mRNA_Ecto-sp9_F_contig11059.930.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11059.930.1
Unique NamemRNA_Ecto-sp9_F_contig11059.930.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11059.930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.230e-55
Identity = 132/136 (97.06%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:  259 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGFDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXX--VHVDGCHVAMAXXXXXXXAVGG 660
            MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVG DNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXX  VHVDGCHVAMAXXXXXXX VGG
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMAXXXXXXXXVGG 136
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BLAST of mRNA_Ecto-sp9_F_contig11059.930.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.790e-49
Identity = 97/123 (78.86%), Postives = 97/123 (78.86%), Query Frame = 1 
Query:  259 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGFDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGXXXXXXXXXXXXXXXXXXXXXXXXVHVDGCHVAMA 627
            MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAV VG DNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKG                        VHVDGCHVAMA
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGAGAGGRRYHRTGGDGGSAVV---VHVDGCHVAMA 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11059.930.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.230e-5597.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.790e-4978.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11059contigEcto-sp9_F_contig11059:1371..3268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000690.1
Exons2
Model size660
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11059.930.1prot_Ecto-sp9_F_contig11059.930.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11059 1371..3010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928342.685796-CDS-Ecto-sp9_F_contig11059:1370..16611622928342.685796-CDS-Ecto-sp9_F_contig11059:1370..1661Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 1371..1661 -
1692277840.3273106-CDS-Ecto-sp9_F_contig11059:1370..16611692277840.3273106-CDS-Ecto-sp9_F_contig11059:1370..1661Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 1371..1661 -
1622928342.7012107-CDS-Ecto-sp9_F_contig11059:2899..30101622928342.7012107-CDS-Ecto-sp9_F_contig11059:2899..3010Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 2900..3010 -
1692277840.3358507-CDS-Ecto-sp9_F_contig11059:2899..30101692277840.3358507-CDS-Ecto-sp9_F_contig11059:2899..3010Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11059 2900..3010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928342.713009-UTR-Ecto-sp9_F_contig11059:3010..32681622928342.713009-UTR-Ecto-sp9_F_contig11059:3010..3268Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11059 3011..3268 -
1692277840.346739-UTR-Ecto-sp9_F_contig11059:3010..32681692277840.346739-UTR-Ecto-sp9_F_contig11059:3010..3268Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11059 3011..3268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11059.930.1

>prot_Ecto-sp9_F_contig11059.930.1 ID=prot_Ecto-sp9_F_contig11059.930.1|Name=mRNA_Ecto-sp9_F_contig11059.930.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=134bp
MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGFDNLG
SLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKGGGGGGGGGGRRY
HRTGGDGGSAVVVHVDGCHVAMAAAAAAAAAVGG
