mRNA_Ecto-sp9_F_contig110.877.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig110.877.1
Unique NamemRNA_Ecto-sp9_F_contig110.877.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA9_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 2.820e-157
Identity = 229/235 (97.45%), Postives = 231/235 (98.30%), Query Frame = 1 
Query:  112 MSAAGHGTDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAARRQEAKPSNQPPATTSDSCTETSVEKGATRGNIGTCDPRPDP 816
            MSAAGHGTDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQ VQSWDKELREQRAARRQEAKPSNQPPATTSDSCT+TSVEKGA RG+ GTCDP PDP
Sbjct:    1 MSAAGHGTDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQ-VQSWDKELREQRAARRQEAKPSNQPPATTSDSCTKTSVEKGAARGDTGTCDPSPDP 234
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU85_HETAK)

HSP 1 Score: 222 bits (566), Expect = 1.110e-68
Identity = 129/234 (55.13%), Postives = 161/234 (68.80%), Query Frame = 1 
Query:    1 MHLRVCLVATGLVPAHGFLSYRPFHNRRTPFNTARPIMSAAGHGTDMNVLPAS-ALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAARRQ 699
            MHLR+  +   L+ A G L+ R  H        A    + +G G+   +  A+ ++ F R+VG+LK+LKRTGWV RGV  PESVSDHMYRM+MCSFL++DP +DR    K+A+VHDLAEALAGDI P   VS+ +KRR EE  LD I  T+ S  I  EI++LW EYE  ++ EA  VKDLDK EMI+QAD+YE+GQ  DL EFF+STEG F T QQVQ WD+ELR QRAAR Q
Sbjct:    1 MHLRLHFLVHALLIA-GSLNLRIAHKSLAKMLAA----NQSGDGSRSALTDAAKSIEFFRIVGQLKKLKRTGWVKRGVDLPESVSDHMYRMSMCSFLLSDPAVDRMWCTKMALVHDLAEALAGDITPHCGVSEAEKRRREEAALDNILETVPSPEIGNEIRELWLEYESGSTPEAIFVKDLDKFEMILQADEYERGQNKDLSEFFKSTEGYFKT-QQVQQWDQELRAQRAARLQ 228
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U169_9STRA)

HSP 1 Score: 212 bits (540), Expect = 3.780e-65
Identity = 117/189 (61.90%), Postives = 142/189 (75.13%), Query Frame = 1 
Query:  142 NVLPASA---LSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPF-QKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQ-GLDLGEFFESTEGCFTTPQQVQSWDKELREQRAAR 693
            NV P SA   L F+RVVGKLK LKRTGWV+  VA PESV+DHMYRMAMCSFLITDP LDR+R+MKLA+VHDLAEAL GDI P  ++ +KE KR LEE+ +  I   +G + I+ EI  LW EYED ++ EARVVKD DK EMI+QAD+YE+ Q G +L +FF+ST   F  PQ V+ WD ELR+QR A+
Sbjct:   50 NVSPPSASQALDFLRVVGKLKTLKRTGWVNNKVALPESVADHMYRMAMCSFLITDPALDRTRLMKLAVVHDLAEALVGDIVPHDERYTKELKRTLEEDAIRSIAGDLGHEGISAEIMSLWLEYEDQSTPEARVVKDFDKFEMILQADEYERSQPGQNLEDFFQSTANAFQHPQ-VREWDAELRKQRDAK 237
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPL2_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.660e-65
Identity = 111/195 (56.92%), Postives = 142/195 (72.82%), Query Frame = 1 
Query:  112 MSAAGHGTDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAARR 696
            M+ +  G+   V P+  L F+RVVG LK  KRTGWVHRGV  PESV+DH YRMAMC+FL      DR+R+MKLA+VHDLAE+L GDIAP QKVS EDK R+E E +++I ++IG + IA EI  L+ +YE+  + EA++VK++DK EMIVQAD+YE+ QG +L EFF+ST   F TP    SW+ ELR QR ARR
Sbjct:    1 MATSTGGSTGPVEPSKVLDFLRVVGGLKRTKRTGWVHRGVDDPESVADHSYRMAMCAFLADGDAYDRNRVMKLAVVHDLAESLVGDIAPHQKVSNEDKARMELEAMERITSSIGHEAIAAEILDLFTDYEEQRTPEAQLVKEIDKFEMIVQADEYEREQGKELQEFFDSTAASFQTPMMA-SWNAELRRQRDARR 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQK2_PYTOL)

