mRNA_Ecto-sp9_F_contig11000.888.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11000.888.1
Unique NamemRNA_Ecto-sp9_F_contig11000.888.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11000.888.1 vs.
Match: RanBD1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 345 bits (885), Expect = 1.370e-112
Identity = 211/232 (90.95%), Postives = 212/232 (91.38%), Query Frame = 1 
Query:    1 NHKPKNLPFTVVQRKLASAMKSFLATERQAPAARRAVVTASLSVFRHSCAVTVPAKLSGMAAHALLRALASATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGATGGSLVLGTEGFPESQVAAFLLDVTRVEPPPPXTPPVAVPADVALKIISAFGVGKAGGKGESHSLQWGDPSVADSLRGSVRRVANRLQREGKWGLVSELVEHMETRGGVEECEGVLGMKLGEV 696
            NHKPKNLPFTVVQRKLASAMK FLATER APAARRAVVTASLSVFRHSCAVTVPAKLSGMAAHALLRAL S T   XXXXXXXXXXXXXXXXXXX          STGATGGSLVLGTEGFPESQVAAFLLDVTRVEPPPPXTPPVAVPADVALKIISAFGVGKAG KGE HSL+WG PSVADSLRGSVRRVANRLQREGKWGLVSELVEHMETRGGVEECEGVLGMKLGEV
Sbjct:   61 NHKPKNLPFTVVQRKLASAMKLFLATERLAPAARRAVVTASLSVFRHSCAVTVPAKLSGMAAHALLRALVSVTTGTXXXXXXXXXXXXXXXXXXXHRHRSRSP--STGATGGSLVLGTEGFPESQVAAFLLDVTRVEPPPPXTPPVAVPADVALKIISAFGVGKAGRKGEGHSLEWGGPSVADSLRGSVRRVANRLQREGKWGLVSELVEHMETRGGVEECEGVLGMKLGEV 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11000.888.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
RanBD11.370e-11290.95domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11000contigEcto-sp9_F_contig11000:268..1984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.1
Seed ortholog evalue2.5e-92
Seed eggNOG ortholog2880.D8LNF2
KEGG koko:K15304,ko:K20282
KEGG Pathwayko05166,map05166
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033044,GO:0033157,GO:0033365,GO:0033554,GO:0033750,GO:0034504,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060341,GO:0060968,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0090316,GO:1901181,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsCOG5171@1,KOG0864@2759,KOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size696
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11000.888.1prot_Ecto-sp9_F_contig11000.888.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11000 268..1984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928335.6174636-CDS-Ecto-sp9_F_contig11000:267..4981622928335.6174636-CDS-Ecto-sp9_F_contig11000:267..498Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 268..498 -
1692277838.0405943-CDS-Ecto-sp9_F_contig11000:267..4981692277838.0405943-CDS-Ecto-sp9_F_contig11000:267..498Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 268..498 -
