mRNA_Ecto-sp9_F_contig1109.945.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1109.945.1
Unique NamemRNA_Ecto-sp9_F_contig1109.945.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1109.945.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1109contigEcto-sp9_F_contig1109:15414..16403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size643
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1109.945.1prot_Ecto-sp9_F_contig1109.945.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1109 15452..16197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.7675605-UTR-Ecto-sp9_F_contig1109:15413..154511622928348.7675605-UTR-Ecto-sp9_F_contig1109:15413..15451Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1109 15414..15451 -
1692277840.9804108-UTR-Ecto-sp9_F_contig1109:15413..154511692277840.9804108-UTR-Ecto-sp9_F_contig1109:15413..15451Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1109 15414..15451 -
1622928348.8064196-UTR-Ecto-sp9_F_contig1109:16197..164031622928348.8064196-UTR-Ecto-sp9_F_contig1109:16197..16403Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1109 16198..16403 -
1692277841.0127797-UTR-Ecto-sp9_F_contig1109:16197..164031692277841.0127797-UTR-Ecto-sp9_F_contig1109:16197..16403Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1109 16198..16403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.7804258-CDS-Ecto-sp9_F_contig1109:15451..156491622928348.7804258-CDS-Ecto-sp9_F_contig1109:15451..15649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 15452..15649 -
1692277840.990857-CDS-Ecto-sp9_F_contig1109:15451..156491692277840.990857-CDS-Ecto-sp9_F_contig1109:15451..15649Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 15452..15649 -
1622928348.791319-CDS-Ecto-sp9_F_contig1109:15996..161971622928348.791319-CDS-Ecto-sp9_F_contig1109:15996..16197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 15997..16197 -
1692277841.000476-CDS-Ecto-sp9_F_contig1109:15996..161971692277841.000476-CDS-Ecto-sp9_F_contig1109:15996..16197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 15997..16197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1109.945.1

>prot_Ecto-sp9_F_contig1109.945.1 ID=prot_Ecto-sp9_F_contig1109.945.1|Name=mRNA_Ecto-sp9_F_contig1109.945.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=133bp
MTATFGGMDIMSADGLTTLGGVGSDGRVSVPPPQVLVGRMGQGEAAGSRQ
PQPPQPQAATLFFQQQHLQHLDNFLTDAQQQQQQPRLATQVSTPEFRNMS
VTVPFDGSIDGSEGGGGGGGRGAGSFGRVATL*
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mRNA from alignment at Ecto-sp9_F_contig1109:15414..16403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1109.945.1 ID=mRNA_Ecto-sp9_F_contig1109.945.1|Name=mRNA_Ecto-sp9_F_contig1109.945.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:15414..16403- (Ectocarpus species9 EcSCA_722f female)
TGTTGCTCGGCTCGCCGTCCTTGTCGTGGCCGCAACAACAGCAACACCAA
CAGCCTGCACTAGACCCGCTTCGAACAGAGCAGCAGCTTCTTGCGGATTC
TCCCGTATTGGCGGGTGTGCCTGTGCTAGGGCTGGACCAACGTCAGCACC
TGGACGGCATCGGGCAGAGCAGGGACGGGGGTTATGGCGGTTCGTTTTCG
ACGGGGATGACAGCGACGTTTGGTGGGATGGATATAATGAGCGCGGACGG
GCTGACGACGTTGGGTGGAGTTGGTAGCGATGGAAGAGTTTCCGTGCCCC
CGCCACAGGTGCTTGTGGGGCGTATGGGTCAAGGGGAAGCGGCCGGGAGT
CGGCAGCCGCAGCCGCCGCAGCCGCAGGCAGCGACCCTGTTCTTTCAGCA
GCAGCACGTGAGGATTCGGTTGTTGGGTGATACGGATATGTAGTCTTGTA
CCATATGGTTCTCGACTCATATAGGTTTAAGCTGTTCGACTATTTTTCAT
AGCGGTGCAACACGTTATTACCACACACCCTTGGGGTATCGCCTACCTCA
TCGGCGAAGCCCCGTTCCAGTGACATTCTGGGGATGCGATGCGAGGGTCC
AGCAACGACGCACGACAGCCAGTGTGTAACTTCTCCTCCATCTGTTGTTG
TGGGTGCAACGTTGTCTTTTGCTCGGTTTCCCGTGCAAGCTTTTTGCGAT
TCTGACTACACAATATTTGATGTCTTATGTCTGCCGTTGTCTCCTTTCGC
GCAGCTTCAGCATCTCGACAACTTCTTGACGGATGCTCAGCAGCAGCAGC
AGCAGCCCCGCCTAGCAACGCAGGTGTCAACACCGGAGTTCCGCAACATG
AGCGTAACGGTTCCATTCGATGGCAGCATCGACGGTAGCGAAGGAGGCGG
CGGCGGCGGCGGTCGTGGAGCAGGCAGTTTTGGGAGAGTTGCGACTTTGT
AGCATGGCTATGTGAGTATTTCTGATGGCAGCGGGGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1109:15414..16403-

>mRNA_Ecto-sp9_F_contig1109.945.1 ID=mRNA_Ecto-sp9_F_contig1109.945.1|Name=mRNA_Ecto-sp9_F_contig1109.945.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:15414..16403- (Ectocarpus species9 EcSCA_722f female)
ATGACAGCGACGTTTGGTGGGATGGATATAATGAGCGCGGACGGGCTGAC
GACGTTGGGTGGAGTTGGTAGCGATGGAAGAGTTTCCGTGCCCCCGCCAC
AGGTGCTTGTGGGGCGTATGGGTCAAGGGGAAGCGGCCGGGAGTCGGCAG
CCGCAGCCGCCGCAGCCGCAGGCAGCGACCCTGTTCTTTCAGCAGCAGCA
CATGACAGCGACGTTTGGTGGGATGGATATAATGAGCGCGGACGGGCTGA
CGACGTTGGGTGGAGTTGGTAGCGATGGAAGAGTTTCCGTGCCCCCGCCA
CAGGTGCTTGTGGGGCGTATGGGTCAAGGGGAAGCGGCCGGGAGTCGGCA
GCCGCAGCCGCCGCAGCCGCAGGCAGCGACCCTGTTCTTTCAGCAGCAGC
ACCTTCAGCATCTCGACAACTTCTTGACGGATGCTCAGCAGCAGCAGCAG
CAGCCCCGCCTAGCAACGCAGGTGTCAACACCGGAGTTCCGCAACATGAG
CGTAACGGTTCCATTCGATGGCAGCATCGACGGTAGCGAAGGAGGCGGCG
GCGGCGGCGGTCGTGGAGCAGGCAGTTTTGGGAGAGTTGCGACTTTGTAG
CTTCAGCATCTCGACAACTTCTTGACGGATGCTCAGCAGCAGCAGCAGCA
GCCCCGCCTAGCAACGCAGGTGTCAACACCGGAGTTCCGCAACATGAGCG
TAACGGTTCCATTCGATGGCAGCATCGACGGTAGCGAAGGAGGCGGCGGC
GGCGGCGGTCGTGGAGCAGGCAGTTTTGGGAGAGTTGCGACTTTGTAG
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