mRNA_Ecto-sp9_F_contig110.882.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Probable (extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI) HSP 1 Score: 719 bits (1856), Expect = 7.860e-249 Identity = 418/483 (86.54%), Postives = 425/483 (87.99%), Query Frame = 1
Query: 319 MGFTRKSARLALFFLGLAARQASAVTTCPALITAVEAISGTGTVELESGFTCESHITVAASQDVTISGAYTITLGALFAGSTNTDAGGSLFENEGTLKLDGITFATEATDGSRAVWNTGTLSVVGCTFELYPTGAFLSRGGVIYSDSAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNLDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITECTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVTDGETTVTMGEFNDMYCFANEPYECEFVYDQSTVVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGVTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 1767
MGFTRKSA LALFFLGLAARQASAVTTC ALITAVEAISGTGTVELE GFTCE++ITVAASQDVTISGAYTITLGA FAGSTNTDAGGSLFENEGTLKLDGITFATE TDG ELYPTG FLSRGGVIYSDSAGTI+ISDSTFKSNL EXXXXXXXXXXXXXXXXXXXXXXNEVGTGV ADGAG TTFSTSAAEYGG AIECCGAVIS+ FTGADT ALLVNRPDQD C R LDLSNSTFSGCTVGSTTGAGGSVAIFDTSATIT+CTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGV DGETTVTMGEFNDMYCFANEPYECEFVYDQS +VHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALG+TLVVIGALAVWKFRVRKNARRLMEDMGEGDL
Sbjct: 1 MGFTRKSAVLALFFLGLAARQASAVTTCLALITAVEAISGTGTVELEGGFTCEAYITVAASQDVTISGAYTITLGAPFAGSTNTDAGGSLFENEGTLKLDGITFATETTDGXXXXXXXXXXXXXXXXXELYPTGIFLSRGGVIYSDSAGTISISDSTFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVAADGAGGDVYAGTNVDLTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTXXXXXXXXXALLVNRPDQDGCPRELDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVADGETTVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 483
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Polymorphic (outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI) HSP 1 Score: 572 bits (1475), Expect = 3.600e-191 Identity = 343/467 (73.45%), Postives = 370/467 (79.23%), Query Frame = 1
Query: 319 MGFTRKSARLALFFLGLAARQASAVTTCPALITAVEAISGTGTVELESGFTCESHITVAASQDVTISGAYTITLGALFAGSTNTDAGGSLFENEGTLKLDGITFATEATDGSRAVWNTGTLSVVGCTFELYPTGAFLSRGGVIYSDSAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNLDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITECTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVTDGETTVTMGEFNDMYCFANEPYECEFVYDQSTVVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGVTLVV-IGALAVWKFR 1716
M +RKSA LALFFLGLAARQASAVTTCPALITAVEAISGTGT ELE FTC++HITVAASQDVTISGAYTITLG LFAGST+TDAGGSLF NEGTLKLDGITFAT ELYPTGAFLSRGGV+YSDSAGTI+ISDSTF SNL EXXXXXXXXXXXXXXXXXXXX NEVGTGVDADGAG TTFSTS AEYGG AIECCGAVISNCTF ALLVNRPDQD C R+LDLS+STFSGCTV STTGAGGSVAIFDTSATIT+CTFESSVGTAVLFSSSSDSGEHQLLM+YVQFNLNT PAEAY TDTEQGAAIVVTNTGV DGETTVTMGEF+D+YCFANEPYECEFVYDQS +VH+GEFKCQICDI+G +Q SGTD DL + ++S +S I+IGLS AL + +++ IG L ++
Sbjct: 1 MELSRKSAGLALFFLGLAARQASAVTTCPALITAVEAISGTGTAELEGSFTCDTHITVAASQDVTISGAYTITLGPLFAGSTDTDAGGSLFMNEGTLKLDGITFATXXXXXXXXXXXXXXXXXXXXXXELYPTGAFLSRGGVVYSDSAGTISISDSTFTSNLASEXXXXXXXXXXXXXXXXXXXXRGNEVGTGVDADGAGGDVYVGTNVELTVTGTTFSTSVAEYGGAAIECCGAVISNCTFXXXXXXXXXXXXXXALLVNRPDQDPCPRDLDLSDSTFSGCTVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMNYVQFNLNTLPAEAYVTDTEQGAAIVVTNTGVADGETTVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQSSSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYK 467
