mRNA_Ecto-sp9_F_contig11011.898.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11011.898.1
Unique NamemRNA_Ecto-sp9_F_contig11011.898.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: ATG13 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW0_ECTSI)

HSP 1 Score: 773 bits (1997), Expect = 2.260e-277
Identity = 386/403 (95.78%), Postives = 391/403 (97.02%), Query Frame = 1 
Query:    1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQPQRRDVNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDDTGFSLYPLRDGGSCGSGLGFSASGGEDHAGHSGRKSTSCYAFKPLKAPHGSVKVICHYRRGVDSKAYQHGQTSTHTAAPDMTTSLIPDYVTDEYERNAAASRMPAAEVNHDWPKLPSTPEDGASGPDGAVDAYGQHAGNKVSKENTSMMHWPSPELGHGYAEKQTHIGPRQGPAPFLTPGPHRGRPLG-HDVMMEPLELGPNAEIHARGPPLLPAPPVRQENEDLIRVSAQTLSGASGRTESNHVDSRCSNGV 1206
            MSSDRSKCEQVVYELLCKVAELVVSSRVSL+QPQRR+VNSKFSLHVQELA VRNSMKAWENNLTLPLGIDIFWVEGGGD APRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDDTGFSLYPLRDGGSCGSGL FSASGGEDHAG SGRKSTSCY FKPLKAPHGSVKVICHYRRGVDSKAYQHGQT+T TAAPDMTTSLIPDYVTDEYERNAAASRMPA EVNHDWPKLPSTPEDGAS PDGAVDAYGQHAGNKVSKENTSMMHWPSPELGHGYAEK+THIGPRQGPAPFLTPGPHRGRPLG HDVMMEPLELGPNAEIHARGPP  PAPPVRQENEDLIRVSAQTLSGASGRTESNHVDS CSNG+
Sbjct:    1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLIQPQRREVNSKFSLHVQELAFVRNSMKAWENNLTLPLGIDIFWVEGGGDGAPRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDDTGFSLYPLRDGGSCGSGLDFSASGGEDHAGRSGRKSTSCYTFKPLKAPHGSVKVICHYRRGVDSKAYQHGQTNTVTAAPDMTTSLIPDYVTDEYERNAAASRMPATEVNHDWPKLPSTPEDGASVPDGAVDAYGQHAGNKVSKENTSMMHWPSPELGHGYAEKRTHIGPRQGPAPFLTPGPHRGRPLGRHDVMMEPLELGPNAEIHARGPPHFPAPPVRQENEDLIRVSAQTLSGASGRTESNHVDSHCSNGM 403
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW66_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 1.830e-15
Identity = 57/155 (36.77%), Postives = 85/155 (54.84%), Query Frame = 1 
Query:   13 RSKCEQVVYELLCKVAELVVSSRVSL---VQPQRRDVNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRELLERWEIMYEAQDAAEGKS--------------------AQLRHFFKRSIILLRTLYSLVRLLPAYSVHKR 408
            R+K +QVV E L K AEL++ SRV+       +R +  ++F+L ++E+  VR++M AW  ++ LPL I I+   GG D   +R LLE+W +MY A D  +  S                     QL+   K+  +LLR LYS +RLLPA+ + KR
Sbjct:    1 RAKTDQVVLEFLYKAAELIIQSRVNFQSEADHRRGNRRARFNLDIEEVQFVRDAMLAWREDVHLPLTIGIYLDSGGDD---QRVLLEQWSVMY-APDGGDADSYSGLRRNSSSHLTGAARDVIQQLKEVCKKISVLLRALYSFMRLLPAHRLFKR 151
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNL2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.760e-15
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 1 
Query:    4 SSDRSKCEQVVYELLCKVAELVVSSRV-SLVQPQRRDVNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDA------APRRELLERWEIMYEAQDAA------EGKSAQLRHFFKRSIILLRTLYSLVRLLPA 390
            +S  SKCEQV++E + K AE+V+ +R+ S  Q  RR    +F++ V E+ +VR  M+ W  +L LPL I I W E             +  LLERW+I +E   A+      E    Q+R  +KR +ILLRTLYS + LLPA
