mRNA_Ecto-sp9_F_contig11000.889.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11000.889.1
Unique NamemRNA_Ecto-sp9_F_contig11000.889.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11000.889.1 vs.
Match: RanBD1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.890e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 MAAMATELDKEFGRLLESHRDVPDATVMTPIKDPSFAVLTCPLDQVLAASMLGVLSTEPQ 180
            MAAMATELDKEFGRLLESHRDVPDA VMTPIKDPSFAVLTCPLDQVLAASMLGVLSTEPQ
Sbjct:    1 MAAMATELDKEFGRLLESHRDVPDAAVMTPIKDPSFAVLTCPLDQVLAASMLGVLSTEPQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11000.889.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
RanBD16.890e-3098.33domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11000contigEcto-sp9_F_contig11000:2777..2968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue6.1e-25
Seed eggNOG ortholog2880.D8LNF2
KEGG koko:K15304,ko:K20282
KEGG Pathwayko05166,map05166
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033044,GO:0033157,GO:0033365,GO:0033554,GO:0033750,GO:0034504,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060341,GO:0060968,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0090316,GO:1901181,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsCOG5171@1,KOG0864@2759,KOG2207@1,KOG2207@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002330.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928335.6791797-CDS-Ecto-sp9_F_contig11000:2776..29681622928335.6791797-CDS-Ecto-sp9_F_contig11000:2776..2968Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 2777..2968 -
1692277838.070556-CDS-Ecto-sp9_F_contig11000:2776..29681692277838.070556-CDS-Ecto-sp9_F_contig11000:2776..2968Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 2777..2968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11000.889.1prot_Ecto-sp9_F_contig11000.889.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11000 2777..2968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11000.889.1

>prot_Ecto-sp9_F_contig11000.889.1 ID=prot_Ecto-sp9_F_contig11000.889.1|Name=mRNA_Ecto-sp9_F_contig11000.889.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=64bp
MAAMATELDKEFGRLLESHRDVPDATVMTPIKDPSFAVLTCPLDQVLAAS
MLGVLSTEPQARW*
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mRNA from alignment at Ecto-sp9_F_contig11000:2777..2968-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11000.889.1 ID=mRNA_Ecto-sp9_F_contig11000.889.1|Name=mRNA_Ecto-sp9_F_contig11000.889.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11000:2777..2968- (Ectocarpus species9 EcSCA_722f female)
ATGGCGGCAATGGCGACCGAGCTCGACAAAGAGTTCGGCAGGTTGCTGGA
GTCGCACCGAGATGTGCCGGACGCGACGGTAATGACGCCAATCAAAGACC
CTTCTTTTGCGGTCCTGACTTGCCCCCTTGATCAAGTCCTGGCGGCTTCG
ATGTTGGGGGTGCTCAGCACCGAGCCACAGGCAAGATGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11000:2777..2968-

>mRNA_Ecto-sp9_F_contig11000.889.1 ID=mRNA_Ecto-sp9_F_contig11000.889.1|Name=mRNA_Ecto-sp9_F_contig11000.889.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11000:2777..2968- (Ectocarpus species9 EcSCA_722f female)
ATGGCGGCAATGGCGACCGAGCTCGACAAAGAGTTCGGCAGGTTGCTGGA
GTCGCACCGAGATGTGCCGGACGCGACGGTAATGACGCCAATCAAAGACC
CTTCTTTTGCGGTCCTGACTTGCCCCCTTGATCAAGTCCTGGCGGCTTCG
ATGTTGGGGGTGCTCAGCACCGAGCCACAGGCAAGATGGTAAATGGCGGC
AATGGCGACCGAGCTCGACAAAGAGTTCGGCAGGTTGCTGGAGTCGCACC
GAGATGTGCCGGACGCGACGGTAATGACGCCAATCAAAGACCCTTCTTTT
GCGGTCCTGACTTGCCCCCTTGATCAAGTCCTGGCGGCTTCGATGTTGGG
GGTGCTCAGCACCGAGCCACAGGCAAGATGGTAA
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