATCATCACCAGGAAGGCGGGGGACAGGACGTACACCCAGCTG
GTCCGGCTGGTGATCATCGACGAGATCCACCTTCTCCACGACAACCGCGG
GCCTGTGCTAGAGAGTCTCGTGGCGAGAACCATCAGGCAGATCGAGTCAA
CTCAGGTCAGTCTTTTTTTTTTGGGG
back to top