Sbjct:    4 NSAASKCEQVMFEAVAKAAEIVLLNRIHSPSQLGRRLGRQRFNMDVDEVDVVRGMMEYWRRDLHLPLRILIVWRENNSTEKKNILQGTKPRLLERWDIQFELASASLSGPNEEELLVQVRSVWKRVVILLRTLYSRMLLLPA 145
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: ATG13 (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV64_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.190e-12
Identity = 71/243 (29.22%), Postives = 115/243 (47.33%), Query Frame = 1 
Query:    1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQPQRRDVNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRELLERWEIMYEAQDAAEGKSA---QLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDDTGFSLYPLRDGGSCGSGLGFSASGGED---HAGHSGRKSTSCYAFKPLKAPHGSVKVICHYRRGVDS--KAYQHGQTSTHTAAPDMTTSL 705
            +S+ + K +QVV E L K  E+V+ SR        R   ++F+L +QEL  VR++M+ +++N+T P+ +DIF             LLERW I Y +   A+       QLR   +R  ILLR +Y L R+LPA+ V  R++++       ++D G  L  L+            A G  D          +    Y+F P+  P G++++   YR+  D    A +    + H  A   TT++
Sbjct:   40 VSTGKKKTDQVVLEFLYKTVEVVLLSRAYFQPSTPR--RARFNLDIQELVHVRDAMRMYKDNVTQPVLVDIFM---------GATLLERWHISYTSGMQAQSPVDVINQLREVCRRIGILLRAVYCLARILPAFPVGDRLKTQ-------QEDLGHPLVGLQ-----------YAIGSVDTDMQVQFDAAEPKQRYSFVPIDTPFGTLQLSVLYRKRNDDLLAAIEQMAVADHPTAAATTTTI 253
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: Aste57867_23525 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LN19_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.160e-12
Identity = 66/218 (30.28%), Postives = 105/218 (48.17%), Query Frame = 1 
Query:    1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQPQRRDVNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRELLERWEIMYEAQDAAEGKSA-----QLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDDTGFSLYPLRDGGSCGSGLGFSASGGEDHAGHSGRKSTSCYAFKPLKAPHGSVKVICHYRRGVD 639
            +S+ + K +QVV E L K  E+V+ SR        R   ++F+L +QEL  VR S++ + +N+  PL +DIF             LLERW I Y +    + KS      QLR   +R  ILLRT+Y LVR+LPA+ V  R++++       ++D G  +  L+            A   +        +    Y+F P++ P G +++   YR+  D
Sbjct:   38 LSTGQKKTDQVVLEFLYKTVEVVLLSRAYFQPTTPR--RARFNLDIQELTHVRESLRPYRDNVGQPLFLDIFMGS---------TLLERWHISYTS--GMQSKSPVDVINQLREVCRRIGILLRTVYCLVRILPAFPVGTRLKTQ-------QEDLGHVVAGLQ--------YAVGAVDADMRQQFDAAEPKQRYSFVPIETPFGMIQLSVLYRKRND 227
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NID3_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 3.470e-12
Identity = 42/140 (30.00%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:   13 RSKCEQVVYELLCKVAELVVSSRVSLVQPQRRD------VNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAA---PRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHK 405
            R+K EQ+V EL  K+ ++++ SR+ +VQ   ++      +N  F+L ++E+  +   +  W  N+ +PL I +F+    G A      R +LE+W+I  E     + ++ ++   +KR ++L+R+LYS +R++P YSV +
Sbjct:   13 RTKTEQIVRELYVKLTQVILQSRIPMVQQAAKNGTGKVKINKWFNLELEEVENITQELTPWRQNMYIPLCIKVFFNSSRGMAQHPYEERVMLEKWKIQLEPH-TGQRENVEVPVLYKRLVLLVRSLYSYLRVVPTYSVFR 151
