mRNA_Ecto-sp9_F_contig1119.1019.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig1119.1019.1
Unique Name	mRNA_Ecto-sp9_F_contig1119.1019.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK3_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.970e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1

Query:    1 LRKLLRNQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELDMQ 195
            LRKLLRNQNRLIDSIRQMDTDRDGV+STAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELDMQ
Sbjct:  734 LRKLLRNQNRLIDSIRQMDTDRDGVVSTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELDMQ 798

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: EF-hand (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN6_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 9.280e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1

Query:    1 LRKLLRNQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELDMQ 195
            LRKLLRNQNRLIDSIRQMDTDRDGV+STAEFRAAIVSMNLGLTDRQVE LIHSIDVDNDGELDMQ
Sbjct:  691 LRKLLRNQNRLIDSIRQMDTDRDGVVSTAEFRAAIVSMNLGLTDRQVENLIHSIDVDNDGELDMQ 755

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: Ef (hand family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZVZ5_STYLE)

HSP 1 Score: 57.0 bits (136), Expect = 7.040e-8
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 1

Query:    1 LRKLLRNQNRLIDSI-RQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELD 189
            LR+++R+ ++ I  I R+ DTD +G IS  EFR AI  +NLGLT R+++KL+  ID ++DG++D
Sbjct: 1404 LRQIMRSSSQSISEIFREFDTDGNGSISEVEFRNAIRKLNLGLTSREIDKLMLRIDSNSDGKID 1467

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.610e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1

Query:    7 KLLRNQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELDMQ 195
            +LL++Q RL+D I  MD DR+G I   E R  + S+ LGL+D +++ L+ S+D D  G +  +
Sbjct:  583 ELLKHQGRLVDQIHAMDKDRNGCIDVDELRTMVASLELGLSDDEMDFLLKSLDTDGSGTMSFE 645

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: EF (hand family protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I929_9SPIT)

HSP 1 Score: 52.8 bits (125), Expect = 2.200e-6
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 1

Query:    1 LRKLLRNQNRLIDSI-RQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELD 189
            +R++++     ID I ++ D+D +G IS  EFR AI  +NLGLT R+++KL+  ID ++DG++D
Sbjct: 1403 IRQIIKTSASSIDQIFQEFDSDGNGTISEIEFRQAIRKLNLGLTSREIDKLMLRIDSNSDGKID 1466

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: Predicted (protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7SIU0_NEMVE)

HSP 1 Score: 50.1 bits (118), Expect = 1.930e-5
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1

Query:   10 LLRNQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELD 189
            L R   R++D  R++D D+   +S  EF   +   ++GLT  +VEK+I S+DVD+DGE+D
Sbjct:  409 LAREHVRVVDLFRRLDKDQSMQVSVREFVEGLRKSDVGLTAFEVEKIIESLDVDDDGEID 468

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: leucine-rich (repeat-containing protein 74B-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AF405)

HSP 1 Score: 49.3 bits (116), Expect = 3.580e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1

Query:   19 NQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELD 189
            N+ RL+D   Q D D  G IS  EF+  +    L +T RQ+++LI  ID++NDGE++
Sbjct:  333 NRLRLVDWFNQFDKDHSGGISRDEFKTGLRETGLVMTQRQLDRLIDFIDINNDGEIE 389

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BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Match: leucine-rich (repeat-containing protein 74A-like isoform X1 n=3 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3DDC9)

HSP 1 Score: 49.3 bits (116), Expect = 3.640e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1

Query:   19 NQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKLIHSIDVDNDGELD 189
            N+ RL+D   Q D D  G IS  EF+  +    L +T RQ+++LI  ID++NDGE++
Sbjct:  601 NRLRLVDWFNQFDKDHSGGISRDEFKTGLRETGLVMTQRQLDRLIDFIDINNDGEIE 657

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1119.1019.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 8


