mRNA_Ecto-sp9_F_contig11113.965.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: USP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE) HSP 1 Score: 245 bits (625), Expect = 5.710e-73 Identity = 115/119 (96.64%), Postives = 119/119 (100.00%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 357
+QEDAHEFLRHLLDKMVDCYLKR+GVKSSAP+RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSI+VALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK
Sbjct: 368 RQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 486
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.690e-51 Identity = 88/127 (69.29%), Postives = 104/127 (81.89%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 357
+QEDAHEFLRHL+DKM YL+RRGV APNRLAETTPI+R+FGGYLRS+LKC++CG CSDTFDPFMDL+M++ S GV RS+ ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct: 237 RQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 363
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE) HSP 1 Score: 177 bits (449), Expect = 2.500e-49 Identity = 86/126 (68.25%), Postives = 101/126 (80.16%), Query Frame = 1
Query: 4 QEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 357
QEDAHE LRHL+DKM YL+RRGV A NRL ETTPI+R+FGGYLRS+L+C+KCG CSDTFDPFMDL+M++ SRGV RS+ ALRRF A E LG+GNEW+CGGC K V+AEK+LSVFK
Sbjct: 299 QEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 424
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.630e-42 Identity = 66/117 (56.41%), Postives = 92/117 (78.63%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSV 351
+QEDAHEFLR L+D M + L+R GVK++AP+RL ETT INR+FGGYLR++++CTKC +CS+T++ +MDLS+D+ + S++ AL+RF A E L S N WRCGGCK+ V A K L++
Sbjct: 98 RQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQAVETLDSSNRWRCGGCKQKVCARKQLTI 214
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC) HSP 1 Score: 138 bits (348), Expect = 3.380e-36 Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 348
+QEDAHEFLRHLLD + L+ VKS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A E L N WRC C + V A+K LS
Sbjct: 251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.460e-35 Identity = 65/116 (56.03%), Postives = 85/116 (73.28%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 348
+QEDAHEFLRHLLD + L+ VKS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A E L N WRC C + V A+K LS
Sbjct: 251 RQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.720e-35 Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLS 348
+QEDAHEFLRHLLD + + L+ VKS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A E L N W+C C + V A+K LS
Sbjct: 251 RQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWKCPACSQLVCAQKRLS 366
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUI1_HETAK) HSP 1 Score: 127 bits (319), Expect = 4.880e-35 Identity = 63/122 (51.64%), Postives = 86/122 (70.49%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSA--PN--RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVF 354
+QEDA EFL HLLD MV L+R VK +A PN R++ETT I+RIFGGYLR+++KC +CG+CS+TF+ MDLS++L+ G +S+ A F E+L S N WRC C+K V A K L+++
Sbjct: 16 RQEDAQEFLCHLLDAMVKTELRRARVKENATGPNGERISETTAIHRIFGGYLRNQVKCPECGYCSETFNQTMDLSLELTGGTQSLQQAYSHFSRREKLDSANRWRCDECRKQVCATKQLTLY 137
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.160e-34 Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 1
Query: 1 KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFKV 360
+QEDAHEFLRHLLD + L R G+K + R ET+ I RIFGGYLRS+LKC+ C C T+D F+DLS++++ + S+ AL+ F A E L N W+CGGC K V+A K +++FK
Sbjct: 130 RQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQLKCSNCAFCLHTYDAFLDLSLEITGKISSLPSALQMFQAAEVLDKHNRWKCGGCGKHVRARKQITIFKA 249
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Match: USP (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJQ6_9ARCH) HSP 1 Score: 125 bits (315), Expect = 5.100e-34 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 1
Query: 4 QEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFKV 360
QED+HEFLR LL+KM L+ GVK AP RL ETT I+++FGGY ++L C C + S+ F+PF+DL +++ G+ S+D ALR F E L + N W+C C+KPV A+K +++ KV
Sbjct: 3 QEDSHEFLRCLLEKMHRASLRVAGVKEGAPGRLDETTIIHKLFGGYFCNQLHCPNCKYDSNNFEPFLDLCLEVGNGINSVDRALRHFATVETLDADNRWKCPRCEKPVCAKKQMTIRKV 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11113.965.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11113.965.1 >prot_Ecto-sp9_F_contig11113.965.1 ID=prot_Ecto-sp9_F_contig11113.965.1|Name=mRNA_Ecto-sp9_F_contig11113.965.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=121bp KQEDAHEFLRHLLDKMVDCYLKRRGVKSSAPNRLAETTPINRIFGGYLRSback to top mRNA from alignment at Ecto-sp9_F_contig11113:2554..3855+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11113.965.1 ID=mRNA_Ecto-sp9_F_contig11113.965.1|Name=mRNA_Ecto-sp9_F_contig11113.965.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1302bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11113:2554..3855+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11113:2554..3855+ >mRNA_Ecto-sp9_F_contig11113.965.1 ID=mRNA_Ecto-sp9_F_contig11113.965.1|Name=mRNA_Ecto-sp9_F_contig11113.965.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11113:2554..3855+ (Ectocarpus species9 EcSCA_722f female)back to top |