mRNA_Ecto-sp9_F_contig11050.924.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11050.924.1
Unique NamemRNA_Ecto-sp9_F_contig11050.924.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.400e-45
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 3 
Query:    3 YGEAAMGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGASGSGAXXXXXXXXXXXXXXXPTNAELLKQSQSYALLS 350
            + +++MGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGASG   XXXXXXXXXXXXXXXPTNAELLKQSQSYALLS
Sbjct:   66 FEKSSMGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGASGGXXXXXXXXXXXXXXXXXPTNAELLKQSQSYALLS 181
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.300e-34
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   18 MGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGASG 245
            MGDRELLQWVSDKLHDVVGFSESSTAQFV+ALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELM RVGASG
Sbjct:    1 MGDRELLQWVSDKLHDVVGFSESSTAQFVLALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMTRVGASG 76
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.370e-15
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 3 
Query:   18 MGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGASGSGAXXXXXXXXXXXXXXXPTNAELLKQSQSYALL 347
            M DRE+ +WVSDKLHD++G+S+++TAQF+ ALA+RA+     A AL+  L+D DVP N ++R+FA EL+ +VG + +                 PT AELL  S+SY LL
Sbjct:    1 MSDREVNRWVSDKLHDILGYSDNTTAQFITALAKRATS----ADALVEQLADNDVPVNDSTRSFARELLMKVGGAAA-------RPAQPAAPRGPTQAELLAASKSYGLL 99
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: RNA (helicase n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I880_MICPS)

HSP 1 Score: 66.6 bits (161), Expect = 7.890e-10
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 3 
Query:   18 MGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGASGSG 251
            M +R L  WVSDKLHD++GF+E + A +V+AL ++AS +G     L + L+   +P + T+R+FAAELM+RV  +G G
Sbjct:    1 MDERALKSWVSDKLHDILGFAEGALASYVIALGKKASDAGS----LASQLASQGLPDDGTTRSFAAELMSRVPRAGGG 74
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: RNA (helicase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NYA0_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 3.170e-8
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:   24 DRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARV-GASGSG 251
            DREL  WVSD+LHDV GFS+ +TA F++A AR+A     G AAL   LS   +P      AFAAEL++R+  +SG+G
Sbjct:    4 DRELRAWVSDRLHDVAGFSDRTTADFILATARKAKA---GPAALARALSAAGLPDTPPVAAFAAELLSRLPSSSGAG 77
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: Pre-mRNA-splicing (factor ATP-dependent RNA helicase-like protein cdc28 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2KYR4_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 3.720e-6
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 3 
Query:   24 DRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAA-ALLAGLSDLDVPANATSRAFAAELMARVGAS 242
            DREL  WVSD+LH++VGFS+ +TA F++A A++     KG+A AL   LS   +P NA   AF  EL++R+ +S