Match Name	E-value	Identity	Description
EF-hand	1.970e-31	98.46	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
EF-hand	9.280e-31	96.92	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Ef	7.040e-8	46.88	hand family protein n=1 Tax=Stylonychia lemnae Tax...	[more]
Uncharacterized	4.610e-7	39.68	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
EF	2.200e-6	42.19	hand family protein n=1 Tax=Oxytricha trifallax Ta...	[more]
Predicted	1.930e-5	41.67	protein n=3 Tax=Nematostella vectensis TaxID=45351...	[more]
leucine-rich	3.580e-5	42.11	repeat-containing protein 74B-like n=1 Tax=Acropor...	[more]
leucine-rich	3.640e-5	42.11	repeat-containing protein 74A-like isoform X1 n=3 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1119	contig	Ecto-sp9_F_contig1119:843..1037 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	124.8
Seed ortholog evalue	1.5e-26
Seed eggNOG ortholog	2880.D7FPK3
EggNOG OGs	2CNRM@1,2QXQQ@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	195
Cds size	195
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928360.2639868-CDS-Ecto-sp9_F_contig1119:842..1037	1622928360.2639868-CDS-Ecto-sp9_F_contig1119:842..1037	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1119 843..1037 -
1692277845.5120919-CDS-Ecto-sp9_F_contig1119:842..1037	1692277845.5120919-CDS-Ecto-sp9_F_contig1119:842..1037	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig1119 843..1037 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1119.1019.1	prot_Ecto-sp9_F_contig1119.1019.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig1119 843..1037 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig1119:843..1037-
coding sequence from alignment at Ecto-sp9_F_contig1119:843..1037-

protein sequence of mRNA_Ecto-sp9_F_contig1119.1019.1

>prot_Ecto-sp9_F_contig1119.1019.1 ID=prot_Ecto-sp9_F_contig1119.1019.1|Name=mRNA_Ecto-sp9_F_contig1119.1019.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=65bp
LRKLLRNQNRLIDSIRQMDTDRDGVISTAEFRAAIVSMNLGLTDRQVEKL
IHSIDVDNDGELDMQ

mRNA from alignment at Ecto-sp9_F_contig1119:843..1037-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig1119.1019.1 ID=mRNA_Ecto-sp9_F_contig1119.1019.1|Name=mRNA_Ecto-sp9_F_contig1119.1019.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1119:843..1037- (Ectocarpus species9 EcSCA_722f female)
TTGCGAAAACTGCTCAGAAACCAAAACCGGCTGATCGACAGCATACGCCA
GATGGATACCGACAGGGACGGCGTTATCTCCACGGCGGAGTTCCGAGCCG
CGATCGTCTCTATGAACCTCGGCCTCACTGATCGTCAAGTGGAGAAGCTT
ATCCACTCTATCGACGTGGACAACGACGGGGAGCTAGACATGCAG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1119:843..1037-

>mRNA_Ecto-sp9_F_contig1119.1019.1 ID=mRNA_Ecto-sp9_F_contig1119.1019.1|Name=mRNA_Ecto-sp9_F_contig1119.1019.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1119:843..1037- (Ectocarpus species9 EcSCA_722f female)
TTGCGAAAACTGCTCAGAAACCAAAACCGGCTGATCGACAGCATACGCCA
GATGGATACCGACAGGGACGGCGTTATCTCCACGGCGGAGTTCCGAGCCG
CGATCGTCTCTATGAACCTCGGCCTCACTGATCGTCAAGTGGAGAAGCTT
ATCCACTCTATCGACGTGGACAACGACGGGGAGCTAGACATGCAGTTGCG
AAAACTGCTCAGAAACCAAAACCGGCTGATCGACAGCATACGCCAGATGG
ATACCGACAGGGACGGCGTTATCTCCACGGCGGAGTTCCGAGCCGCGATC
GTCTCTATGAACCTCGGCCTCACTGATCGTCAAGTGGAGAAGCTTATCCA
CTCTATCGACGTGGACAACGACGGGGAGCTAGACATGCAG