mRNA_Ecto-sp9_F_contig11049.918.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11049.918.1
Unique NamemRNA_Ecto-sp9_F_contig11049.918.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11049.918.1 vs.
Match: Myb-like (DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 1.430e-101
Identity = 320/365 (87.67%), Postives = 323/365 (88.49%), Query Frame = 1 
Query:    1 RRKRNCSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMSQPLGESLMNDPFLATPEPTTGSRKDIDQALSLLQLSGGSGSQSDLTRSARRSSXXXXXXXXXKG---TRGPANHGLFPPLNSQARIIFDLVENVVPGSSSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXWGAKSPAGVHGHMLHHPSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RQKGKPKAKGHVGGQRPAVQAPVSKPRGTKGGGPGSFCSK 1083
            +RKRN SQLATFGDENGAPSPFPSDGG KNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQM+QPLGESLMNDPFLATPEPTTGSRKDIDQALSLLQLSGGSGSQSDLTRSARRSS XXXXXXXX     T GPANHGLFPPLNSQ     DLVENVVP SSSGAG                          WGAKSPAGVHGHMLHHPSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RQKGKPKAKGHVGGQRPAVQAPVSKP+GTKGGGPGSFCSK
Sbjct:  193 KRKRNYSQLATFGDENGAPSPFPSDGGPKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMNQPLGESLMNDPFLATPEPTTGSRKDIDQALSLLQLSGGSGSQSDLTRSARRSSGXXXXXXXXXXXXXTPGPANHGLFPPLNSQ-----DLVENVVPASSSGAGAASQAGAGPSFSSVTSPRSARGG---WGAKSPAGVHGHMLHHPSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKGKPKAKGHVGGQRPAVQAPVSKPQGTKGGGPGSFCSK 549
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BLAST of mRNA_Ecto-sp9_F_contig11049.918.1 vs.
Match: MYB (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 4.650e-79
Identity = 283/367 (77.11%), Postives = 288/367 (78.47%), Query Frame = 1 
Query:    1 RRKRNCSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPQMSQPLGESLMNDPFLATPEPTTGSRKDIDQALSLLQLSGGSGSQSDLTRSARRSSXXXXXXXXXKGTRGPANHGLFPPLNSQARIIFDLVENVVPGSSSGAGXXXXXXXXXXXXXXXXXXXXXXXXXXWGAKSPAGVHGHMLHHPSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR------QKGKPKAKGHVGGQRPAVQAPVSKPRGTKGGGPGSFCSK 1083
            +RKRN SQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDP ++QPLG+SLMNDPFLATPEPTTGSRKDIDQALSLLQLSGGSGSQ                                           DLVENVVPGSSSGAG                          WGAKSPAGVHGHMLHHPSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       QKGKPKAKG VGGQRPAVQAPVSKP+GTKGGGPGSFCSK