Sbjct:    4 DRELRSWVSDRLHELVGFSDRTTADFILAQAKKV----KGSAPALGRHLSAAGLPDNAAVAAFCGELLSRLPSS 73
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: RNA (helicase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V8T8_TETOB)

HSP 1 Score: 54.7 bits (130), Expect = 1.080e-5
Identity = 31/70 (44.29%), Postives = 48/70 (68.57%), Query Frame = 3 
Query:   24 DRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARV 233
            D+EL  WVSD+LH +VGFS+ + A FV+A A++A    K  ++LL  L+   VPA ++ +AFA  ++AR+
Sbjct:    4 DKELRGWVSDQLHSLVGFSDRTVADFVLASAKKA----KDPSSLLKSLAAFGVPAGSSGQAFAEGVLARL 69
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: ATP-dependent (RNA helicase DHX8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1Z9_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.460e-5
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:   39 QWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARVGAS 242
            QW SDKLH++VGFSESS   +V+AL     KS K  + +++ L + D P +  +R FA E+M+RV +S
Sbjct:   10 QWTSDKLHELVGFSESSAVDYVIALG----KSAKSESDVVSRLHEYDFPRDERTRQFAREVMSRVKSS 73
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BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Match: Putative (ATP-dependent RNA helicase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QBU1_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 3.550e-5
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:   24 DRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGLSDLDVPANATSRAFAAELMARV 233
            D+EL  WVSD+LH +VGFS+ + A FV+A A++A    K  ++LL  L    VPA+++ + FA  ++AR+
Sbjct:    4 DKELRGWVSDQLHSLVGFSDRTVADFVLASAKKA----KDPSSLLKSLEAFGVPASSSGQVFAEGVLARL 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11050.924.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized1.400e-4593.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.300e-3497.37protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
P-loop1.370e-1545.45containing nucleoside triphosphate hydrolase prote... [more]
RNA7.890e-1046.15helicase n=1 Tax=Micromonas pusilla TaxID=38833 Re... [more]
RNA3.170e-850.65helicase n=1 Tax=Raphidocelis subcapitata TaxID=30... [more]
Pre-mRNA-splicing3.720e-647.30factor ATP-dependent RNA helicase-like protein cdc... [more]
RNA1.080e-544.29helicase n=1 Tax=Tetradesmus obliquus TaxID=3088 R... [more]
ATP-dependent1.460e-545.59RNA helicase DHX8 n=1 Tax=Hondaea fermentalgiana T... [more]
Putative3.550e-542.86ATP-dependent RNA helicase n=1 Tax=Scenedesmus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11050contigEcto-sp9_F_contig11050:2..2048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue8.9e-30
Seed eggNOG ortholog2880.D8LHZ7
Preferred namecdc28
KEGG koko:K12813,ko:K12814
KEGG Pathwayko03040,map03040
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034247,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042623,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070035,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG1643@1,KOG0923@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons3