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.670e-12
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  166 MKAWENNLTLPLGIDIFWVEGGG-DAAPRRELLERWEI 276
            MKAWE +LTLPLGIDIFWVEGGG D AP RELLERWEI
Sbjct:    1 MKAWEKDLTLPLGIDIFWVEGGGGDGAPGRELLERWEI 38
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: autophagy-related (protein 13a-like isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB13415)

HSP 1 Score: 77.0 bits (188), Expect = 1.460e-11
Identity = 53/176 (30.11%), Postives = 84/176 (47.73%), Query Frame = 1 
Query:    4 SSDRSKCEQVVYELLCKVAELVVSSRVSLVQ----------PQRRDVNSKFSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRE---------------LLERWEIMYEA------QDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLAD 438
            S+D  + EQ+V + L K   +++ SR+  V           P ++  N  F+L + +   V +++  W  NL  P+ IDI  V+   D++ R                 LLERW + YE       Q   E  S+  +  +K+ IILLRTLYS +R+LPAY   +++ S+ V   D
Sbjct:    8 SADHGRFEQIVSQFLIKSLHMILDSRIPSVHHHNGEYFSSIPSKKS-NRWFNLLLGDRPPVLDNLSFWHRNLVQPMIIDIILVQEMTDSSSRSNHTLSAAFESGKSVETLLERWTVQYEYSKSMFHQFGVESSSSSYKKMYKKLIILLRTLYSTMRMLPAYRPFRKLSSKSVETCD 182
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: Uncharacterized (protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RDE6_KALFE)

HSP 1 Score: 75.1 bits (183), Expect = 6.550e-11
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 1 
Query:    4 SSDRSKCEQVVYELLCKVAELVVSSRVSLVQPQRRDVN----SK-------FSLHVQELALVRNSMKAWENNLTLPLGIDIFWVE---GGGDAAPRRELLERWEIMYEAQDAA-------EGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQS 417
            + D ++ EQ+V + L K   +V+SSR+  +  + RD      SK       F L + E     +++  W  NL  P+ ID+  V    G   A     ++ERW I YE Q  A       E  SA  +  +K++I++LR+LYS +RLLP+Y + +++ S
Sbjct:   11 NQDLARLEQIVSQFLLKSLHIVLSSRIPSIGARERDSQLSGPSKVTKSDKWFGLALGERPAALDNLSFWHRNLADPMVIDVVLVHEDVGSFSADKVETVVERWVIQYECQRMAPLSTRMGESSSAAFKRVYKKTILMLRSLYSTMRLLPSYKLFRKLTS 169
[Close]
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Match: ATG13 (domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E0K3_9ASTE)

HSP 1 Score: 74.7 bits (182), Expect = 8.130e-11
Identity = 44/143 (30.77%), Postives = 76/143 (53.15%), Query Frame = 1 
Query:   10 DRSKCEQVVYELLCKVAELVVSSRVSLVQPQRRDVNSK-----FSLHVQELALVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRELLERWEIMYEAQ--DAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQS 417
            +  + EQ+V + L K   +V+ SRV  ++   R    K     F+L + +      ++ +W  NLT P+ IDI  V+    +     ++ERW + YE +    ++G  +  +  +K+ IILLR+LYS+ +LLPAY   K++ S
Sbjct:   10 EHGRFEQIVSQFLSKSLHIVLDSRVPSIRNHGRTGEVKKSDKWFNLVLGDRPSALENLNSWHRNLTEPMNIDIVLVKDKPGSGSSLTVIERWIVQYECRRTSISQGVDSSHKKTYKKLIILLRSLYSMTKLLPAYKAFKKLCS 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11011.898.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATG132.260e-27795.78domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.830e-1536.77protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Hypothetical7.760e-1540.14protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