Sbjct:  223 KRKRNYSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQVTFDDTHRFAMEEDPHINQPLGDSLMNDPFLATPEPTTGSRKDIDQALSLLQLSGGSGSQ-------------------------------------------DLVENVVPGSSSGAGASSQAGAGPSFSSATSPRSARGGGGRWGAKSPAGVHGHMLHHPSCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQKGKPKAKGQVGGQRPAVQAPVSKPQGTKGGGPGSFCSK 546
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11049.918.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Myb-like1.430e-10187.67DNA-binding domain containing protein n=1 Tax=Ecto... [more]
MYB4.650e-7977.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11049contigEcto-sp9_F_contig11049:795..3779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue6.2e-90
Seed eggNOG ortholog2880.D8LCS2
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Exons4
Model size1083
Cds size1083
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11049.918.1prot_Ecto-sp9_F_contig11049.918.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11049 795..3779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928339.0271442-CDS-Ecto-sp9_F_contig11049:794..9441622928339.0271442-CDS-Ecto-sp9_F_contig11049:794..944Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 795..944 +
1692277839.6230414-CDS-Ecto-sp9_F_contig11049:794..9441692277839.6230414-CDS-Ecto-sp9_F_contig11049:794..944Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 795..944 +
1622928339.0409622-CDS-Ecto-sp9_F_contig11049:1685..18651622928339.0409622-CDS-Ecto-sp9_F_contig11049:1685..1865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 1686..1865 +
1692277839.6363258-CDS-Ecto-sp9_F_contig11049:1685..18651692277839.6363258-CDS-Ecto-sp9_F_contig11049:1685..1865Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 1686..1865 +
1622928339.0562034-CDS-Ecto-sp9_F_contig11049:2613..27421622928339.0562034-CDS-Ecto-sp9_F_contig11049:2613..2742Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 2614..2742 +
1692277839.6516488-CDS-Ecto-sp9_F_contig11049:2613..27421692277839.6516488-CDS-Ecto-sp9_F_contig11049:2613..2742Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 2614..2742 +
1622928339.0730243-CDS-Ecto-sp9_F_contig11049:3155..37791622928339.0730243-CDS-Ecto-sp9_F_contig11049:3155..3779Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 3156..3779 +
