mRNA_Ecto-sp9_F_contig11069.936.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11069.936.1
Unique NamemRNA_Ecto-sp9_F_contig11069.936.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11069.936.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG76_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 3.730e-158
Identity = 285/304 (93.75%), Postives = 288/304 (94.74%), Query Frame = 1 
Query:   61 MSSPSESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXXX--TAARSAYSSGGTVQSGRHGTSPVVREVDVYDDVSSEASMSSAGTEAASRVQSEMTGTYDHDTAAGGSTASFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQGYGSSRSSIVSRVAGADSEMGSHRLVPPQDSWQNSPGPGVGASAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRAVGGVGRGVVAEFGFRACVLALQSKESSISVSTAGTCREKK----NTRKSA 954
            MSSPSESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXXX  TAARSAYSSGGTVQSGRHGTSPVVREVDVYDDVSSEASMSSAGTEAASRVQSE+TGTYDHDTAAGGST SFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQ YGSSRSSIVSRVAGA+SEMGSHRLVPPQDSWQNSPGPG GA AGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDR   GV  GVVAEFGFRACVLALQS+ESSISVSTAGTCRE K    NTRKSA
Sbjct:   28 MSSPSESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQSGRHGTSPVVREVDVYDDVSSEASMSSAGTEAASRVQSEVTGTYDHDTAAGGSTTSFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQAYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGALAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRGRSGVRGGVVAEFGFRACVLALQSRESSISVSTAGTCREGKKKTENTRKSA 331
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BLAST of mRNA_Ecto-sp9_F_contig11069.936.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 3.510e-110
Identity = 229/249 (91.97%), Postives = 230/249 (92.37%), Query Frame = 1 
Query:   73 SESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQSGRHGTSPVVREVDVYDDVSSEASMSSAGTEAASRVQSEMTGT--YDHDTAAGGSTASFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQGYGSSRSSIVSRVAGADSEMGSHRLVPPQDSWQNSPGPGVGASAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDR 813
            SESDRSSAWNDTDAQ XXXXXXXXXXXXXXXXXXXXXXX   TAARSAYSSGGTVQSGRHGTSPVVREVDVYD VSSEASMSSAGTEAASRVQSEMT T  YDHDTAAGGSTASFQ GGGDSGR HRRPG G    PSP Q MLGYQQGYGSSRSSIVSRVAGA+SEMGSHRLVPPQDSWQNSPGPG GASA GGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDR
Sbjct: 2278 SESDRSSAWNDTDAQSXXXXXXXXXXXXXXXXXXXXXXX---TAARSAYSSGGTVQSGRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMTSTSTYDHDTAAGGSTASFQGGGGDSGRAHRRPGPGVRVPPSPSQPMLGYQQGYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAEGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDR 2523
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11069.936.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.730e-15893.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.510e-11091.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11069contigEcto-sp9_F_contig11069:1545..2956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004020.1
Exons3
Model size985
Cds size984