1622928335.630636-CDS-Ecto-sp9_F_contig11000:1006..12151622928335.630636-CDS-Ecto-sp9_F_contig11000:1006..1215Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 1007..1215 -
1692277838.0501063-CDS-Ecto-sp9_F_contig11000:1006..12151692277838.0501063-CDS-Ecto-sp9_F_contig11000:1006..1215Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 1007..1215 -
1622928335.642153-CDS-Ecto-sp9_F_contig11000:1728..19841622928335.642153-CDS-Ecto-sp9_F_contig11000:1728..1984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 1729..1984 -
1692277838.0607376-CDS-Ecto-sp9_F_contig11000:1728..19841692277838.0607376-CDS-Ecto-sp9_F_contig11000:1728..1984Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11000 1729..1984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11000.888.1

>prot_Ecto-sp9_F_contig11000.888.1 ID=prot_Ecto-sp9_F_contig11000.888.1|Name=mRNA_Ecto-sp9_F_contig11000.888.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=232bp
NHKPKNLPFTVVQRKLASAMKSFLATERQAPAARRAVVTASLSVFRHSCA
VTVPAKLSGMAAHALLRALASATTATTTNGSAGAAGGSKKHHNNNHRHRS
RSPPPSTGATGGSLVLGTEGFPESQVAAFLLDVTRVEPPPPPTPPVAVPA
DVALKIISAFGVGKAGGKGESHSLQWGDPSVADSLRGSVRRVANRLQREG
KWGLVSELVEHMETRGGVEECEGVLGMKLGEV
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mRNA from alignment at Ecto-sp9_F_contig11000:268..1984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11000.888.1 ID=mRNA_Ecto-sp9_F_contig11000.888.1|Name=mRNA_Ecto-sp9_F_contig11000.888.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1717bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11000:268..1984- (Ectocarpus species9 EcSCA_722f female)
AACCACAAACCGAAGAACCTTCCGTTCACGGTGGTCCAGCGTAAGCTCGC
GTCCGCCATGAAATCGTTCCTGGCGACGGAACGGCAGGCCCCGGCCGCGC
GCCGGGCGGTCGTGACGGCCTCGCTCAGCGTCTTCCGCCACTCTTGCGCG
GTGACCGTGCCGGCCAAGCTGTCGGGCATGGCGGCGCACGCGTTGCTGCG
CGCGCTGGCCTCCGCGACTACCGCGACGACAACCAACGGCAGCGCCGGCG
CAGCAGGTGCGATGCCGTCGGCAGCAGTGGGTGGTGTCACGAGAGTCGTG
GTCGTGCCGCAAGCTCGGCTTGGGTGGTTGTGTCCGGCGACGTTTGTGCG
AGACTCGTAGGACACGGCTTGACGTAAACCGAACAATCGCCCGATCGTTG
TCGTAGCCTCGAGCGCTGATTTGACGGATTGTGCTTTCCCTCTCGCTTTT
GGTTGAACTTGCGAAACTGGGTGCAAGTGAGATGTTGATTGGTCAGTCTA
GAAGGGAAACAAATGGTACGTCGCTAGTCTTTAGGGTTTGCCGATGAAGA
TTGGTCTATCAGGTGTTGGTTGGCCGGGCGTCTTGGCCCGTCTTCATACT
TGCTTGCATTCAATGCGATGTGTGGATTGGGAGCTAGGACGCATTCTAAG
TGTTAGGCTTCTACGGAAGGCAAGGGGGTTCCGCATGATGAAACATGTGG
GTGCCTGGTGTGAATGGCCGAGGGTTCGCCCGCGTCTCTCCCGCGCATGC
ATCCTCCTCCGGGACACAGGGGGAAGCAAGAAGCACCACAACAACAACCA
CCGCCATCGCAGCCGTTCGCCACCTCCATCGACCGGTGCGACAGGGGGCA
GCTTGGTGCTGGGAACGGAAGGGTTCCCGGAGTCGCAAGTCGCGGCGTTC
TTGTTGGACGTGACCCGGGTAGAGCCGCCGCCGCCACCGACGCCGCCCGT
CGCGGTGCCGGCTGACGTCGCCCTCAAGGTGGGAGGCGAGAAGAGAGAAG