1692277839.6613576-CDS-Ecto-sp9_F_contig11049:3155..37791692277839.6613576-CDS-Ecto-sp9_F_contig11049:3155..3779Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11049 3156..3779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11049.918.1

>prot_Ecto-sp9_F_contig11049.918.1 ID=prot_Ecto-sp9_F_contig11049.918.1|Name=mRNA_Ecto-sp9_F_contig11049.918.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=361bp
RRKRNCSQLATFGDENGAPSPFPSDGGSKNASRVLSNSRLTVHKDGAYMQ
VTFDDTHRFAMEEDPQMSQPLGESLMNDPFLATPEPTTGSRKDIDQALSL
LQLSGGSGSQSDLTRSARRSSGGGGDGGGGKGTRGPANHGLFPPLNSQAR
IIFDLVENVVPGSSSGAGAASQAGAGPSSSSATSPRSARGGGGGWGAKSP
AGVHGHMLHHPSCSSGGGGGAGPLSSPLMSSSAVSSSVLSPPPPSPFSRA
AAAASASYHNPAAAAAAAAIRILPPPPPEVGGVGNNKKKAAGGAGRGGGV
SQGGGGKSKGGGSAAAASGGGRQKGKPKAKGHVGGQRPAVQAPVSKPRGT
KGGGPGSFCSK
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mRNA from alignment at Ecto-sp9_F_contig11049:795..3779+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11049.918.1 ID=mRNA_Ecto-sp9_F_contig11049.918.1|Name=mRNA_Ecto-sp9_F_contig11049.918.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2985bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11049:795..3779+ (Ectocarpus species9 EcSCA_722f female)
AGGAGGAAGCGCAACTGCTCGCAGCTGGCGACTTTCGGAGACGAGAACGG
AGCCCCGTCCCCGTTCCCCAGCGACGGCGGTTCCAAGAACGCTTCCCGAG
TGCTGTCGAACTCCAGACTCACCGTGCACAAGGACGGGGCGTACATGCAG
GTCCGTTGTGCCTGCCGGATGCCGCGCGGCCGAAAGTTGTTGTCGCCGGC
ATGAGATTTCCTTGTGGGATGCATTCCTCTTGCCGGGACTGCTGCTGCTG
CTGCTGCTGTCGATTTGGCACGGCATATGCCCACGATGTCGAGCTGTAGG
GGGTGTTTTTTTTTTTTGTGTGCTTGATCTCACCGTTGGCATGCGGGTTC
CGGTAACGAGAGGGGGCCGAGGAGACTCGGGGCGGATCCGTCTCTTGGCT
TTGCCCTGTGTATGTGATCACGACTGATGTAGTTCATGGGAAGTTAATAT
GTTCACTAGTGTATTGGATCTCGGAGGCTGCATCCATCACCTCTCTAGCC
CAACTAGCCATGTCAATATACTTAGCCGTCTTGAGGCCTGCGTTTCAGCC
CGCTGTTTTGCTTCCACTCGAGGCCCCCGTATTCACCAATTCACGACTGC
TGTTGTTTTTGCGGATTCGAAGTCGGAAGGCTGTGTACCATGCATACCAT
CGTTTCCTTTTCCACCGCATTAGAGCACGGCGTGACTTGCTACTTGTGTC
TTTTACCCCCGCCCTTCCGGGCCAAAGTTGTTACCATTGTCGTTTCCTTT
TCCACCGGCATTACTTTCGAGCCAAAATTGTTTCCGTTGTCGTTTCCTTT
TCCACCGGCATTACAGCATGGTGGGAATTGCTACATACTTGTGTCTTGAC
CCCCGCCGAAATTTGTTGCCCCCACTTCCTGGCTTCCTCAGGTGACATTC
GACGACACCCACCGCTTCGCCATGGAGGAGGACCCTCAGATGAGCCAACC
CTTGGGGGAGTCGCTGATGAACGACCCGTTCCTCGCCACGCCGGAGCCGA
CGACGGGGAGCAGGAAGGACATCGACCAGGCCCTGAGCCTCTTGCAGCTG
