mRNA_Ecto-sp9_F_contig11190.1022.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Tr-type (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J4_9PHAE) HSP 1 Score: 269 bits (688), Expect = 1.410e-83 Identity = 170/181 (93.92%), Postives = 172/181 (95.03%), Query Frame = 3
Query: 384 MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPXXXXXXXXXXXXMQSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXX-----EESKDQSKGAGDGGDAEEMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAASGDAALEVVEGQYPEQAG 911
MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAP XXXXXXXXXXMQSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXX E+SKDQS+GAGDGGDAEEMDENDPLWKATLQVANGDR KALKMLEDPDALMANPEINKIIAEGA SGDAALEVVEGQYPEQAG
Sbjct: 1 MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPTPXXXXXXXXXXMQSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXXXXXXAEDSKDQSEGAGDGGDAEEMDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAVSGDAALEVVEGQYPEQAG 181
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Sup35, (eukaryotic translation termination factor eRF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G008_ECTSI) HSP 1 Score: 268 bits (684), Expect = 2.910e-81 Identity = 171/181 (94.48%), Postives = 173/181 (95.58%), Query Frame = 3
Query: 384 MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPXXXXXXXXXXXXMQSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXX-----EESKDQSKGAGDGGDAEEMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAASGDAALEVVEGQYPEQAG 911
MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPXXXXXXXXXXXX QSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXX EESKDQS+G GDGGDAEEMDENDPLWKATLQVANGDR KALKMLEDPDALMANPE+NKIIAEGAASGDAALEVVEGQYPEQAG
Sbjct: 1 MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPXXXXXXXXXXXXXQSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXXXXXXXEESKDQSEGVGDGGDAEEMDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEVNKIIAEGAASGDAALEVVEGQYPEQAG 181
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Sup35, (eukaryotic translation termination factor eRF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC4_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 7.670e-14 Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query: 432 GGLNPAAASFSFNPAVASWSPGGAAPXXXXXXXXXXXXMQSAQAMAADKVGAVAEGMREVSISSAPXXXXXXXXXXXEESKDQSKGAGDGGDAEE-MDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAASGDAALE 878
G LNP A SF+FNP ++W+P XXXXXX +++AQA A DKV + + I+S AG+G D EE +DE DPLW+ TL++A GDR +A +MLE+PDALMA+PEI +I AA+ DAA +
Sbjct: 8 GALNPNAKSFTFNPNASTWAPXXX--XXXXXXQSQPAAIRTAQAAATDKV---TDQLAAAKIASQ---------------------AGEGSDDEEPIDETDPLWQVTLRIAGGDRARAKRMLENPDALMAHPEIVAVIDATAAADDAAAD 131
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: SUP35 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YS44_SYMMI) HSP 1 Score: 71.6 bits (174), Expect = 5.050e-11 Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query: 711 EEMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAAS 860
EE+DENDPLWKATLQ+A GDR ALK+LEDPDALM PE+ K++ E ++
Sbjct: 54 EEIDENDPLWKATLQIAKGDRKVALKLLEDPDALMQYPEVAKMMEEAEST 103
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P3V7_HETAK) HSP 1 Score: 72.4 bits (176), Expect = 1.750e-10 Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 3
Query: 711 EEMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAASGDAALEVVEG 890
EE+DENDPLWK TLQ+A GDR ALK+LEDPDALM+ PE+ ++ SGD LEV EG
Sbjct: 122 EEIDENDPLWKVTLQLAGGDRAAALKLLEDPDALMSRPEVVAVLG----SGD--LEVTEG 175
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Peptide (chain release factor subunit 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGS5_FISSO) HSP 1 Score: 62.4 bits (150), Expect = 3.270e-7 Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 3
Query: 711 EEMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAASGDAA 872
+E+DE DPLW+A L++++GDR KALK++ +PD L A PEI KI+ E GDAA
Sbjct: 41 DEIDEQDPLWQAVLKISDGDREKALKLINNPDELAAYPEIQKILEE--TGGDAA 92
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPN8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 8.040e-7 Identity = 24/40 (60.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query: 711 EEMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEI 830
+++DENDPLWK TL++A GDR +A+KML DPD+LM +P++
Sbjct: 54 DDIDENDPLWKVTLEIAGGDRDRAIKMLGDPDSLMKHPQV 93
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WBC9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.320e-6 Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query: 714 EMDENDPLWKATLQVANGDRTKALKMLEDPDALMANPEINKIIAEGAASG 863
++DENDPLWK L++A GDR +A++M+ DPD L PE++ ++ + AA G
Sbjct: 45 DIDENDPLWKVVLKIAEGDRDRAMRMIADPDCLAQYPEVDAVLEQMAAEG 94 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11190.1022.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11190.1022.1 >prot_Ecto-sp9_F_contig11190.1022.1 ID=prot_Ecto-sp9_F_contig11190.1022.1|Name=mRNA_Ecto-sp9_F_contig11190.1022.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=176bp MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPAPAAAAAPback to top mRNA from alignment at Ecto-sp9_F_contig11190:877..3705- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11190.1022.1 ID=mRNA_Ecto-sp9_F_contig11190.1022.1|Name=mRNA_Ecto-sp9_F_contig11190.1022.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2829bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11190:877..3705- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11190:877..3705- >mRNA_Ecto-sp9_F_contig11190.1022.1 ID=mRNA_Ecto-sp9_F_contig11190.1022.1|Name=mRNA_Ecto-sp9_F_contig11190.1022.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11190:877..3705- (Ectocarpus species9 EcSCA_722f female)back to top |