ACAGGGATATAGAACCGAGACGGACAAACGTATCTGGGGTGGTGGGGCTC
TCGGCGGGAAAGGAAGAGAGTGGGGAGCAGGGGACAAACGAGAGCTAAAT
AGATGCGTACGAATACACAAGGGGTCGAAACATCGACCGGGGGAGGACAG
ATGACCAGAAGGAAGCGAAGGGTTTCCGTTTCGTTGCGTTTGGTTCGGGA
AGCCCGGCAGCACGGGGCGTACACGAGGACGAAGATGCGTGATAAGTGGA
CACCTCCCGCCCCCATCACCGTCCCCGACCACATGCGCATGTTGCAGTTG
ACTTTGTGTTCGATCTATAGGCCAAGTCTCCCTGTGTCGATCGTTCCTCT
ACGCGAAGAGCTGTCTCTCTGCCTTAGACACGGCGCCGCCACCACCACCC
CAGCACAACAGCAGCAGTAGAGCACAACGTCAACTTCGTTACAACCTTCT
CGTTTCTTCTGTTGCGTGCGCGCGAGGGGCGCGCAGATCATTTCCGCCTT
TGGGGTCGGCAAGGCCGGCGGAAAGGGCGAGAGCCACTCGCTGCAGTGGG
GGGATCCCTCCGTGGCCGACTCCCTCCGAGGCTCGGTCCGCAGGGTGGCC
AACCGGCTGCAGCGGGAGGGGAAGTGGGGGCTGGTTTCGGAGCTGGTGGA
GCACATGGAGACCCGCGGGGGCGTGGAGGAGTGCGAGGGGGTTCTGGGGA
TGAAGCTCGGAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11000:268..1984-

>mRNA_Ecto-sp9_F_contig11000.888.1 ID=mRNA_Ecto-sp9_F_contig11000.888.1|Name=mRNA_Ecto-sp9_F_contig11000.888.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1392bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11000:268..1984- (Ectocarpus species9 EcSCA_722f female)
AACCACAAACCGAAGAACCTTCCGTTCACGGTGGTCCAGCGTAAGCTCGC
GTCCGCCATGAAATCGTTCCTGGCGACGGAACGGCAGGCCCCGGCCGCGC
GCCGGGCGGTCGTGACGGCCTCGCTCAGCGTCTTCCGCCACTCTTGCGCG
GTGACCGTGCCGGCCAAGCTGTCGGGCATGGCGGCGCACGCGTTGCTGCG
CGCGCTGGCCTCCGCGACTACCGCGACGACAACCAACGGCAGCGCCGGCG
CAGCAGAACCACAAACCGAAGAACCTTCCGTTCACGGTGGTCCAGCGTAA
GCTCGCGTCCGCCATGAAATCGTTCCTGGCGACGGAACGGCAGGCCCCGG
CCGCGCGCCGGGCGGTCGTGACGGCCTCGCTCAGCGTCTTCCGCCACTCT
TGCGCGGTGACCGTGCCGGCCAAGCTGTCGGGCATGGCGGCGCACGCGTT
GCTGCGCGCGCTGGCCTCCGCGACTACCGCGACGACAACCAACGGCAGCG
CCGGCGCAGCAGGGGGAAGCAAGAAGCACCACAACAACAACCACCGCCAT
CGCAGCCGTTCGCCACCTCCATCGACCGGTGCGACAGGGGGCAGCTTGGT
GCTGGGAACGGAAGGGTTCCCGGAGTCGCAAGTCGCGGCGTTCTTGTTGG
ACGTGACCCGGGTAGAGCCGCCGCCGCCACCGACGCCGCCCGTCGCGGTG
CCGGCTGACGTCGCCCTCAAGGGGGAAGCAAGAAGCACCACAACAACAAC
CACCGCCATCGCAGCCGTTCGCCACCTCCATCGACCGGTGCGACAGGGGG
CAGCTTGGTGCTGGGAACGGAAGGGTTCCCGGAGTCGCAAGTCGCGGCGT
TCTTGTTGGACGTGACCCGGGTAGAGCCGCCGCCGCCACCGACGCCGCCC
GTCGCGGTGCCGGCTGACGTCGCCCTCAAGATCATTTCCGCCTTTGGGGT
CGGCAAGGCCGGCGGAAAGGGCGAGAGCCACTCGCTGCAGTGGGGGGATC
CCTCCGTGGCCGACTCCCTCCGAGGCTCGGTCCGCAGGGTGGCCAACCGG
CTGCAGCGGGAGGGGAAGTGGGGGCTGGTTTCGGAGCTGGTGGAGCACAT
GGAGACCCGCGGGGGCGTGGAGGAGTGCGAGGGGGTTCTGGGGATGAAGC
TCGGAGAGGTGATCATTTCCGCCTTTGGGGTCGGCAAGGCCGGCGGAAAG
GGCGAGAGCCACTCGCTGCAGTGGGGGGATCCCTCCGTGGCCGACTCCCT
CCGAGGCTCGGTCCGCAGGGTGGCCAACCGGCTGCAGCGGGAGGGGAAGT
GGGGGCTGGTTTCGGAGCTGGTGGAGCACATGGAGACCCGCGGGGGCGTG
GAGGAGTGCGAGGGGGTTCTGGGGATGAAGCTCGGAGAGGTG
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