mRNA_Ecto-sp9_F_contig1124.1068.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: tRNA-dihydrouridine (synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI) HSP 1 Score: 459 bits (1180), Expect = 6.210e-161 Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGDTPECAFGSHVRDD 690
YDELTTFVRAVKAAG+DHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHI GT EWG YGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSK+DPDTDDFRDAVDRAMAL PEGVLDEPVGDTPECAFGS VRDD
Sbjct: 150 YDELTTFVRAVKAAGIDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHITGTGEWGEYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFRDAVDRAMALLPEGVLDEPVGDTPECAFGSQVRDD 379
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Dus (domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECZ8_BRELC) HSP 1 Score: 159 bits (402), Expect = 2.210e-43 Identity = 90/218 (41.28%), Postives = 127/218 (58.26%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL FV +AGV H +VHARKCLLKGLST NRTIPPLRYDVV+RL Q+FP+L LNGG+ S+ E + T G+M+GRAAY +PW FR D +F + +P +RREI+ER ++ E+ ++ P + + KPL L +G G + F++E+S A A+ P+ R+ ++ A+ + P+ VLDE V D
Sbjct: 166 YEELHYFVATAASAGVRHFIVHARKCLLKGLSTKENRTIPPLRYDVVYRLKQDFPDLSFTLNGGVQSIQHARELLNTTN--------ADGIMIGRAAYNNPWNFRDADRLIFDADRNPNLSRREIIERYLNYAEELQEKWGSNEPLSGSPYTMATSMLMKPLLSLFNGEFGGKAFKREVS-AQWAKKGPRPE---LREMIENAIKVLPDKVLDERVED 371
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Dus (domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GP67_PHYRM) HSP 1 Score: 158 bits (400), Expect = 2.500e-43 Identity = 91/218 (41.74%), Postives = 127/218 (58.26%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL FV V +AGV H++VHARKC+LKGLST NRTIPPLRYDVV++L Q+FPEL LNGG+ S+ E + T V GVM+GRAAY PW FR D +F + +P +RREI+ER ++ + + P + + + KPL L +G G + F++E+S A A+ P+ R+ ++ AM + P+ VLD V D
Sbjct: 133 YEELHHFVATVASAGVRHIIVHARKCILKGLSTKDNRTIPPLRYDVVYQLKQDFPELSFTLNGGVQSIQHARELLDTTN--------VDGVMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIERYLEYAENLQAKWGSTVPLGDSPYTMATSALMKPLLALFNGEIGGKAFKREIS-AQWAKKGPRPE---LREMIENAMKVLPDEVLDARVED 338
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Dus (domain-containing protein n=25 Tax=Peronosporaceae TaxID=4777 RepID=G4ZWL3_PHYSP) HSP 1 Score: 158 bits (400), Expect = 4.090e-43 Identity = 92/218 (42.20%), Postives = 126/218 (57.80%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL +V +V AGV H++VHARKCLLKGLST NRTIPPLRYDVV+RL Q+FPEL LNGG+ S+ E + T V GVM+GRAAY PW FR D +F + +P +RREI+ R +D + + P + + + KPL L +G G + F++E+S A A+ P+ R+ ++ AM + P+ VLD V D
Sbjct: 161 YEELHHYVSSVTEAGVRHIIVHARKCLLKGLSTKDNRTIPPLRYDVVYRLKQDFPELSFTLNGGVQSIQHARELLDTTN--------VDGVMIGRAAYNTPWNFRDADRLIFNAERNPNLSRREIIARYLDYAEGLQAKWGSTEPLSDSPYTMATSALMKPLLSLFNGEFGGKAFKREIS-AQWAKKGPRPE---LREMIESAMKVLPDEVLDARVED 366
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQW7_PYTOL) HSP 1 Score: 153 bits (386), Expect = 2.710e-41 Identity = 90/218 (41.28%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFG-SSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL F+ V +AGV H +VHARKCLL GLST NRTIPPL+YD V+RL ++FPEL LNGG+ S+ E + T + GVM+GRAAY PW FR D +FG +S+P +RREI+ +D +M + P + + + KPL L SGA G + F+ RA+ AQ + R+ ++ A+A+ P+ VLD V D
Sbjct: 141 YEELHHFITTVASAGVTHFIVHARKCLLNGLSTHENRTIPPLKYDWVYRLKEDFPELFFTLNGGVQSIQHAKELLDTTY--------IDGVMIGRAAYNTPWNFRDADRLIFGEASNPNLSRREIIADYLDYAEDMQTKWGVTEPITDVPYCMPTSALMKPLLALFSGAAGGKAFK----RAISAQFAQRGPKPEIRELIETALAVVPDEVLDLRVED 346
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Dus-domain-containing (protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AFC1_PLAHL) HSP 1 Score: 153 bits (387), Expect = 3.620e-41 Identity = 87/218 (39.91%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL +V V +AGV H++VHARKCLLKGLS NRT+PPLRYDVV+RL Q+FPEL LNGG+ S+ E + T V G+M+GRAAY PW FR D +F + +P +RREI+++ ++ + + P + + KPL L +G G + F++E+S A A+ P+ R+ V+ A+ + P VLD V D
Sbjct: 158 YEELHHYVTMVASAGVRHIIVHARKCLLKGLSPKENRTVPPLRYDVVYRLKQDFPELYFTLNGGVQSIQHARELLNSTN--------VDGIMIGRAAYNSPWNFRDADRLIFNADRNPNLSRREIIQKYLEYAENLQDKWGSSKPLSELPYTMATSALMKPLLTLFNGEIGGKAFKREIS-AQWARKGQRPE---LREMVENALKVIPVEVLDARVED 363