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11069.936.1prot_Ecto-sp9_F_contig11069.936.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11069 1545..2955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928347.9413457-CDS-Ecto-sp9_F_contig11069:1544..23581622928347.9413457-CDS-Ecto-sp9_F_contig11069:1544..2358Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11069 1545..2358 +
1692277840.649239-CDS-Ecto-sp9_F_contig11069:1544..23581692277840.649239-CDS-Ecto-sp9_F_contig11069:1544..2358Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11069 1545..2358 +
1622928347.9624507-CDS-Ecto-sp9_F_contig11069:2630..26411622928347.9624507-CDS-Ecto-sp9_F_contig11069:2630..2641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11069 2631..2641 +
1692277840.657975-CDS-Ecto-sp9_F_contig11069:2630..26411692277840.657975-CDS-Ecto-sp9_F_contig11069:2630..2641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11069 2631..2641 +
1622928347.9799283-CDS-Ecto-sp9_F_contig11069:2796..29551622928347.9799283-CDS-Ecto-sp9_F_contig11069:2796..2955Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11069 2797..2955 +
1692277840.6700034-CDS-Ecto-sp9_F_contig11069:2796..29551692277840.6700034-CDS-Ecto-sp9_F_contig11069:2796..2955Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11069 2797..2955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11069.936.1

>prot_Ecto-sp9_F_contig11069.936.1 ID=prot_Ecto-sp9_F_contig11069.936.1|Name=mRNA_Ecto-sp9_F_contig11069.936.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=328bp
SSDVDDDDGGGGGFGARGAAMSSPSESDRSSAWNDTDAQSSNPPTFGGGS
GGGGGGGGNYAAAQFTTAARSAYSSGGTVQSGRHGTSPVVREVDVYDDVS
SEASMSSAGTEAASRVQSEMTGTYDHDTAAGGSTASFQAGGGDSGRGHRR
PGSGASGAPSPGQRMLGYQQGYGSSRSSIVSRVAGADSEMGSHRLVPPQD
SWQNSPGPGVGASAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDF
GRVWLADRAHARQFDDADEDRAVGGVGRGVVAEFGFRACVLALQSKESSI
SVSTAGTCREKKNTRKSATLNRLGTRRV
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mRNA from alignment at Ecto-sp9_F_contig11069:1545..2956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11069.936.1 ID=mRNA_Ecto-sp9_F_contig11069.936.1|Name=mRNA_Ecto-sp9_F_contig11069.936.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1412bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11069:1545..2956+ (Ectocarpus species9 EcSCA_722f female)
AGCTCGGATGTCGACGACGACGATGGCGGCGGCGGCGGCTTCGGCGCAAG
GGGCGCCGCGATGTCGTCCCCGTCGGAGAGCGATAGGTCCTCGGCGTGGA
ACGACACCGACGCGCAGTCGTCGAACCCCCCGACCTTCGGCGGCGGCAGC
GGCGGCGGCGGCGGTGGCGGTGGTAACTACGCGGCGGCGCAGTTCACGAC
CGCCGCGAGGTCGGCGTACTCGTCCGGGGGCACCGTGCAATCGGGCAGAC
ACGGCACTTCCCCCGTGGTGAGGGAGGTGGACGTGTACGACGACGTGTCG
TCGGAGGCGTCCATGTCGTCCGCGGGCACGGAGGCCGCGTCGAGGGTGCA
GAGCGAGATGACGGGCACGTACGACCACGACACGGCGGCCGGCGGGAGCA
CGGCCTCCTTCCAGGCCGGCGGCGGCGACAGCGGCCGCGGCCATCGCCGC
CCCGGGTCCGGCGCTAGCGGCGCCCCCTCCCCGGGCCAGCGCATGCTGGG
CTACCAGCAAGGGTACGGCTCCTCGAGGTCCTCGATAGTGTCGAGGGTGG
CCGGGGCGGATTCGGAGATGGGGTCTCACCGTCTGGTCCCCCCGCAGGAC
AGCTGGCAGAACTCGCCGGGGCCCGGGGTGGGGGCGTCGGCGGGGGGTGG
GATCGAGCGGGTGCTGTCCGGGGAGACGACGGACTCCAGCATCCTGGAGC
AGCAGGCGAGGGACAGACACGGCAGCGGCCAGCAGGAGGACGGGGACTTC
GGTAGGGTGTGGCTGGCGGATCGAGCGCACGCGAGACAGTTCGATGATGC
