mRNA_Ecto-sp9_F_contig1125.1079.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1125.1079.1
Unique NamemRNA_Ecto-sp9_F_contig1125.1079.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1125.1079.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.450e-13
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:    1 YASSLELQLLSLVVCETFRSVQTLDMRIDGEKPLSLLSPTTSHATANDRSREVCNSSRVPAVQAYGVT 204
            YAS+LELQL+SL  C   R V TL +R+D + P SL SP  SHAT   RSRE C S+RVPAVQA G+T
Sbjct:   37 YASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLT 104
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BLAST of mRNA_Ecto-sp9_F_contig1125.1079.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.360e-12
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 YASSLELQLLSLVVCETFRSVQTLDMRIDGEKPLSLLSPTTSHATANDRSREVCNSSRVPAVQAYGVT 204
            Y S+LELQL+SL VC   R VQTL +R+  + P SL  P+ +H T N+RS +VC SSRVP VQA+G+T
Sbjct:   29 YVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLT 96
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BLAST of mRNA_Ecto-sp9_F_contig1125.1079.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.120e-5
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 YASSLELQLLSLVVCETFRSVQTLDMRIDGEKPLSLLSPTTSHATANDRSREV 159
            YAS+LELQL+SL  C   R V TL +R+D   P SL SP T+  TA+ RSR+V
Sbjct:   61 YASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSPRTTPITAHKRSRKV 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1125.1079.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.450e-1360.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.360e-1255.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.120e-554.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1125contigEcto-sp9_F_contig1125:24752..25596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.3601582-CDS-Ecto-sp9_F_contig1125:24751..251741622928368.3601582-CDS-Ecto-sp9_F_contig1125:24751..25174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 24752..25174 +
1692277848.9057302-CDS-Ecto-sp9_F_contig1125:24751..251741692277848.9057302-CDS-Ecto-sp9_F_contig1125:24751..25174Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 24752..25174 +
1622928368.3753498-CDS-Ecto-sp9_F_contig1125:25563..255961622928368.3753498-CDS-Ecto-sp9_F_contig1125:25563..25596Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 25564..25596 +
1692277848.9185839-CDS-Ecto-sp9_F_contig1125:25563..255961692277848.9185839-CDS-Ecto-sp9_F_contig1125:25563..25596Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 25564..25596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1125.1079.1prot_Ecto-sp9_F_contig1125.1079.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1125 24752..25596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1125.1079.1

>prot_Ecto-sp9_F_contig1125.1079.1 ID=prot_Ecto-sp9_F_contig1125.1079.1|Name=mRNA_Ecto-sp9_F_contig1125.1079.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=152bp
YASSLELQLLSLVVCETFRSVQTLDMRIDGEKPLSLLSPTTSHATANDRS
REVCNSSRVPAVQAYGVTRLRGYWSAERLEPATCIQRLKRPRTWCRCRPP
YSRYRLVISSTSPSSEHSSYHRRAGGRSGYQQCGYDGVCNAGAPRSNPWR
S*
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mRNA from alignment at Ecto-sp9_F_contig1125:24752..25596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1125.1079.1 ID=mRNA_Ecto-sp9_F_contig1125.1079.1|Name=mRNA_Ecto-sp9_F_contig1125.1079.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=845bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1125:24752..25596+ (Ectocarpus species9 EcSCA_722f female)
TATGCGTCTTCACTGGAGCTACAACTTTTGTCCCTGGTGGTTTGTGAGAC
ATTCAGAAGTGTCCAGACCTTGGACATGCGCATAGATGGAGAGAAGCCTC
TCAGCTTGTTGTCGCCTACCACATCACACGCCACGGCCAACGACCGCAGT
CGAGAGGTTTGCAACTCAAGTCGCGTACCGGCTGTACAAGCTTACGGTGT
AACTCGGTTAAGGGGATATTGGTCTGCAGAGAGGCTAGAACCGGCCACTT
GTATTCAAAGGCTCAAACGGCCGCGAACGTGGTGTCGTTGCCGGCCTCCC
TACTCCCGCTATCGCTTGGTTATAAGTTCAACCAGCCCATCGTCGGAACA
CTCATCCTACCATCGCAGAGCTGGGGGGAGGTCCGGCTATCAGCAGTGTG
GCTACGACGGGGTATGTAACGCGGTGAGGACACGACAGCGCCCAACGTGA
ACCTTCCTTGTGGACAACCAGAAGTAAAGGGTTGAATGTTGCTCATGATG
CGTTGTTATTTGAGGCGTGCCTGCCGCTGATTGTACCTACTGTGTAGAGC
GATCGCGGAAGCTGCGGGTGCGTTGGAGCCCAAAGGTCCTGTTGAATAAC
GCTTTTCTATTCACACCCTTTCTCAGTGCCACCTTGAGGAATCGACCCCG
TCAAGTGTTAGACTAGTACGGACAGAAGAAGGTACTGGGCAGAGAGAACG
GAACAGTTTTTAATGTGAAGACAACAATGACAACAGCATGAATGGGAACA
ATCAACACTCATTTTTCGCCATCGGATTTCTTATCGCATGTTGATTTCAT
GGTTCACCATAGGGAGCACCAAGGAGCAACCCATGGAGATCATAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1125:24752..25596+

>mRNA_Ecto-sp9_F_contig1125.1079.1 ID=mRNA_Ecto-sp9_F_contig1125.1079.1|Name=mRNA_Ecto-sp9_F_contig1125.1079.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1125:24752..25596+ (Ectocarpus species9 EcSCA_722f female)
TATGCGTCTTCACTGGAGCTACAACTTTTGTCCCTGGTGGTTTGTGAGAC
ATTCAGAAGTGTCCAGACCTTGGACATGCGCATAGATGGAGAGAAGCCTC
TCAGCTTGTTGTCGCCTACCACATCACACGCCACGGCCAACGACCGCAGT
CGAGAGGTTTGCAACTCAAGTCGCGTACCGGCTGTACAAGCTTACGGTGT
AACTCGGTTAAGGGGATATTGGTCTGCAGAGAGGCTAGAACCGGCCACTT
GTATTCAAAGGCTCAAACGGCCGCGAACGTGGTGTCGTTGCCGGCCTCCC
TACTCCCGCTATCGCTTGGTTATAAGTTCAACCAGCCCATCGTCGGAACA
CTCATCCTACCATCGCAGAGCTGGGGGGAGGTCCGGCTATCAGCAGTGTG
GCTACGACGGGGTATGTAACGCGTATGCGTCTTCACTGGAGCTACAACTT
TTGTCCCTGGTGGTTTGTGAGACATTCAGAAGTGTCCAGACCTTGGACAT
GCGCATAGATGGAGAGAAGCCTCTCAGCTTGTTGTCGCCTACCACATCAC
ACGCCACGGCCAACGACCGCAGTCGAGAGGTTTGCAACTCAAGTCGCGTA
CCGGCTGTACAAGCTTACGGTGTAACTCGGTTAAGGGGATATTGGTCTGC
AGAGAGGCTAGAACCGGCCACTTGTATTCAAAGGCTCAAACGGCCGCGAA
CGTGGTGTCGTTGCCGGCCTCCCTACTCCCGCTATCGCTTGGTTATAAGT
TCAACCAGCCCATCGTCGGAACACTCATCCTACCATCGCAGAGCTGGGGG
GAGGTCCGGCTATCAGCAGTGTGGCTACGACGGGGTATGTAACGCGGGAG
CACCAAGGAGCAACCCATGGAGATCATAAGGAGCACCAAGGAGCAACCCA
TGGAGATCATAA
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