Model size478
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11050.924.1prot_Ecto-sp9_F_contig11050.924.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11050 19..2048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928342.1358278-UTR-Ecto-sp9_F_contig11050:1..181622928342.1358278-UTR-Ecto-sp9_F_contig11050:1..18Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11050 2..18 +
1692277840.073501-UTR-Ecto-sp9_F_contig11050:1..181692277840.073501-UTR-Ecto-sp9_F_contig11050:1..18Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11050 2..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928342.1507149-CDS-Ecto-sp9_F_contig11050:18..2301622928342.1507149-CDS-Ecto-sp9_F_contig11050:18..230Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11050 19..230 +
1692277840.0891254-CDS-Ecto-sp9_F_contig11050:18..2301692277840.0891254-CDS-Ecto-sp9_F_contig11050:18..230Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11050 19..230 +
1622928342.1613088-CDS-Ecto-sp9_F_contig11050:875..10381622928342.1613088-CDS-Ecto-sp9_F_contig11050:875..1038Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11050 876..1038 +
1692277840.098926-CDS-Ecto-sp9_F_contig11050:875..10381692277840.098926-CDS-Ecto-sp9_F_contig11050:875..1038Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11050 876..1038 +
1622928342.1760092-CDS-Ecto-sp9_F_contig11050:1964..20481622928342.1760092-CDS-Ecto-sp9_F_contig11050:1964..2048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11050 1965..2048 +
1692277840.1090436-CDS-Ecto-sp9_F_contig11050:1964..20481692277840.1090436-CDS-Ecto-sp9_F_contig11050:1964..2048Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11050 1965..2048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11050.924.1

>prot_Ecto-sp9_F_contig11050.924.1 ID=prot_Ecto-sp9_F_contig11050.924.1|Name=mRNA_Ecto-sp9_F_contig11050.924.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
MGDRELLQWVSDKLHDVVGFSESSTAQFVVALARRASKSGKGAAALLAGL
SDLDVPANATSRAFAAELMARVGASGSGAGGGGRALQRQQQQRQPTNAEL
LKQSQSYALLSSDEEDGGGGYSSLKAKEDRRAEKKALRKREKKAAAAAAE
ASS
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mRNA from alignment at Ecto-sp9_F_contig11050:2..2048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11050.924.1 ID=mRNA_Ecto-sp9_F_contig11050.924.1|Name=mRNA_Ecto-sp9_F_contig11050.924.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2047bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11050:2..2048+ (Ectocarpus species9 EcSCA_722f female)
TCTACGGAGAAGCAGCCATGGGCGATCGGGAGCTGCTGCAATGGGTGTCC
GACAAGCTCCACGACGTGGTCGGCTTCAGCGAGAGCTCCACGGCGCAGTT
CGTCGTGGCCCTGGCGCGGCGGGCGTCCAAGTCCGGCAAGGGGGCCGCGG
CACTGTTGGCGGGACTGTCAGACCTGGACGTGCCCGCGAACGCCACCTCG
CGAGCCTTCGCGGCGGAACTTATGGCCAGGTACGTATGTATGCACAAGGC
GGCGCGCCGCCGGAGTGGGCTCAGCAGGGCTGGGCTAAGGTAGTAGTTCC
ATCAAGACGTGATGAGAGATGAAAGTAAGCATACCGGTATGTTGGTGTTG
GTCAGCTGCCTTCAGCGACGTTTCCCACCCTCGGAACAGGTCATCCAGCT