ATG131.190e-1229.22domain-containing protein n=1 Tax=Aphanomyces eute... [more]
Aste57867_235252.160e-1230.28protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized3.470e-1230.00protein n=1 Tax=Planoprotostelium fungivorum TaxID... [more]
Uncharacterized4.670e-1286.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
autophagy-related1.460e-1130.11protein 13a-like isoform X1 n=2 Tax=Impatiens glan... [more]
Uncharacterized6.550e-1131.45protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787... [more]
ATG138.130e-1130.77domain-containing protein n=3 Tax=Cuscuta sect. Cl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11011contigEcto-sp9_F_contig11011:946..4012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score775.0
Seed ortholog evalue1.7e-221
Seed eggNOG ortholog2880.D7FKW0
Preferred nameATG13
KEGG koko:K08331
KEGG Pathwayko04136,ko04138,ko04140,ko04211,map04136,map04138,map04140,map04211
GOsGO:0000045,GO:0000407,GO:0000422,GO:0001932,GO:0001934,GO:0002790,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0006810,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009306,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016236,GO:0016237,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019898,GO:0022411,GO:0022607,GO:0030234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032258,GO:0032268,GO:0032270,GO:0032940,GO:0032991,GO:0033036,GO:0033365,GO:0033674,GO:0034497,GO:0034613,GO:0034727,GO:0042325,GO:0042327,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045859,GO:0045860,GO:0045937,GO:0046903,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0060255,GO:0061695,GO:0061726,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072665,GO:0080090,GO:0098772,GO:1902494,GO:1902554,GO:1902911,GO:1903008,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG4573@1,KOG4573@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size1212
Cds size1212
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11011.898.1prot_Ecto-sp9_F_contig11011.898.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11011 946..4012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928337.1179812-CDS-Ecto-sp9_F_contig11011:945..10681622928337.1179812-CDS-Ecto-sp9_F_contig11011:945..1068Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 946..1068 +
1692277838.5188634-CDS-Ecto-sp9_F_contig11011:945..10681692277838.5188634-CDS-Ecto-sp9_F_contig11011:945..1068Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 946..1068 +
1622928337.1326754-CDS-Ecto-sp9_F_contig11011:1283..14381622928337.1326754-CDS-Ecto-sp9_F_contig11011:1283..1438Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 1284..1438 +