AGACGAGGATCGGGGTTAAAAGGATTTTGCAGTAGTAGGATTTTTTTTCT
CTCGTTTCCATTCCTGCCTTTTTTCGGGCTTGAACTTGGTTTTCGGTACT
TTTTTTTTATGGTAGTTTAAGACACGCGAACAGAAGAACAAAGCTGGCCG
GAAGGTGCCAGGCAGTGATCGTGTGGTGACGGTGAGGAAGTTTGCGGAGC
GCGTGCTTTCAGTTCGCGGCTTTATGAAGTAGCGTAGCGGGCTGATGTTT
TCAATGTTGCGGCCTTAGTTCCCGCTGAGAAAATAGCCGTCGGTGGTGTT
CTCCTCTGGTTTGCTCTGCCGTTCTACCTGCAAGAGGCGGGTTGAACAGG
GGCGTTTGGGAGAGGACGAGTAGTCAGTCCTTTGGTGTCAGGCCGTTATA
ATCATGGCCTCGTTTTGCTTGGTGTTGTATTTGTCTTCTTGTCCGTGTTG
AGGTCGGTCGGGGGGTGGTTGCAGAGTTCGGTTTCCGAGCGTGCGTGCTT
GCGTTACAATCAAAAGAGTCGTCCATTAGCGTATCGACAGCAGGCACGTG
CCGAGAAAAAAAAAACACGAGGAAGTCGGCGACACTAAACCGTCTGGGCA
CTCGTCGCGTTT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11069:1545..2956+

>mRNA_Ecto-sp9_F_contig11069.936.1 ID=mRNA_Ecto-sp9_F_contig11069.936.1|Name=mRNA_Ecto-sp9_F_contig11069.936.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1968bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11069:1545..2956+ (Ectocarpus species9 EcSCA_722f female)
AGCTCGGATGTCGACGACGACGATGGCGGCGGCGGCGGCTTCGGCGCAAG
GGGCGCCGCGATGTCGTCCCCGTCGGAGAGCGATAGGTCCTCGGCGTGGA
ACGACACCGACGCGCAGTCGTCGAACCCCCCGACCTTCGGCGGCGGCAGC
GGCGGCGGCGGCGGTGGCGGTGGTAACTACGCGGCGGCGCAGTTCACGAC
CGCCGCGAGGTCGGCGTACTCGTCCGGGGGCACCGTGCAATCGGGCAGAC
ACGGCACTTCCCCCGTGGTGAGGGAGGTGGACGTGTACGACGACGTGTCG
TCGGAGGCGTCCATGTCGTCCGCGGGCACGGAGGCCGCGTCGAGGGTGCA
GAGCGAGATGACGGGCACGTACGACCACGACACGGCGGCCGGCGGGAGCA
CGGCCTCCTTCCAGGCCGGCGGCGGCGACAGCGGCCGCGGCCATCGCCGC
CCCGGGTCCGGCGCTAGCGGCGCCCCCTCCCCGGGCCAGCGCATGCTGGG
CTACCAGCAAGGGTACGGCTCCTCGAGGTCCTCGATAGTGTCGAGGGTGG
CCGGGGCGGATTCGGAGATGGGGTCTCACCGTCTGGTCCCCCCGCAGGAC
AGCTGGCAGAACTCGCCGGGGCCCGGGGTGGGGGCGTCGGCGGGGGGTGG
GATCGAGCGGGTGCTGTCCGGGGAGACGACGGACTCCAGCATCCTGGAGC
AGCAGGCGAGGGACAGACACGGCAGCGGCCAGCAGGAGGACGGGGACTTC
GGTAGGGTGTGGCTGGCGGATCGAGCGCACGCGAGACAGTTCGATGATGC
AGACGAGGATCGGGAGCTCGGATGTCGACGACGACGATGGCGGCGGCGGC
GGCTTCGGCGCAAGGGGCGCCGCGATGTCGTCCCCGTCGGAGAGCGATAG
GTCCTCGGCGTGGAACGACACCGACGCGCAGTCGTCGAACCCCCCGACCT
TCGGCGGCGGCAGCGGCGGCGGCGGCGGTGGCGGTGGTAACTACGCGGCG
GCGCAGTTCACGACCGCCGCGAGGTCGGCGTACTCGTCCGGGGGCACCGT
GCAATCGGGCAGACACGGCACTTCCCCCGTGGTGAGGGAGGTGGACGTGT
ACGACGACGTGTCGTCGGAGGCGTCCATGTCGTCCGCGGGCACGGAGGCC
GCGTCGAGGGTGCAGAGCGAGATGACGGGCACGTACGACCACGACACGGC
GGCCGGCGGGAGCACGGCCTCCTTCCAGGCCGGCGGCGGCGACAGCGGCC
GCGGCCATCGCCGCCCCGGGTCCGGCGCTAGCGGCGCCCCCTCCCCGGGC
CAGCGCATGCTGGGCTACCAGCAAGGGTACGGCTCCTCGAGGTCCTCGAT
AGTGTCGAGGGTGGCCGGGGCGGATTCGGAGATGGGGTCTCACCGTCTGG
TCCCCCCGCAGGACAGCTGGCAGAACTCGCCGGGGCCCGGGGTGGGGGCG
TCGGCGGGGGGTGGGATCGAGCGGGTGCTGTCCGGGGAGACGACGGACTC
CAGCATCCTGGAGCAGCAGGCGAGGGACAGACACGGCAGCGGCCAGCAGG
AGGACGGGGACTTCGGTAGGGTGTGGCTGGCGGATCGAGCGCACGCGAGA
CAGTTCGATGATGCAGACGAGGATCGGGCCGTCGGTGGTCCGTCGGTGGT
GTCGGTCGGGGGGTGGTTGCAGAGTTCGGTTTCCGAGCGTGCGTGCTTGC
GTTACAATCAAAAGAGTCGTCCATTAGCGTATCGACAGCAGGCACGTGCC
GAGAAAAAAAAAACACGAGGAAGTCGGCGACACTAAACCGTCTGGGCACT
CGTCGCGTTGTCGGTCGGGGGGTGGTTGCAGAGTTCGGTTTCCGAGCGTG
CGTGCTTGCGTTACAATCAAAAGAGTCGTCCATTAGCGTATCGACAGCAG
GCACGTGCCGAGAAAAAAAAAACACGAGGAAGTCGGCGACACTAAACCGT
CTGGGCACTCGTCGCGTT
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