GACGTGTTTTTGACTCGAAGAGCCCAACGAAGCTCACCGAACCAAAAAGA
AAAATGTACAAGTCTGTATACAGTCTCATGTGCGTTGCTGAAGGCTTGGT
GCCTCTGTGATAGAGTGTTTCTCGTGTAGATCGATGTATGTATGTAGAGA
TGCTGGCGTTAAGCGGAGACTTGGTGTGTGTGGAGTTTTTCTCCTGTGGA
TCGACGTGTGTATGGATGATGCTGCTGCTGGACGACTACTTGGTATCTGC
GGACTGTTTCTCGTGTAGATACGACTCTTCCTTCCTGGTTCCCCCGGTGT
CGGACGAAGGACTTGGAAGTTTTGCAGGGTCTTCATGGGCTTCGTTCGTC
CCTCTTCCGATGGTGTGCCCACACCCCCTGCTCGCTGTAGCGTTTCAATA
GCACGTTGCTCGAACCCACCTGTCCTTGCGCCCTAATGCGGACATTCGCC
ACATTGCGTCCATTTTTGCGACAGGGTTGGAGCCTCCGGGAGCGGGGCAG
GGGGGGGCGGCCGCGCGCTGCAGCGGCAACAGCAGCAGCGGCAGCCCACG
AACGCGGAGCTGCTGAAGCAAAGCCAGAGCTACGCCCTGCTCTCTAGCGA
CGAGGAGGACGGCGGGGGGGGCTATTCGAGCCTCAAGGTGAGGCGTCGCC
GTTGGCTGTGGCTGTGGTTTTAGTCGCCGGAGATAGTTGTGCATGGCTTG
CCGGTTTGTGTTTGTATTTTTTTGTTGGGGCAGGGGGAGGTGGGTTGTCA
GTCGCCGCTGCATTACAAGCACGCCCCCAACGCAAACGTTACGATAAGTT
GGTTACGTAGTATTTTTCCGTGGCGGTGTCGTATGTATCACCCCTCACAT
CGATCGATCCAACCCCAAACATCCGTACCTTTTTCATGGCGATGAGAGGC
GCTGCCTTCTGCCCTCCCCCCGCTCGAGCCATCCTCGTAACCCCCCCTCA
GCACGCACATGCTTCATCTACATAACACCCGATGCGTCCCTCGTATCCCC
TCCAAAAAACTATCAACAGCAGTGGACGGTGACGCTAGTATTTGTCGAAC
GTCGATGTTTTGCCAGGACGAAAACCTCACCCCGTTCCAGGATGCGAAAC
AAGTGCCATGAAGCTTTAGCAGAAGGGAATGCCCCCCCTCCTGCCTCACC
TCGCTGTCAATACCCGCCATTAATTATCGCCATTATTTATTTTCGGTATG
TAAAACTCTCAGCTACGTGGTAAACTTGATGTCTCCAGGCCTCAGTACAA
CCCCGCCTCCCGCCATCGCTTTCAATGTGCGCCACTTCCTAAGCTTGGAA
ATGTCCCCCACCCTGCGCGCCTGCTTCTGACGTGGTTTGTTTGCCAGACA
AGTACGCGTCTAGAAAGCTGCGCAACTGTTTGTTCCTAACGGCTTCGTTG
CAAATGTCGACGTGACATTCTCAGCTGTTGTTGCAGCATGGACACACAAT
AATAGACACACAATTCACTACCCCCCATCCTCCTCTGGAGGACAAGTGGT
GAATGGCCGAACAACTAACGCAGGCGAAACATATGTACCCCCCCCCATGC
TCTTTTACGTCAGGCGAAAGAAGACCGACGGGCCGAGAAAAAGGCTTTAC
GGAAACGGGAAAAGAAGGCCGCCGCTGCCGCCGCCGAAGCCTCTTCT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11050:2..2048+

>mRNA_Ecto-sp9_F_contig11050.924.1 ID=mRNA_Ecto-sp9_F_contig11050.924.1|Name=mRNA_Ecto-sp9_F_contig11050.924.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11050:2..2048+ (Ectocarpus species9 EcSCA_722f female)
ATGGGCGATCGGGAGCTGCTGCAATGGGTGTCCGACAAGCTCCACGACGT
GGTCGGCTTCAGCGAGAGCTCCACGGCGCAGTTCGTCGTGGCCCTGGCGC
GGCGGGCGTCCAAGTCCGGCAAGGGGGCCGCGGCACTGTTGGCGGGACTG
TCAGACCTGGACGTGCCCGCGAACGCCACCTCGCGAGCCTTCGCGGCGGA
ACTTATGGCCAGATGGGCGATCGGGAGCTGCTGCAATGGGTGTCCGACAA
GCTCCACGACGTGGTCGGCTTCAGCGAGAGCTCCACGGCGCAGTTCGTCG
TGGCCCTGGCGCGGCGGGCGTCCAAGTCCGGCAAGGGGGCCGCGGCACTG
TTGGCGGGACTGTCAGACCTGGACGTGCCCGCGAACGCCACCTCGCGAGC
CTTCGCGGCGGAACTTATGGCCAGGGTTGGAGCCTCCGGGAGCGGGGCAG
GGGGGGGCGGCCGCGCGCTGCAGCGGCAACAGCAGCAGCGGCAGCCCACG
AACGCGGAGCTGCTGAAGCAAAGCCAGAGCTACGCCCTGCTCTCTAGCGA
CGAGGAGGACGGCGGGGGGGGCTATTCGAGCCTCAAGGGTTGGAGCCTCC
GGGAGCGGGGCAGGGGGGGGCGGCCGCGCGCTGCAGCGGCAACAGCAGCA
GCGGCAGCCCACGAACGCGGAGCTGCTGAAGCAAAGCCAGAGCTACGCCC
TGCTCTCTAGCGACGAGGAGGACGGCGGGGGGGGCTATTCGAGCCTCAAG
GCGAAAGAAGACCGACGGGCCGAGAAAAAGGCTTTACGGAAACGGGAAAA
GAAGGCCGCCGCTGCCGCCGCCGAAGCCTCTTCTGCGAAAGAAGACCGAC
GGGCCGAGAAAAAGGCTTTACGGAAACGGGAAAAGAAGGCCGCCGCTGCC
GCCGCCGAAGCCTCTTCT
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