mRNA_Ecto-sp9_F_contig1109.944.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1109.944.1
Unique NamemRNA_Ecto-sp9_F_contig1109.944.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1109.944.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1109contigEcto-sp9_F_contig1109:13449..13778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000090.1
Exons2
Model size178
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928348.9683158-CDS-Ecto-sp9_F_contig1109:13448..134971622928348.9683158-CDS-Ecto-sp9_F_contig1109:13448..13497Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 13449..13497 +
1692277841.09377-CDS-Ecto-sp9_F_contig1109:13448..134971692277841.09377-CDS-Ecto-sp9_F_contig1109:13448..13497Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 13449..13497 +
1622928348.9924808-CDS-Ecto-sp9_F_contig1109:13650..137781622928348.9924808-CDS-Ecto-sp9_F_contig1109:13650..13778Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 13651..13778 +
1692277841.1034138-CDS-Ecto-sp9_F_contig1109:13650..137781692277841.1034138-CDS-Ecto-sp9_F_contig1109:13650..13778Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1109 13651..13778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1109.944.1prot_Ecto-sp9_F_contig1109.944.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1109 13449..13778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1109.944.1

>prot_Ecto-sp9_F_contig1109.944.1 ID=prot_Ecto-sp9_F_contig1109.944.1|Name=mRNA_Ecto-sp9_F_contig1109.944.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=59bp
MGGFHEMERKEASRRRMKCTVLLSRVHEDMSGGGFPRGTNMHHRRRTSQR
LWARASYVR
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mRNA from alignment at Ecto-sp9_F_contig1109:13449..13778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1109.944.1 ID=mRNA_Ecto-sp9_F_contig1109.944.1|Name=mRNA_Ecto-sp9_F_contig1109.944.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:13449..13778+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGGGCTTTCATGAGATGGAGAGGAAGGAAGCATCGAGAAGAAGGAG
TGAGAAACCATCGCAAAAAGGCACACACGATCTTGTTGTGCACTAAAACG
CACGGTTCACGCCGGCACCGGAGCGAAACTTCCTCAGACAGCCTTTTGTA
AGTGTACGTTGTTGCCTTTCCTCTCCTTGCACCTCATCTCCTTGTCATGT
AGTGAAATGTACCGTTCTTTTGTCTCGGGTACACGAAGACATGTCGGGCG
GCGGGTTCCCAAGAGGAACCAACATGCACCACCGTCGCCGAACTAGCCAG
CGCCTTTGGGCAAGGGCATCATACGTGCGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1109:13449..13778+

>mRNA_Ecto-sp9_F_contig1109.944.1 ID=mRNA_Ecto-sp9_F_contig1109.944.1|Name=mRNA_Ecto-sp9_F_contig1109.944.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1109:13449..13778+ (Ectocarpus species9 EcSCA_722f female)
ATGGGGGGCTTTCATGAGATGGAGAGGAAGGAAGCATCGAGAAGAAGGAA
TGGGGGGCTTTCATGAGATGGAGAGGAAGGAAGCATCGAGAAGAAGGATG
AAATGTACCGTTCTTTTGTCTCGGGTACACGAAGACATGTCGGGCGGCGG
GTTCCCAAGAGGAACCAACATGCACCACCGTCGCCGAACTAGCCAGCGCC
TTTGGGCAAGGGCATCATACGTGCGTTGAAATGTACCGTTCTTTTGTCTC
GGGTACACGAAGACATGTCGGGCGGCGGGTTCCCAAGAGGAACCAACATG
CACCACCGTCGCCGAACTAGCCAGCGCCTTTGGGCAAGGGCATCATACGT
GCGT
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