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Polymorphic (outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI) HSP 1 Score: 458 bits (1178), Expect = 9.430e-148 Identity = 260/388 (67.01%), Postives = 281/388 (72.42%), Query Frame = 1
Query: 439 TGTVELESGFTCESHITVAASQDVTISGAYTITLGALFAGSTNTDAGGSLFENEGTLKLDGITFATEATDGSRAVWNTGTLSVVGCTFELYPTGA--FLSRGGVIYSDSAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNLDLSNSTFSGCTVGSTTGAGGSVAIFDTSATITECTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVTDGETTVTMGEFNDMYCFANEPYECEFVYDQSTVVHSGEFKCQICDIEGERQQ-SGTDDDLID 1593
TGTVELESGFTC++HITV ASQDVTISGAYTITLGALFAGST TDAGGSLF NEGTL+LDGITFATEATDG+RAVWN EL+P+G FL+RGGVIYSDS G IAIS STFKSN+ E NEVGTGV+ GAG TTFSTSAAEY LLVNRPDQDACSR LDLS++ FSGC+V STTGAGGSVAIFDTSATIT+CTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNT PAEAYATDTEQGAAIVVTNTGV +G TTV MGEFNDMYCF N+PYECEFVYDQS +VHSGEF CQ+C I+G RQ+ SGTDDD ++
Sbjct: 4 TGTVELESGFTCDAHITVDASQDVTISGAYTITLGALFAGSTATDAGGSLFVNEGTLELDGITFATEATDGNRAVWNGXXXXXXXXXXELFPSGGGEFLARGGVIYSDSDGEIAISASTFKSNIASERGGAVYAIGSETLTITDSLFTVNEVGTGVEEGGAGGDVYAGINVELTVTGTTFSTSAAEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVNRPDQDACSRELDLSDTIFSGCSVVSTTGAGGSVAIFDTSATITDCTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTLPAEAYATDTEQGAAIVVTNTGVEEGNTTVVMGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDDDSVE 391
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q9_9PHAE) HSP 1 Score: 301 bits (772), Expect = 5.190e-91 Identity = 198/272 (72.79%), Postives = 212/272 (77.94%), Query Frame = 1
Query: 319 MGFTRKSARLALFFLGLAARQASAVTTCPALITAVEAISGTGTVELESGFTCESHITVAASQDVTISGAYTITLGALFAGSTNTDAGGSLFENEGTLKLDGITFATEATDGSRAVWNTGTLSVVGCTFELYPTGAFLSRGGVIYSDSAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNL 1134
MGFT K+A LAL FLGLAARQASAVT+C LITAVEAIS TGT+ELE GF C++ ITV A QDVTISGAYTIT+GA FAGST+ D GSLF NEG LKLDGITF TE T+G+RAVWN G LSV GCTFELYPTGAFL+RGGVIYSDSA IAIS+S FKSNL EXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAG TTFSTSAAEYGG AIECCGAVIS+ FTGADTASDG R +D C +L
Sbjct: 1 MGFTSKTAGLALLFLGLAARQASAVTSCLDLITAVEAISDTGTIELEGGFNCDTFITVTAGQDVTISGAYTITIGAGFAGSTDED--GSLFVNEGILKLDGITFVTETTNGNRAVWNAGELSVEGCTFELYPTGAFLARGGVIYSDSAEAIAISNSIFKSNLASEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 270
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C2_9PHAE) HSP 1 Score: 203 bits (517), Expect = 3.900e-57 Identity = 114/144 (79.17%), Postives = 121/144 (84.03%), Query Frame = 1
Query: 319 MGFTRKSARLALFFLGLAARQASAVTTCPALITAVEAISGTGTVELESGFTCESHITVAASQDVTISGAYTITLGALFAGSTNTDAGGSLFENEGTLKLDGITFATEATDGSRAVWNTGTLSVVGCTFELYPTGAFLSRGGVIY 750
M TRKSA LAL FLGLAARQASAVT+C LITAV+AI TGT+ELE GFTC+ ITV A QDVTISGAYTIT+GA FAGST D GSLF NEG LKLDGITFATE TDG+RAVWN GTLSV GCTFELYPTGAFLSRGGVI+
Sbjct: 1 MVLTRKSAGLALLFLGLAARQASAVTSCLDLITAVDAIFDTGTIELEGGFTCDIFITVTAGQDVTISGAYTITIGAGFAGSTGAD--GSLFVNEGGLKLDGITFATETTDGNRAVWNVGTLSVEGCTFELYPTGAFLSRGGVIF 142
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.180e-23 Identity = 66/130 (50.77%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 745 IYSDSAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNEVGTGVDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNL 1134
IYSDSAG I IS+S FKSNL E NEVGTGVDADGAG TTFSTSAAEYGG AIECCGAVIS+ FTGADTASDG R +D C +L
Sbjct: 14 IYSDSAGIITISNSIFKSNLASERGGAVYAIGSETLTITDSLFRGNEVGTGVDADGAGGDVYAGTNVELTVTGTTFSTSAAEYGGAAIECCGAVISDTVFTGADTASDGVSRRMGFKRERIKRDCCPNHL 143
