mRNA_Ecto-sp9_F_contig11103.960.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11103.960.1
Unique NamemRNA_Ecto-sp9_F_contig11103.960.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11103.960.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11103contigEcto-sp9_F_contig11103:99..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size509
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928350.9821763-CDS-Ecto-sp9_F_contig11103:98..5541622928350.9821763-CDS-Ecto-sp9_F_contig11103:98..554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11103 99..554 +
1692277842.0420053-CDS-Ecto-sp9_F_contig11103:98..5541692277842.0420053-CDS-Ecto-sp9_F_contig11103:98..554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11103 99..554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928350.995253-UTR-Ecto-sp9_F_contig11103:554..6061622928350.995253-UTR-Ecto-sp9_F_contig11103:554..606Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11103 555..606 +
1692277842.0511656-UTR-Ecto-sp9_F_contig11103:554..6061692277842.0511656-UTR-Ecto-sp9_F_contig11103:554..606Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11103 555..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11103.960.1prot_Ecto-sp9_F_contig11103.960.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11103 99..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11103.960.1

>prot_Ecto-sp9_F_contig11103.960.1 ID=prot_Ecto-sp9_F_contig11103.960.1|Name=mRNA_Ecto-sp9_F_contig11103.960.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=152bp
PYSSFPSDYAYPPLHRRLSIEERRPFARARAWLTTVHTGLIVIPPNAIKQ
QQFIHHVKVCRTRRQRQGSGGGATGVNRSGSRGRPPMPPYHAGAVLRPQN
RPSRVDPLCLHANICRSHLEPLCLHANNRFLCRSLPSPPFSPSPGENRDG
P*
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mRNA from alignment at Ecto-sp9_F_contig11103:99..606+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11103.960.1 ID=mRNA_Ecto-sp9_F_contig11103.960.1|Name=mRNA_Ecto-sp9_F_contig11103.960.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11103:99..606+ (Ectocarpus species9 EcSCA_722f female)
CCGTATTCCTCCTTCCCCTCCGACTACGCTTACCCTCCGCTGCATCGCCG
ACTTTCGATTGAGGAAAGGCGTCCGTTTGCTCGTGCGCGTGCATGGCTTA
CTACCGTGCACACGGGATTGATTGTGATTCCCCCGAATGCTATCAAACAG
CAGCAGTTTATACATCACGTCAAAGTGTGTCGCACAAGACGGCAACGACA
GGGTAGTGGTGGTGGTGCCACAGGTGTCAACAGAAGCGGCTCGCGGGGAA
GACCTCCGATGCCGCCCTATCATGCGGGCGCAGTTCTTAGGCCGCAAAAT
CGTCCGTCGCGCGTGGATCCTCTCTGCCTTCATGCAAACATTTGCCGGTC
GCACTTGGAACCTCTCTGCCTCCATGCGAACAATCGCTTCTTGTGTCGCT
CGCTGCCGTCTCCACCTTTCTCGCCGTCTCCAGGAGAGAACCGGGACGGC
CCTTGACTGAGAGCTCGCAACGGCGCCTGGAAGCCAAAACAGCGAGAATA
ACGGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11103:99..606+

>mRNA_Ecto-sp9_F_contig11103.960.1 ID=mRNA_Ecto-sp9_F_contig11103.960.1|Name=mRNA_Ecto-sp9_F_contig11103.960.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11103:99..606+ (Ectocarpus species9 EcSCA_722f female)
CCGTATTCCTCCTTCCCCTCCGACTACGCTTACCCTCCGCTGCATCGCCG
ACTTTCGATTGAGGAAAGGCGTCCGTTTGCTCGTGCGCGTGCATGGCTTA
CTACCGTGCACACGGGATTGATTGTGATTCCCCCGAATGCTATCAAACAG
CAGCAGTTTATACATCACGTCAAAGTGTGTCGCACAAGACGGCAACGACA
GGGTAGTGGTGGTGGTGCCACAGGTGTCAACAGAAGCGGCTCGCGGGGAA
GACCTCCGATGCCGCCCTATCATGCGGGCGCAGTTCTTAGGCCGCAAAAT
CGTCCGTCGCGCGTGGATCCTCTCTGCCTTCATGCAAACATTTGCCGGTC
GCACTTGGAACCTCTCTGCCTCCATGCGAACAATCGCTTCTTGTGTCGCT
CGCTGCCGTCTCCACCTTTCTCGCCGTCTCCAGGAGAGAACCGGGACGGC
CCTTGACCGTATTCCTCCTTCCCCTCCGACTACGCTTACCCTCCGCTGCA
TCGCCGACTTTCGATTGAGGAAAGGCGTCCGTTTGCTCGTGCGCGTGCAT
GGCTTACTACCGTGCACACGGGATTGATTGTGATTCCCCCGAATGCTATC
AAACAGCAGCAGTTTATACATCACGTCAAAGTGTGTCGCACAAGACGGCA
ACGACAGGGTAGTGGTGGTGGTGCCACAGGTGTCAACAGAAGCGGCTCGC
GGGGAAGACCTCCGATGCCGCCCTATCATGCGGGCGCAGTTCTTAGGCCG
CAAAATCGTCCGTCGCGCGTGGATCCTCTCTGCCTTCATGCAAACATTTG
CCGGTCGCACTTGGAACCTCTCTGCCTCCATGCGAACAATCGCTTCTTGT
GTCGCTCGCTGCCGTCTCCACCTTTCTCGCCGTCTCCAGGAGAGAACCGG
GACGGCCCTTGA
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