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mRNA from alignment at Ecto-sp9_F_contig11059:1371..3268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11059.930.1 ID=mRNA_Ecto-sp9_F_contig11059.930.1|Name=mRNA_Ecto-sp9_F_contig11059.930.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1898bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11059:1371..3268- (Ectocarpus species9 EcSCA_722f female)
CGCACGTCTCCTGTTCCCGCTCCTACTTCACGACACAGCCATAATCTCCT
CCCTAGTCGGCGCGCTGCTCTACGCTCCGCGATCCACAGGGGCAGTTTTT
GGTCGGATCCTTGCTGTTCTCGGGGCTCGAGGGCTGTGCCCGCGTGCTCC
GCGAGCCAGAAGTGCCAACGAAAAGGTCGGAGTTGAACCTTGTTGGAGAG
TCGAGTCACCTCTTCTGTGCAGTAGTGTCAGGTGGCAGGCGGCGGCGCGG
GATAAAAAATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGCGTG
CTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGGTGG
GAGCGAAGCCGGGCAGCAGGTTAGCGACTCCTCTTTTTTATCAACGCACC
ACTTCTTTTTTAGCCCTCGACGCCGGCGCTGTTTTTCTCTTCTCTCACTC
AAAATTTGACGATTTTCCGTAATGATGTGAGTCGCCTTGTTCTCGTCCCC
TCTGGCGATATGCATAGTAGATGATCCTTCAAATGTAGCCTCCGTCGCCC
CGTCGTCATGTAAGGATACGGGCGGAAGAGATGACTGCGTGATTATGACT
GCCACATTTTTGACGACATGGCGACGACAAAAGCCGTTTTAGCGCCCCGG
GGAAAATATCTTCCTACTTCGGCGCCCCTGTGAGATACGAAAGCCGTTGC
ACTTTCTCCACATCTCCACTACATCCCTATCTCAATACACTCCCAGCAGC
CTCTCTCGATTGACTTGATCGAGCTGGCTAGGGCTGGATTCTGACGAGGT
TAGGAACTGTCACCTGCGGATCCTAGCGTGATTCACAAGCAAATGAAGTG
TTGGCGTTGGGTGTTGGCCGCTTGGGAGGTAGTCAGTCGTAACATCAAAC
AAGAGGCACAACGGACAACAATGGATAGCATTTCGTTGATTGCGGATCCA
TTTCTTGCATCCGGATCGATGTTCTCCTGAGTGCGCCGATGTCTGTAGTC
CTCGTGTGTTTTGTGCAGTCAGATCGCCATCGGAAATAGTGTTGTGCGAT
GGGCTGGTTTTTCTACATGTATCCCCGTTATTTTCTTTGGCGCGCACGCG
CGCACACACGCTGGGTGGGGTCACGGAATCGCTTTCTACGCCGCCCCCCA
AAAGTTCTTCCGCCGGCACGATCGATCCTTATCCTTCCTCCCACGCCTTA
CTTCCCTCGAGGATGAGGAGGATCGTCTTTTTCTCTTAGAGGCTTGTCTT
GTTGACTGTGATGCTTTGTGGAGAAGACGTGTAGCGTGATGCCGTGGTTC
TTCAAGCACACGCACACGCCCAAACCCCGTCGCAGCTTTTGCCTGTAGTT
CCTGCTGCGCACGCTACTCCCGGCTCTGCTGGAGAATGCCCCTTTGCCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGGA
CACTTCTCCTATGCATGCATGCTCTTCGAAGTAGTAGTAAATTCCAAGCA
AATGAATTTCCAACGCACGTCCCCCCTCTGGAAGTAAGCGACAAGCAAAT
TATGTAAGGTCCAAAGTATATACGTCCCCTCCCTTTTCCCCCTTCCCACA
TGTACAGGTCGCCACCGCGGTTGCCGTAGGCTTCGACAACCTCGGCTCTC
TCTGCTCACAGGCCGGCCTGGACCGATGGGAGCTTCTGGGCCTCGCCGTG
CTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTCCTCCAACAGCGTGTA
CGGCAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGGCGGTATCACC
GCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGTCGACGGCTGC
CACGTGGCGATGGCGGCTGCGGCTGCTGCGGCGGCGGCGGTAGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11059:1371..3268-

>mRNA_Ecto-sp9_F_contig11059.930.1 ID=mRNA_Ecto-sp9_F_contig11059.930.1|Name=mRNA_Ecto-sp9_F_contig11059.930.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11059:1371..3268- (Ectocarpus species9 EcSCA_722f female)
ATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGCGTGCTGGAGTT
CCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGGTGGGAGCGAAG
CCGGGCAGCAGATGGAGGCGATCGAGCTGCTGGGGGGGATGGTGAACAGC
GTGCTGGAGTTCCCGCTGGTTGGGTTCCTGGGTCGGCTGGTACCCGTGGG
TGGGAGCGAAGCCGGGCAGCAGGTCGCCACCGCGGTTGCCGTAGGCTTCG
ACAACCTCGGCTCTCTCTGCTCACAGGCCGGCCTGGACCGATGGGAGCTT
CTGGGCCTCGCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTC
CTCCAACAGCGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GTAGGCGGTATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTG
CACGTCGACGGCTGCCACGTGGCGATGGCGGCTGCGGCTGCTGCGGCGGC
GGCGGTAGGCGGCGTCGCCACCGCGGTTGCCGTAGGCTTCGACAACCTCG
GCTCTCTCTGCTCACAGGCCGGCCTGGACCGATGGGAGCTTCTGGGCCTC
GCCGTGCTGTCGGCGATCACCGTCTACCGCAAGGAGCTGTCCTCCAACAG
CGTGTACGGCAAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGGCGGT
ATCACCGCACCGGCGGCGACGGCGGCAGCGCCGTCGTCGTGCACGTCGAC
GGCTGCCACGTGGCGATGGCGGCTGCGGCTGCTGCGGCGGCGGCGGTAGG
CGGC
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