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.110e-13 Identity = 104/384 (27.08%), Postives = 153/384 (39.84%), Query Frame = 1
Query: 607 LKLDGITFATEA----TDGS-RAVWNTGTLSVVGCTFELYPTGAFLSR--GGVIYSD------SAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNE-VGTG-VDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNLDLSNSTFSG---C-----------TVGSTTGAGGSVAIFDTSATITECTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVTDGETT---------------------------------------VTMGEFNDMYCFANEPYECEFVYDQS----TVVHSGEFKCQIC 1542
L LD +TFA EA + G RAVWN G L V GC FE +F S+ GG IYS S+ +++ +STF N+ E NE VG G GAG ++F + YGG A+ CGA I TF D+ +G + + D++ + L L SG C + ++TG GG++A D+S ++ + SS+G + F +S DSG QL ++ +QFN N A + G+A+++ TG TT +G D+YCF N+PY+CE + S V +G +C +C
Sbjct: 122 LALDRLTFANEAGVLGSPGEVRAVWNAGQLQVDGCVFESL---SFSSQQDGGGIYSTAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLSRYGGAALFACGANIYESTF---DSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCPPLFVSGTMFESNSASTGYGGAIASVDSSLSVFNSSVLSSLGGGIYFGTSDDSGRDQLELELLQFNWNGGSASS---PDLVGSALLLERTGTPASNTTGPLEQLDPSTSSAXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVATDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNVC 496
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 2.290e-12 Identity = 102/386 (26.42%), Postives = 152/386 (39.38%), Query Frame = 1
Query: 607 LKLDGITFATEA----TDGS-RAVWNTGTLSVVGCTFELYPTGAFLSR--GGVIYS------DSAGTIAISDSTFKSNLVEEXXXXXXXXXXXXXXXXXXXXXXNE-VGTG-VDADGAGXXXXXXXXXXXXXXXTTFSTSAAEYGGGAIECCGAVISNCTFTGADTASDGAHYGGALLVNRPDQDACSRNLDLSNSTFSG---C-----------TVGSTTGAGGSVAIFDTSATITECTFESSVGTAVLFSSSSDSGEHQLLMDYVQFNLNTFPAEAYATDTEQGAAIVVTNTGVTDGETT-----------------------------------------VTMGEFNDMYCFANEPYECEFVYDQS----TVVHSGEFKCQIC 1542
L LD +TFA EA + G RAVWN G L V GC FE +F S+ GG IYS S+ +++ +STF N+ E NE VG G GAG ++F YGG A+ CGA I TF D+ +G + + D++ + L L SG C + ++TG GG++A D+S ++ + S++G + F +S DSG QL ++ +QFN N + ++ G+A+++ TG TT +G D+YCF N+PY+CE + S V +G +C C
Sbjct: 143 LALDRLTFANEAGVLGSPGEVRAVWNAGQLDVDGCVFESL---SFSSQQDGGGIYSMAEPGSGSSAFVSVRNSTFIGNVAENHGGAISSWGQGELEVSNCSFVGNEAVGAGSYRRAGAGGAVYASPGVFVTVLNSSFEGCLGRYGGAALFACGANIYESTF---DSNEATGLFGAIVNGDLSDEERANATLSLGGGGQSGNYTCPPLFVSGTMFESNSASTGYGGAIASVDSSLSVFNSSVLSTLGGGIYFGTSDDSGRDQLELELLQFNWN---GGSSSSPDLVGSALLLERTGTPASNTTGPLEQVDPSTSSXXXXXXXXXXXXXXXXXXXXXXXXXTAGSTLVGVARDIYCFQNDPYDCEAYFGDSDGEIAVQLTGTVRCNAC 519 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig110.882.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig110.882.1 >prot_Ecto-sp9_F_contig110.882.1 ID=prot_Ecto-sp9_F_contig110.882.1|Name=mRNA_Ecto-sp9_F_contig110.882.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=484bp MGFTRKSARLALFFLGLAARQASAVTTCPALITAVEAISGTGTVELESGFback to top mRNA from alignment at Ecto-sp9_F_contig110:42378..50234+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig110.882.1 ID=mRNA_Ecto-sp9_F_contig110.882.1|Name=mRNA_Ecto-sp9_F_contig110.882.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=7857bp|location=Sequence derived from alignment at Ecto-sp9_F_contig110:42378..50234+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig110:42378..50234+ >mRNA_Ecto-sp9_F_contig110.882.1 ID=mRNA_Ecto-sp9_F_contig110.882.1|Name=mRNA_Ecto-sp9_F_contig110.882.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2904bp|location=Sequence derived from alignment at Ecto-sp9_F_contig110:42378..50234+ (Ectocarpus species9 EcSCA_722f female)back to top |