HSP 1 Score: 208 bits (530), Expect = 4.720e-64
Identity = 105/181 (58.01%), Postives = 140/181 (77.35%), Query Frame = 1 
Query:  157 SALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITD--PTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAAR 693
            +A+ F+R+ G+LK+LKRTGWV+  V  PESV+DHMYRM MC  LI +  P+++RS+ +K+A+VHDLAE+L GDI P   V+ EDK R+E+E L++ICAT+G  P A EIK+LW+EYE  TSEEAR+VKD DK EMI+QAD+YE+ Q + L +FF+ST+G F TP  V+SW  EL +QR AR
Sbjct:   11 NAIEFLRICGRLKQLKRTGWVNHKVHLPESVADHMYRMGMCCLLIDEVNPSVNRSKCIKMAIVHDLAESLVGDITPHDGVADEDKHRMEKEALEQICATLGDSPAATEIKELWHEYEAGTSEEARMVKDFDKFEMILQADEYERAQNIPLDDFFQSTQGKFRTPL-VRSWVDELIQQREAR 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=26 Tax=Phytophthora TaxID=4783 RepID=H3GV42_PHYRM)

HSP 1 Score: 205 bits (522), Expect = 5.910e-63
Identity = 105/181 (58.01%), Postives = 136/181 (75.14%), Query Frame = 1 
Query:  157 SALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDP--TLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAAR 693
            SA+ F+R+ G+LK LKRTGWV+  VA PESV+DHMYRM MC  L+ D   T++RS+ +K+A+VHDLAE+L GDI P   V++EDK R+E+E LD+IC T+G  P A EI+ LW EYE  ++EEA++VKD DK EMI+QADDYE+ Q + L +FF+ST+G F TP  VQSW  EL  QR AR
Sbjct:   11 SAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMGMCCMLLDDANETVNRSKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICGTLGDTPSAAEIRSLWNEYEAGSTEEAKMVKDFDKFEMILQADDYERAQNIPLDDFFQSTKGKFRTPL-VQSWVAELTSQRTAR 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIE9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 4.060e-62
Identity = 105/189 (55.56%), Postives = 137/189 (72.49%), Query Frame = 1 
Query:  133 TDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLIT-DPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAARR 696
            T   +   SA+ F+R+ G+LK LKRTGWV+  V  PESV+DHMYRMAMC+ L+  D +LDR+R +K+A+VHDLAE+  GDI P   VS E+K RLE+  +D ICA +G    A+EIK+LW EYED +++EA++VKD DK EMI+QAD+YE  Q ++L +FF STEG F TP  VQSW  EL  QR AR+
Sbjct:    2 TTRGITATSAVEFLRICGQLKRLKRTGWVNHKVNAPESVADHMYRMAMCTMLLDGDSSLDRTRCIKMAIVHDLAESYVGDITPHDGVSNEEKHRLEKNAIDDICAKLGPSQAAVEIKELWQEYEDASTDEAKMVKDFDKFEMILQADEYESVQDVNLDQFFTSTEGKFKTPL-VQSWVAELNAQRHARK 189
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6A0_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.150e-61
Identity = 104/194 (53.61%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:  133 TDMNVLPASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLI-TDPTLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDP-IALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAARRQEAK 708
            T   +  +SAL F+RV G LK LKRTGWV+  V  PESV++HMYR+AMCS L+  D ++DR + MK+A+VHDLAEA  GDI P   VS EDK ++E++ +D+IC  +G++   A EI++LW+EYE+ ++EEA++VKD DK EMI+QAD+YE  QG+DL +FF ST+G F TP  VQSW  EL  QR  R+  +K
Sbjct:    2 TTRGISASSALEFLRVCGALKRLKRTGWVNHKVESPESVAEHMYRLAMCSLLLDNDSSVDRMKCMKMAIVHDLAEAFVGDITPHDGVSDEDKHKMEKDAIDEICTKLGAESEAAKEIRELWHEYENASTEEAKMVKDFDKFEMILQADEYENAQGVDLQDFFNSTKGKFKTPL-VQSWVSELNAQRDTRKSNSK 194
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZR71_PHYSP)