1692277838.5293522-CDS-Ecto-sp9_F_contig11011:1283..14381692277838.5293522-CDS-Ecto-sp9_F_contig11011:1283..1438Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 1284..1438 +
1622928337.147018-CDS-Ecto-sp9_F_contig11011:2204..23221622928337.147018-CDS-Ecto-sp9_F_contig11011:2204..2322Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 2205..2322 +
1692277838.5371466-CDS-Ecto-sp9_F_contig11011:2204..23221692277838.5371466-CDS-Ecto-sp9_F_contig11011:2204..2322Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 2205..2322 +
1622928337.1572309-CDS-Ecto-sp9_F_contig11011:2688..29371622928337.1572309-CDS-Ecto-sp9_F_contig11011:2688..2937Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 2689..2937 +
1692277838.5445623-CDS-Ecto-sp9_F_contig11011:2688..29371692277838.5445623-CDS-Ecto-sp9_F_contig11011:2688..2937Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 2689..2937 +
1622928337.170107-CDS-Ecto-sp9_F_contig11011:3099..34671622928337.170107-CDS-Ecto-sp9_F_contig11011:3099..3467Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 3100..3467 +
1692277838.5520535-CDS-Ecto-sp9_F_contig11011:3099..34671692277838.5520535-CDS-Ecto-sp9_F_contig11011:3099..3467Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 3100..3467 +
1622928337.1897829-CDS-Ecto-sp9_F_contig11011:3813..40121622928337.1897829-CDS-Ecto-sp9_F_contig11011:3813..4012Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 3814..4012 +
1692277838.5598915-CDS-Ecto-sp9_F_contig11011:3813..40121692277838.5598915-CDS-Ecto-sp9_F_contig11011:3813..4012Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11011 3814..4012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11011.898.1

>prot_Ecto-sp9_F_contig11011.898.1 ID=prot_Ecto-sp9_F_contig11011.898.1|Name=mRNA_Ecto-sp9_F_contig11011.898.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=404bp
MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQPQRRDVNSKFSLHVQELA
LVRNSMKAWENNLTLPLGIDIFWVEGGGDAAPRRELLERWEIMYEAQDAA
EGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDD
TGFSLYPLRDGGSCGSGLGFSASGGEDHAGHSGRKSTSCYAFKPLKAPHG
SVKVICHYRRGVDSKAYQHGQTSTHTAAPDMTTSLIPDYVTDEYERNAAA
SRMPAAEVNHDWPKLPSTPEDGASGPDGAVDAYGQHAGNKVSKENTSMMH
WPSPELGHGYAEKQTHIGPRQGPAPFLTPGPHRGRPLGHDVMMEPLELGP
NAEIHARGPPLLPAPPVRQENEDLIRVSAQTLSGASGRTESNHVDSRCSN
GVS*
back to top

mRNA from alignment at Ecto-sp9_F_contig11011:946..4012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11011.898.1 ID=mRNA_Ecto-sp9_F_contig11011.898.1|Name=mRNA_Ecto-sp9_F_contig11011.898.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3067bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11011:946..4012+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCAGCGATAGGTCCAAATGCGAACAAGTTGTCTATGAGCTGCTCTG
CAAGGTCGCAGAACTTGTCGTTTCCAGCAGAGTTTCGCTAGTTCAACCAC
AGCGACGCGACGTCAACAGCAAGGTGAGACCGCTGCAAGTGCTAGAAGTG
CCACACCTTGGCTCCATTGGTGAGCGTCAGCCCACGCTTGGGCTATAGGG