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Dus (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKI6_HYAAE) HSP 1 Score: 150 bits (378), Expect = 5.560e-41 Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL ++ +V AGV H +VHARKC LKGLST NRTIPPLRY+VV++L Q+FPEL LNGG+ S+ E + T V GVM+GRAAY PW FR D +F + +P +RREI+ER + ++ + P + + KPL L +G G + F+ R++ AQ + RD ++ A+ + P+ VLD V D
Sbjct: 46 YEELHHYIASVARAGVRHFIVHARKCFLKGLSTKDNRTIPPLRYEVVYQLKQDFPELLFTLNGGVQSIQHARELLDTTN--------VDGVMIGRAAYNTPWNFRDADRLIFSAERNPNLSRREIIERYLTYAEDLQSKWGSTKPLSESPYTMATSALLKPLLALFNGEIGGKAFK----RSISAQWARKGPRAELRDMIENAVKVLPDEVLDARVED 251
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: tRNA-dihydrouridine (synthase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBW8_PYTIN) HSP 1 Score: 149 bits (376), Expect = 1.100e-39 Identity = 82/218 (37.61%), Postives = 122/218 (55.96%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL F+ V A+GV H VVHARKCLL GLS NRTIPPLRYD V+RL +FP L LNGG+ S+ + + T + GVM+GRAAY+ PW FR D +FG + +P +RREI+ + +D ++ ++ P H+ + KPL L +G G + F++ ++ +S P+ R+ ++ A+ + P+ VLD + D
Sbjct: 153 YEELHHFIDTVAASGVRHFVVHARKCLLNGLSPHENRTIPPLRYDWVYRLKDDFPHLRFTLNGGVQSIQHAKQLLDATR--------LDGVMIGRAAYYTPWNFRDADRLLFGEARNPNLSRREIIAQYLDYAEDLQRKWGATEPISEIPYHMPTSALMKPLLGLFAGESGGKAFKRAIAARFADKSLPKPE---IRELIEEAIKVVPDDVLDLRIED 359
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Z4_GLOUD) HSP 1 Score: 145 bits (367), Expect = 2.190e-38 Identity = 83/218 (38.07%), Postives = 124/218 (56.88%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL FV V ++GV H +VHARKC+LKGLS NRT+PPL+YD V+RL +FP+L LNGG+ S+ E + T + GVM+GRAAY PW FR D +FG+ +P +RREI+E+ +D ++ + P + T+ KPL L +G G + +++E++ A + P+ R+ ++ AM + P+ VLD V D
Sbjct: 156 YEELHHFVTTVASSGVKHFIVHARKCILKGLSPHENRTVPPLKYDFVYRLKADFPDLLFTLNGGVASIQHAKELLDETN--------IDGVMIGRAAYNTPWNFRDADRLIFGAERNPNLSRREIVEKYLDYADDLQAKWGSTVPLGKLNYTMRTSTLMKPLLTLFNGEYGGKAYKREIT-ARWSHKGPRPE---LREMIESAMKVLPDEVLDARVED 361
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Match: Dus (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXI5_9STRA) HSP 1 Score: 145 bits (366), Expect = 3.140e-38 Identity = 81/218 (37.16%), Postives = 121/218 (55.50%), Query Frame = 1
Query: 1 YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLAQEFPELEIVLNGGIDSLGAVNEHIAGTEEWGGYGGGVAGVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKVDPDTDDFRDAVDRAMALFPEGVLDEPVGD 651
Y+EL F+ V + GV H +VHARKC+LKGLS NRT+PPL+Y+VV+RL +FPEL LNGG+ S+ + + T + GVM+GRAAY PW FR D +FG +P +RREI+ + ++ E+ P + T+ KPL L +G GS+ +++E++ + + + R+ V+ A+ L P+ VLD V D
Sbjct: 157 YEELHEFISTVASCGVQHFIVHARKCILKGLSPHENRTVPPLKYNVVYRLKTDFPELRFTLNGGVASIQDAKQLLDETN--------IDGVMIGRAAYNTPWNFRDADRLIFGEERNPNLSRREIVAKYLEYAEELQATWGSTVPIGPLRYTMRTSTLIKPLLALFNGEYGSKAYKREITAQWGKKGPIP----ELREIVEEAVKLIPDEVLDARVED 362 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1124.1068.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1124.1068.1 >prot_Ecto-sp9_F_contig1124.1068.1 ID=prot_Ecto-sp9_F_contig1124.1068.1|Name=mRNA_Ecto-sp9_F_contig1124.1068.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=231bp YDELTTFVRAVKAAGVDHVVVHARKCLLKGLSTSANRTIPPLRYDVVHRLback to top mRNA from alignment at Ecto-sp9_F_contig1124:24934..26562- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1124.1068.1 ID=mRNA_Ecto-sp9_F_contig1124.1068.1|Name=mRNA_Ecto-sp9_F_contig1124.1068.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1629bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1124:24934..26562- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1124:24934..26562- >mRNA_Ecto-sp9_F_contig1124.1068.1 ID=mRNA_Ecto-sp9_F_contig1124.1068.1|Name=mRNA_Ecto-sp9_F_contig1124.1068.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1386bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1124:24934..26562- (Ectocarpus species9 EcSCA_722f female)back to top |