TCGGGAGGCAGCGGGTCCCAGGTGTGTGCTGGGCGTGTGGCGGGCTCTGG
GTGGTTGAGAGGGTGTTTTGTTCAGCTTGCACGGGGGGCCTTGGATGGCT
GCAACTACGTGTGTGGCGGGCGCAGCAGTCGTTGGTAAAGGAGAGGTGTT
TGTCGCAAGGTGAAGGTGCTTGTACGGGTGTGTGAGTGTGTGCGTCAGCC
GGCAGACGGAGAGACGCGCCGTGGTGATACTGGCGGCAGGGTCTAAGCAT
GCAGATGGATGAGTTGCCTTCTTGCTCTCCAAGCTCTTGTCGATTGAGAG
ACCGGCGGCTTTTCTTCGCTTTTCTCTTGGTGTTCCTCGAGGGTGCAACT
TTGTATTCCACATCGCGAGCAGCAATAACCCGATTCCTTGCTGGTGTGTG
GTGCTTCCTCTCGTACCCCTATACAGACCCGATGGCAGGTGCTGACTGAC
TCATGTTCGGCATATTTAACACTGTACGTTTTTTGCGCGGTCCATCCCGT
GGGGTGCCTCACCGCGTCCCGTCCGATGCATCATCTGTCCCGTGGAAGTT
CCTCGCCTCGTCCCGCGAAACACCTCACCCGTCCCATGAAATCCCTCACC
TCGTCCCGTCCGTTGCCTTGCCCGCCCTATGAAATGCCTCACCTGTCCCG
TCGATATACCTCGTCCCGTGAAACGCCTCACCCGTCCCATGAAATTCCTC
ACCTCGTCCCGCCCGATTCCTTTCCCGTTCCATTTGATGCTTCATCTCGC
CCGTTCCTGGACGCCGCAGTCGGACCTCACTCGCTCGGCACGTCGGAGCA
GCGGGGGGGGCGGAGACGGAGGAGGAGGCAAGGGGACGCGGGGACCCGCG
AACCATGGCTTGTTCCCCCCTCTCAACTCACAGGCAAGAATAATTTTTGT
TTCAGAAGTGTGCGGCGGAGGCGGCGTTATTGACGACAGGCGGTGGCAGT
GCGGCGGTGTTGTTGATTGTTTTCTGCCCATTTTGAAGCGTGCGAGCGGC
AGGAAGGGGGGGGTCAATGTGGATTTGCGGGAAACACGCTCAACTCTTCC
GGTGAGAGAGTCGAGATAACGGATTGCTTATGCATGTGGACACCTGGAAA
ACGAAATAAGAAGCAGGTTCTGCGGTAAACAATCGAGAGTTGATCGGCAC
CGTGGGCACCGCCGTTGCTTTTGTTCCGTCTTCGTTCTGAAGCGTGGTCT
ACTGGTTGGTGGTGACGGTGCGGGCGAACCCTGTTTTGCCATCTAGCCCC
CGCTGGAACTCCCTATCATGCGTCCGTACCCCCCCCCCCCCCCCCCGCCC
CGCCAAAACAGGACCTTGTGGAGAACGTGGTGCCGGGATCGTCATCCGGG
GCCGGTGCCGCCTCTCAAGCAGGAGCTGGACCATCCTCCTCCTCAGCGAC
GTCACCAAGAAGTGCACGCGGCGGCGGCGGCGGCTGGGGAGCCAAGTCTC
CCGCCGGTGTTCACGGCCACATGCTGCACCACCCGAGCTGCAGCAGCGGC
GGCGGCGGGGGCGCGGGTCCCTTGTCGTCGCCGTTGATGTCTTCCTCCGC
GGTGTCATCGTCGGTCCTGTCCCCGCCGCCGCCGTCCCCGTTCTCGCGTG
CCGCCGCCGCCGCGTCCGCCTCGTACCACAACCCGGCCGCCGCCGCGGCT
GCCGCGGCCATCCGCATCCTCCCGCCCCCGCCCCCGGAAGTCGGCGGGGT
GGGGAACAACAAGAAGAAAGCGGCGGGGGGAGCGGGCCGCGGCGGAGGAG
TGTCTCAGGGGGGCGGCGGGAAGAGCAAGGGGGGGGGCTCCGCCGCTGCT
GCGTCGGGGGGGGGCAGGCAGAAGGGGAAGCCCAAGGCGAAGGGGCACGT
GGGGGGCCAGCGGCCGGCGGTCCAGGCCCCCGTGTCGAAGCCGCGGGGGA
CCAAGGGGGGGGGCCCTGGGTCGTTTTGTAGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11049:795..3779+

>mRNA_Ecto-sp9_F_contig11049.918.1 ID=mRNA_Ecto-sp9_F_contig11049.918.1|Name=mRNA_Ecto-sp9_F_contig11049.918.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2166bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11049:795..3779+ (Ectocarpus species9 EcSCA_722f female)
