mRNA_Ecto-sp9_F_contig11241.1069.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11241.1069.1
Unique NamemRNA_Ecto-sp9_F_contig11241.1069.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11241.1069.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-6
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = -1 
Query:  307 AGFVLIVVHAVVARPLTSHPNKAGTEHAGF 396
            AG VLIVVHAVV RPLTSHP KAGTEHAGF
Sbjct:  382 AGGVLIVVHAVVMRPLTSHPCKAGTEHAGF 411
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BLAST of mRNA_Ecto-sp9_F_contig11241.1069.1 vs.
Match: AAA_23 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8V1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.550e-6
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    1 DAAKHYDWVGGVGFSVTLVFRCFGD 75
            DAAKHYDWVGG GFSVTL FRCFG+
Sbjct:  640 DAAKHYDWVGGAGFSVTLFFRCFGE 664
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11241.1069.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.010e-5
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = -1 
Query:  307 GFVLIVVHAVVARPLTSHPNKAGTEHAGF 393
            G VLIVVHAVV RPLTSHP +AGTEHAGF
Sbjct:  184 GGVLIVVHAVVVRPLTSHPYEAGTEHAGF 212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11241.1069.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.510e-690.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
AAA_233.550e-688.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.010e-586.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11241contigEcto-sp9_F_contig11241:3660..4085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009230.1
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928367.2770846-CDS-Ecto-sp9_F_contig11241:3659..40851622928367.2770846-CDS-Ecto-sp9_F_contig11241:3659..4085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11241 3660..4085 -
1692277848.4556713-CDS-Ecto-sp9_F_contig11241:3659..40851692277848.4556713-CDS-Ecto-sp9_F_contig11241:3659..4085Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11241 3660..4085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11241.1069.1prot_Ecto-sp9_F_contig11241.1069.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11241 3660..4085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11241.1069.1

>prot_Ecto-sp9_F_contig11241.1069.1 ID=prot_Ecto-sp9_F_contig11241.1069.1|Name=mRNA_Ecto-sp9_F_contig11241.1069.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=142bp
DAAKHYDWVGGVGFSVTLVFRCFGDSLEYSLPPGRSCFFLVAFTFAATLF
GTFRSGFDGGERGISGVYLGIPCAYLTRTIFGLTIPTLLCLCVCLYYFLS
PPEPGVLRPGFVGVRGQWSSDYGMHNYEYKPRPHPPPPPPPA
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mRNA from alignment at Ecto-sp9_F_contig11241:3660..4085-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11241.1069.1 ID=mRNA_Ecto-sp9_F_contig11241.1069.1|Name=mRNA_Ecto-sp9_F_contig11241.1069.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11241:3660..4085- (Ectocarpus species9 EcSCA_722f female)
GACGCGGCGAAGCACTATGACTGGGTGGGTGGCGTGGGTTTCTCTGTTAC
GTTAGTCTTTCGTTGTTTTGGTGATTCACTTGAGTACTCTTTACCTCCAG
GTAGAAGCTGTTTTTTTCTCGTAGCGTTCACATTCGCAGCTACTCTGTTC
GGCACTTTTAGATCTGGTTTTGATGGGGGAGAAAGGGGGATCTCTGGAGT
GTATCTCGGTATCCCATGTGCTTATCTTACTCGAACCATTTTCGGCCTTA
CTATTCCGACACTTCTCTGCTTGTGTGTGTGCCTGTATTATTTTCTGTCT
CCCCCGGAACCCGGCGTGCTCCGTCCCGGCTTTGTTGGGGTGCGAGGTCA
ATGGTCTAGCGACTACGGCATGCACAACTATGAGTACAAACCCCGCCCAC
ACCCCCCCCCCCCCCCCCCCCCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11241:3660..4085-

>mRNA_Ecto-sp9_F_contig11241.1069.1 ID=mRNA_Ecto-sp9_F_contig11241.1069.1|Name=mRNA_Ecto-sp9_F_contig11241.1069.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11241:3660..4085- (Ectocarpus species9 EcSCA_722f female)
GACGCGGCGAAGCACTATGACTGGGTGGGTGGCGTGGGTTTCTCTGTTAC
GTTAGTCTTTCGTTGTTTTGGTGATTCACTTGAGTACTCTTTACCTCCAG
GTAGAAGCTGTTTTTTTCTCGTAGCGTTCACATTCGCAGCTACTCTGTTC
GGCACTTTTAGATCTGGTTTTGATGGGGGAGAAAGGGGGATCTCTGGAGT
GTATCTCGGTATCCCATGTGCTTATCTTACTCGAACCATTTTCGGCCTTA
CTATTCCGACACTTCTCTGCTTGTGTGTGTGCCTGTATTATTTTCTGTCT
CCCCCGGAACCCGGCGTGCTCCGTCCCGGCTTTGTTGGGGTGCGAGGTCA
ATGGTCTAGCGACTACGGCATGCACAACTATGAGTACAAACCCCGCCCAC
ACCCCCCCCCCCCCCCCCCCCCCGCCGACGCGGCGAAGCACTATGACTGG
GTGGGTGGCGTGGGTTTCTCTGTTACGTTAGTCTTTCGTTGTTTTGGTGA
TTCACTTGAGTACTCTTTACCTCCAGGTAGAAGCTGTTTTTTTCTCGTAG
CGTTCACATTCGCAGCTACTCTGTTCGGCACTTTTAGATCTGGTTTTGAT
GGGGGAGAAAGGGGGATCTCTGGAGTGTATCTCGGTATCCCATGTGCTTA
TCTTACTCGAACCATTTTCGGCCTTACTATTCCGACACTTCTCTGCTTGT
GTGTGTGCCTGTATTATTTTCTGTCTCCCCCGGAACCCGGCGTGCTCCGT
CCCGGCTTTGTTGGGGTGCGAGGTCAATGGTCTAGCGACTACGGCATGCA
CAACTATGAGTACAAACCCCGCCCACACCCCCCCCCCCCCCCCCCCCCCG
CC
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