ATGTGGGAATTAACAAGAAATTGGACTTTGAACCGGTATGTGTACACACA
TCATTGAGACGCTGAGGGATGGGAGTCCTCCCCAAGTTTACACCCTTCGC
TCGTCGATCGTATCCTCGTGCGTTGTTTCGTCAAGCAGTTCTCTCTGCAC
GTACAAGAGCTAGCGCTTGTGAGAAACTCCATGAAAGCATGGGAAAACAA
CCTCACGCTGCCTCTTGGCATTGACATATTTTGGGTAGAGGGTGGAGGAG
ACGCGGCCCCTCGCCGCGAGCTGCTGGAGCGATGGGAGATCATGTGCGTC
GTTGCGTACTGGGCATGCCGTCTGCCCTTTCGGAGGTTTCTTAGTAGAAG
TCACAGCAAAGCTGGTCAAGCTGAGGGAATGGTGGTTCAATTTCAGCCTC
GAACGTAGCACACCGTTGTTATCCCATGCATAGGACGAACTGGATTGCGA
AGATTGGTGCACTCGAGGGAGGTAAAGTGCTCCGTGCGACCCTCATGAAT
TTTGAGTTCGTAGCAGGCGAACGCGAAGCAGGAAGGCGTGTGGGGCCTAG
CGGAGAATGTTCTTTGAAGACGGATCATCAATTCCATGCTGTAGGCACAT
GATGGCGAATTTGATACGTGGAATCTGCATGTGTGCCTGTGCGTTTGCGT
TTTGTCGTTGTGTCTCTCTCTTTTTCCTGTCTCTTGTTCTCGTTCTCCCT
CTCTCCTGTCTGTCGTGTGTGTGTTGACCCTCACATATTCTCAAAGACCG
CTGTAGTTGTTCACACACACCCTCCACCGTTCACATCTCGATCGTAACCG
GGGGTTGTGAGAACGGGGCGATACGTGCAAGAAAAGCTCTTGACACTCAA
TTGATGGCCCAAGTCATCATTTTCGGAATCGGCACACTTTGGGGCGTGAA
GCAATCGATCTATTTTTGACAGCAGTCCCTCTACAGTATGGGGCGTGCGA
TGACTCGTAGTCTGACGGCACTTGCTCAACGGGAACATAGTGTCATGAAT
AGCCCGCTGGTCTCGAAAGCAGGAAGCATCAAGTTATCCGAATGTTTGTG
CCGTGGCAGGTACGAGGCGCAAGATGCGGCAGAGGGCAAATCTGCTCAGC
TGAGGCACTTCTTCAAACGATCCATCATCCTTCTTCGCACTCTTTACTCT
CTCGTGCGGTTGCTGCCAGCTTACAGCGTGAGTGGGAGCCAATGTTTTTG
AGAGTTATCTGCACGAATGCGTGGTCTGTTTGGGTGATAATGGTTACGAT
ATGATACAGATTTCCAAATCCCACAAACTGAGTACGAGACACCTCCAACA
TTGGCTTTGTTCAACCAGAGGTCAACAGGTCTCCTCCACTGTCAAACACC
GAATCCACAGCGATACAAGTCATCCGGAACACACATCTTGTACTCAGGCA
ATAGCCATGGCCCAAACATGCCCCGTGGGCGTGGTGTCCGCACGAACAGC
TTCCCTAACAATGGCGCCTGAAAATGGCGATATCTGAGGAACCTGGCTGA
AATACGCAGCTCGCCTCCCGCCATCCTGTTGGTTTTGGCATAGGTTCACA
AACGGATCCAGAGCAGGGACGTGTCTTTGGCAGATTCAAGAGACGACACG
GGTTTCTCCCTGTACCCCTTGCGTGATGGAGGTAGCTGCGGTTCAGGTCT
GGGCTTCAGCGCTAGTGGCGGAGAAGACCATGCAGGTCACAGTGGCCGGA
AGTCGACGAGCTGCTACGCCTTCAAGCCTTTAAAGGCACCACACGGCAGT
GTGAAGGTCATCTGTCACTACCGAAGAGGTGTGGATTCGAAGGTGCGCTG
GGTTTAGAGTACCAAACGACGCGCTTTTATCCGTGTCATCGCGCACGCGT
TTCTCACCTGTTCTGATGGCATGGCGTGCGCCTGTCAACTACTGTTCGTT
GGTATCATTCTGACAAGCGTCTTGTTCCTATCCACCTATATGACTCTTCG
TCAGGCTTATCAGCACGGACAAACCAGCACCCATACTGCAGCGCCCGATA
TGACCACTTCGCTCATCCCGGACTATGTAACGGACGAGTATGAGAGAAAC
GCCGCAGCCTCGAGGATGCCAGCAGCGGAAGTGAACCACGACTGGCCAAA
GCTGCCCAGCACGCCTGAAGACGGAGCGTCCGGGCCGGACGGTGCTGTCG
ATGCGTATGGCCAGCACGCCGGGAATAAAGTCTCGAAAGAGAATACTTCT
ATGATGCATTGGCCCTCTCCGGAACTGGGGCATGGGTACGCGGAGAAGCA
AACACACATTGGACCACGCCAGGGTCCAGCACCGTTTTTGACTCCTGGGC
CACATCGCGGACGGCCGCTTGGGTGAGAAAATGCTCTCTCTCTGTTTTAT
GTATACGGCCAAAATCAGGATCCATTGCTGTATTATGTAATATGTTATGT
CCTTCGTAAAACACTGGCATGTATCGATCTGTGATAGCTTGTGTATGGAA
CAGCTGTGCAAGTTTGGGCTTGAGTAGCTTGAGGAACGGAATATGTGATA
TATCATTCTGTGTTATCTTGCGCTGTTCATCGAGGGCGGTCTCTGCACTT
TGGGTTCATAGCTGTCTCTCATACACTTTGCAGTGAAATGCAGCAACGTC
CATGCAGTGTAGAGCTACTGTGAAAATTGATGAACGTTGCTGCATGATTC
ATTTTCAAATTTTACAAGGCACGACGTCATGATGGAGCCACTGGAGTTGG
GGCCAAACGCTGAAATCCATGCTCGAGGGCCCCCGCTTTTACCAGCTCCT
CCTGTGCGGCAGGAAAACGAAGATCTCATACGCGTTTCTGCACAAACCCT
ATCTGGTGCCAGCGGACGCACGGAGTCGAACCATGTGGATTCTCGTTGCA
GCAATGGGGTAAGCTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11011:946..4012+

>mRNA_Ecto-sp9_F_contig11011.898.1 ID=mRNA_Ecto-sp9_F_contig11011.898.1|Name=mRNA_Ecto-sp9_F_contig11011.898.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2424bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11011:946..4012+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCAGCGATAGGTCCAAATGCGAACAAGTTGTCTATGAGCTGCTCTG
CAAGGTCGCAGAACTTGTCGTTTCCAGCAGAGTTTCGCTAGTTCAACCAC
AGCGACGCGACGTCAACAGCAAGATGAGCAGCGATAGGTCCAAATGCGAA
CAAGTTGTCTATGAGCTGCTCTGCAAGGTCGCAGAACTTGTCGTTTCCAG
CAGAGTTTCGCTAGTTCAACCACAGCGACGCGACGTCAACAGCAAGTTCT
CTCTGCACGTACAAGAGCTAGCGCTTGTGAGAAACTCCATGAAAGCATGG
GAAAACAACCTCACGCTGCCTCTTGGCATTGACATATTTTGGGTAGAGGG
TGGAGGAGACGCGGCCCCTCGCCGCGAGCTGCTGGAGCGATGGGAGATCA
TTTCTCTCTGCACGTACAAGAGCTAGCGCTTGTGAGAAACTCCATGAAAG
CATGGGAAAACAACCTCACGCTGCCTCTTGGCATTGACATATTTTGGGTA
GAGGGTGGAGGAGACGCGGCCCCTCGCCGCGAGCTGCTGGAGCGATGGGA
GATCATGTACGAGGCGCAAGATGCGGCAGAGGGCAAATCTGCTCAGCTGA
GGCACTTCTTCAAACGATCCATCATCCTTCTTCGCACTCTTTACTCTCTC
GTGCGGTTGCTGCCAGCTTACAGCGTACGAGGCGCAAGATGCGGCAGAGG
GCAAATCTGCTCAGCTGAGGCACTTCTTCAAACGATCCATCATCCTTCTT
CGCACTCTTTACTCTCTCGTGCGGTTGCTGCCAGCTTACAGCGTTCACAA
ACGGATCCAGAGCAGGGACGTGTCTTTGGCAGATTCAAGAGACGACACGG
GTTTCTCCCTGTACCCCTTGCGTGATGGAGGTAGCTGCGGTTCAGGTCTG
GGCTTCAGCGCTAGTGGCGGAGAAGACCATGCAGGTCACAGTGGCCGGAA
GTCGACGAGCTGCTACGCCTTCAAGCCTTTAAAGGCACCACACGGCAGTG
TGAAGGTCATCTGTCACTACCGAAGAGGTGTGGATTCGAAGGTTCACAAA
CGGATCCAGAGCAGGGACGTGTCTTTGGCAGATTCAAGAGACGACACGGG
TTTCTCCCTGTACCCCTTGCGTGATGGAGGTAGCTGCGGTTCAGGTCTGG
GCTTCAGCGCTAGTGGCGGAGAAGACCATGCAGGTCACAGTGGCCGGAAG
TCGACGAGCTGCTACGCCTTCAAGCCTTTAAAGGCACCACACGGCAGTGT
GAAGGTCATCTGTCACTACCGAAGAGGTGTGGATTCGAAGGCTTATCAGC
ACGGACAAACCAGCACCCATACTGCAGCGCCCGATATGACCACTTCGCTC
ATCCCGGACTATGTAACGGACGAGTATGAGAGAAACGCCGCAGCCTCGAG
GATGCCAGCAGCGGAAGTGAACCACGACTGGCCAAAGCTGCCCAGCACGC
CTGAAGACGGAGCGTCCGGGCCGGACGGTGCTGTCGATGCGTATGGCCAG
CACGCCGGGAATAAAGTCTCGAAAGAGAATACTTCTATGATGCATTGGCC
CTCTCCGGAACTGGGGCATGGGTACGCGGAGAAGCAAACACACATTGGAC
CACGCCAGGGTCCAGCACCGTTTTTGACTCCTGGGCCACATCGCGGACGG
CCGCTTGGGCTTATCAGCACGGACAAACCAGCACCCATACTGCAGCGCCC
GATATGACCACTTCGCTCATCCCGGACTATGTAACGGACGAGTATGAGAG
AAACGCCGCAGCCTCGAGGATGCCAGCAGCGGAAGTGAACCACGACTGGC
CAAAGCTGCCCAGCACGCCTGAAGACGGAGCGTCCGGGCCGGACGGTGCT
GTCGATGCGTATGGCCAGCACGCCGGGAATAAAGTCTCGAAAGAGAATAC
TTCTATGATGCATTGGCCCTCTCCGGAACTGGGGCATGGGTACGCGGAGA
AGCAAACACACATTGGACCACGCCAGGGTCCAGCACCGTTTTTGACTCCT
GGGCCACATCGCGGACGGCCGCTTGGGCACGACGTCATGATGGAGCCACT
GGAGTTGGGGCCAAACGCTGAAATCCATGCTCGAGGGCCCCCGCTTTTAC
CAGCTCCTCCTGTGCGGCAGGAAAACGAAGATCTCATACGCGTTTCTGCA
CAAACCCTATCTGGTGCCAGCGGACGCACGGAGTCGAACCATGTGGATTC
TCGTTGCAGCAATGGGGTAAGCTGAGCACGACGTCATGATGGAGCCACTG
GAGTTGGGGCCAAACGCTGAAATCCATGCTCGAGGGCCCCCGCTTTTACC
AGCTCCTCCTGTGCGGCAGGAAAACGAAGATCTCATACGCGTTTCTGCAC
AAACCCTATCTGGTGCCAGCGGACGCACGGAGTCGAACCATGTGGATTCT
CGTTGCAGCAATGGGGTAAGCTGA
back to top