AGGAGGAAGCGCAACTGCTCGCAGCTGGCGACTTTCGGAGACGAGAACGG
AGCCCCGTCCCCGTTCCCCAGCGACGGCGGTTCCAAGAACGCTTCCCGAG
TGCTGTCGAACTCCAGACTCACCGTGCACAAGGACGGGGCGTACATGCAG
AGGAGGAAGCGCAACTGCTCGCAGCTGGCGACTTTCGGAGACGAGAACGG
AGCCCCGTCCCCGTTCCCCAGCGACGGCGGTTCCAAGAACGCTTCCCGAG
TGCTGTCGAACTCCAGACTCACCGTGCACAAGGACGGGGCGTACATGCAG
GTGACATTCGACGACACCCACCGCTTCGCCATGGAGGAGGACCCTCAGAT
GAGCCAACCCTTGGGGGAGTCGCTGATGAACGACCCGTTCCTCGCCACGC
CGGAGCCGACGACGGGGAGCAGGAAGGACATCGACCAGGCCCTGAGCCTC
TTGCAGCTGTCGGGAGGCAGCGGGTCCCAGGTGACATTCGACGACACCCA
CCGCTTCGCCATGGAGGAGGACCCTCAGATGAGCCAACCCTTGGGGGAGT
CGCTGATGAACGACCCGTTCCTCGCCACGCCGGAGCCGACGACGGGGAGC
AGGAAGGACATCGACCAGGCCCTGAGCCTCTTGCAGCTGTCGGGAGGCAG
CGGGTCCCAGTCGGACCTCACTCGCTCGGCACGTCGGAGCAGCGGGGGGG
GCGGAGACGGAGGAGGAGGCAAGGGGACGCGGGGACCCGCGAACCATGGC
TTGTTCCCCCCTCTCAACTCACAGGCAAGAATAATTTTTTCGGACCTCAC
TCGCTCGGCACGTCGGAGCAGCGGGGGGGGCGGAGACGGAGGAGGAGGCA
AGGGGACGCGGGGACCCGCGAACCATGGCTTGTTCCCCCCTCTCAACTCA
CAGGCAAGAATAATTTTTGACCTTGTGGAGAACGTGGTGCCGGGATCGTC
ATCCGGGGCCGGTGCCGCCTCTCAAGCAGGAGCTGGACCATCCTCCTCCT
CAGCGACGTCACCAAGAAGTGCACGCGGCGGCGGCGGCGGCTGGGGAGCC
AAGTCTCCCGCCGGTGTTCACGGCCACATGCTGCACCACCCGAGCTGCAG
CAGCGGCGGCGGCGGGGGCGCGGGTCCCTTGTCGTCGCCGTTGATGTCTT
CCTCCGCGGTGTCATCGTCGGTCCTGTCCCCGCCGCCGCCGTCCCCGTTC
TCGCGTGCCGCCGCCGCCGCGTCCGCCTCGTACCACAACCCGGCCGCCGC
CGCGGCTGCCGCGGCCATCCGCATCCTCCCGCCCCCGCCCCCGGAAGTCG
GCGGGGTGGGGAACAACAAGAAGAAAGCGGCGGGGGGAGCGGGCCGCGGC
GGAGGAGTGTCTCAGGGGGGCGGCGGGAAGAGCAAGGGGGGGGGCTCCGC
CGCTGCTGCGTCGGGGGGGGGCAGGCAGAAGGGGAAGCCCAAGGCGAAGG
GGCACGTGGGGGGCCAGCGGCCGGCGGTCCAGGCCCCCGTGTCGAAGCCG
CGGGGGACCAAGGGGGGGGGCCCTGGGTCGTTTTGTAGCAAGGACCTTGT
GGAGAACGTGGTGCCGGGATCGTCATCCGGGGCCGGTGCCGCCTCTCAAG
CAGGAGCTGGACCATCCTCCTCCTCAGCGACGTCACCAAGAAGTGCACGC
GGCGGCGGCGGCGGCTGGGGAGCCAAGTCTCCCGCCGGTGTTCACGGCCA
CATGCTGCACCACCCGAGCTGCAGCAGCGGCGGCGGCGGGGGCGCGGGTC
CCTTGTCGTCGCCGTTGATGTCTTCCTCCGCGGTGTCATCGTCGGTCCTG
TCCCCGCCGCCGCCGTCCCCGTTCTCGCGTGCCGCCGCCGCCGCGTCCGC
CTCGTACCACAACCCGGCCGCCGCCGCGGCTGCCGCGGCCATCCGCATCC
TCCCGCCCCCGCCCCCGGAAGTCGGCGGGGTGGGGAACAACAAGAAGAAA
GCGGCGGGGGGAGCGGGCCGCGGCGGAGGAGTGTCTCAGGGGGGCGGCGG
GAAGAGCAAGGGGGGGGGCTCCGCCGCTGCTGCGTCGGGGGGGGGCAGGC
AGAAGGGGAAGCCCAAGGCGAAGGGGCACGTGGGGGGCCAGCGGCCGGCG
GTCCAGGCCCCCGTGTCGAAGCCGCGGGGGACCAAGGGGGGGGGCCCTGG
GTCGTTTTGTAGCAAG
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