mRNA_Ecto-sp9_F_contig11292.1110.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT8_ECTSI) HSP 1 Score: 235 bits (600), Expect = 2.060e-70 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD
Sbjct: 1 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 118
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: ATP-cone (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL51_9ARCH) HSP 1 Score: 157 bits (397), Expect = 9.960e-47 Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
M+VIKRDGR+E V FDKIT+RI+ LCYGLDP +V+ T+I+QKV+ G+YPGVTT ELDELAAQTAA AT+HPD S LAARISVSNLHK T K FS +E+L +V P TG+ + L+S+
Sbjct: 1 MYVIKRDGRRENVHFDKITSRINKLCYGLDPNHVDATIISQKVVPGLYPGVTTFELDELAAQTAASCATRHPDFSTLAARISVSNLHKQTSKVFSDVVELLRNHVHPATGQPAPLVSE 118
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D6Y3_PHYNI) HSP 1 Score: 160 bits (404), Expect = 2.430e-45 Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
M+VIKRDGR+E V FDKITARI+ LCYGL+P YV+ I+QKV++GVYPGVTTSELDELAA+TAAYQ+TQHPD S LAARI+VSNLHK T K FS IE+ H V +TG + LI+D
Sbjct: 1 MYVIKRDGRREDVKFDKITARITKLCYGLNPDYVDAVKISQKVVAGVYPGVTTSELDELAAETAAYQSTQHPDFSKLAARIAVSNLHKNTNKVFSDNIEVFHKNVHEKTGAAAPLIAD 118
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B7C0_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.030e-44 Identity = 91/145 (62.76%), Postives = 107/145 (73.79%), Query Frame = 3
Query: 30 ES*L*PGSSTHKRTSSTFFVW*EGSSRMFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
ES P T KR S + EG M+V KRDGR++ V FDKIT RI LCYGL+ ++VEP LIA+KV+ GVY GVTTSELDELAAQTAAYQ+T+HPD S+LAARISVSNLHK T KTFS IE H Y+ P+TG+ + LISD
Sbjct: 18 ESVASPRPPTIKRRESPNNL--EGG--MYVFKRDGRRQAVHFDKITTRIKKLCYGLNQQFVEPVLIAKKVVEGVYKGVTTSELDELAAQTAAYQSTKHPDFSILAARISVSNLHKETIKTFSDVIENFHKYIHPKTGQPAPLISD 158
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2A3_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.210e-44 Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 3
Query: 105 SRMFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
S M+V KRDGR+E+V FDKIT+RIS LCYGLD K+V+P I+QKVI GVYPGVTT+ELDELAAQTAA AT HPD S+LAARISVSNLHK T KTFS TI L+ + P+T E + LIS+
Sbjct: 2 SSMYVQKRDGRRESVYFDKITSRISKLCYGLDVKFVDPVAISQKVIQGVYPGVTTTELDELAAQTAASFATHHPDASILAARISVSNLHKMTNKTFSDTIHGLYKCIHPKTKESAPLISE 121
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N1_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.220e-44 Identity = 84/118 (71.19%), Postives = 95/118 (80.51%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
M+V+KRDGR E V FDKIT+RI LCYGLD +YV+P +++QKVI GVYPGVTTSELDELAAQTAAY ATQHP S LAARISVSNLHK T K FS IE LH YV P+T + + LISD
Sbjct: 1 MYVVKRDGRSEAVYFDKITSRIKKLCYGLDDRYVDPIILSQKVIQGVYPGVTTSELDELAAQTAAYMATQHPGWSQLAARISVSNLHKGTCKLFSDNIERLHKYVHPKTKQPAPLISD 118
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase subunit alpha (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Y2A0E8_9FLAO) HSP 1 Score: 151 bits (381), Expect = 5.980e-44 Identity = 76/117 (64.96%), Postives = 94/117 (80.34%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLIS 461
M V+KR G++ETVSFDKITARI LCYGL+ Y+EP I +KVI G+Y GVTT+ELD LAA+TAA AT HPD +LLAARI+VSNLHK T K+FS+T+E L+ YV P+TG+ + LIS
Sbjct: 1 MQVVKRSGKRETVSFDKITARIKKLCYGLEQNYIEPIEIGKKVIQGLYDGVTTTELDNLAAETAATMATSHPDYALLAARIAVSNLHKNTKKSFSETVEGLYNYVDPKTGKNAGLIS 117
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4M9A0_9STRA) HSP 1 Score: 163 bits (413), Expect = 6.820e-44 Identity = 84/117 (71.79%), Postives = 97/117 (82.91%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLIS 461
MFV+KR+GR+E+V FDKIT+RIS LCYGLD K+V+P +I+QKVI GVYPGVTT ELDELAA+TAA ATQHPD S+LAARISVSNLHK T KTFS IE H YV P+T E + LIS
Sbjct: 3 MFVVKRNGRRESVYFDKITSRISKLCYGLDNKHVDPVIISQKVIQGVYPGVTTVELDELAAETAASFATQHPDCSVLAARISVSNLHKMTTKTFSANIERFHKYVHPKTKEPAPLIS 119
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXG1_SAPPC) HSP 1 Score: 162 bits (411), Expect = 1.140e-43 Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLISD 464
M+V+KRDGR E V FDKITARI+ LCYGLDP YV P LIAQKV++GVY GVTTSELDELAA+TAAYQATQHPD S LAARIS+SNLHK T K FS IE+ + +TG + LI+D
Sbjct: 1 MYVVKRDGRSEEVKFDKITARINKLCYGLDPNYVNPILIAQKVVAGVYAGVTTSELDELAAETAAYQATQHPDFSKLAARISISNLHKSTHKVFSDNIELFYNNKHAKTGAPAPLIAD 118
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Match: Ribonucleoside-diphosphate (reductase subunit alpha n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=UPI00199B53C4) HSP 1 Score: 157 bits (396), Expect = 1.180e-43 Identity = 75/117 (64.10%), Postives = 98/117 (83.76%), Query Frame = 3
Query: 111 MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGVTTSELDELAAQTAAYQATQHPDMSLLAARISVSNLHKCTWKTFSKTIEMLHTYVLPQTGERSSLIS 461
M+VIKRDGR+E+V FDKITARI LCYGLDP +V+P +A KV++G+Y GV+T+ELD LAA+TAA T+HPD ++LAAR++VSNLHK T K+FS TI+ L+TYV P+TGE +SLI+
Sbjct: 1 MYVIKRDGRRESVKFDKITARIEKLCYGLDPTFVQPVEVAMKVVAGIYDGVSTAELDNLAAETAASMTTRHPDYAILAARVAVSNLHKNTQKSFSGTIKRLYTYVDPKTGENASLIA 117 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11292.1110.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11292.1110.1 >prot_Ecto-sp9_F_contig11292.1110.1 ID=prot_Ecto-sp9_F_contig11292.1110.1|Name=mRNA_Ecto-sp9_F_contig11292.1110.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp MFVIKRDGRKETVSFDKITARISHLCYGLDPKYVEPTLIAQKVISGVYPGback to top mRNA from alignment at Ecto-sp9_F_contig11292:878..2500+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11292.1110.1 ID=mRNA_Ecto-sp9_F_contig11292.1110.1|Name=mRNA_Ecto-sp9_F_contig11292.1110.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1623bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11292:878..2500+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11292:878..2500+ >mRNA_Ecto-sp9_F_contig11292.1110.1 ID=mRNA_Ecto-sp9_F_contig11292.1110.1|Name=mRNA_Ecto-sp9_F_contig11292.1110.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11292:878..2500+ (Ectocarpus species9 EcSCA_722f female)back to top |