HSP 1 Score: 201 bits (511), Expect = 2.310e-61
Identity = 103/181 (56.91%), Postives = 136/181 (75.14%), Query Frame = 1 
Query:  157 SALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDP--TLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAAR 693
            SA+ F+R+ G+LK LKRTGWV+  VA PESV+DHMYRM+MC  L+ D   T++R + +K+A+VHDLAE+L GDI P   V++EDK R+E+E LD+IC T+G  P A EI+ LW EYE  ++EEA++VKD DK EMI+QADDYE+   + L +FF+ST+G F TP  VQSW +EL  QR AR
Sbjct:    9 SAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDANETVNRPKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICNTLGDTPSAAEIRSLWNEYEAGSTEEAKIVKDFDKFEMILQADDYERAHNVPLDDFFQSTKGKFRTPL-VQSWVEELTTQRDAR 188
[Close]
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Match: 5'-deoxynucleotidase (n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1B0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 3.970e-61
Identity = 102/181 (56.35%), Postives = 138/181 (76.24%), Query Frame = 1 
Query:  157 SALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDPT--LDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATIGSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDLGEFFESTEGCFTTPQQVQSWDKELREQRAAR 693
            +A+ F+R+ G+LK LKRTGWV+  VA PESV+DHMYRM+MC  L+ D    ++RS+ +K+A+VHDLAE+L GDI P   V++EDK R+E+E LD+IC+ +G  P A EI++LW EYE  ++EEA++VKD DK EMI+QADDYE+ Q + LG+FF+ST+  F TP  VQSW +EL  QR AR
Sbjct:   11 NAIEFLRLCGRLKTLKRTGWVNNKVALPESVADHMYRMSMCCMLLDDDNKAVNRSKCIKMAIVHDLAESLVGDITPHDGVAEEDKHRMEKEALDEICSKLGDTPSAAEIRELWAEYEAGSTEEAKMVKDFDKFEMILQADDYERAQNIPLGDFFQSTKDKFRTPL-VQSWVEELTTQRNAR 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig110.877.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
5'-deoxynucleotidase2.820e-15797.45n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVA9_ECTSI[more]
5'-deoxynucleotidase1.110e-6855.13n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7... [more]
5'-deoxynucleotidase3.780e-6561.90n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID... [more]
5'-deoxynucleotidase4.660e-6556.92n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1... [more]
Uncharacterized4.720e-6458.01protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
5'-deoxynucleotidase5.910e-6358.01n=26 Tax=Phytophthora TaxID=4783 RepID=H3GV42_PHYR... [more]
5'-deoxynucleotidase4.060e-6255.56n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A... [more]
5'-deoxynucleotidase1.150e-6153.61n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0... [more]
5'-deoxynucleotidase2.310e-6156.91n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZR71_PHYSP[more]
5'-deoxynucleotidase3.970e-6156.35n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig110contigEcto-sp9_F_contig110:19961..23723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score449.9
Seed ortholog evalue8.5e-124
Seed eggNOG ortholog2880.D7FVA9
Preferred nameHDDC2
KEGG rclassRC00002
KEGG koko:K07023,ko:K07198,ko:K13800,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map00240,map00983,map01100,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
KEGG ModuleM00052
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019199,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030431,GO:0032501,GO:0036211,GO:0038023,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.HD domain
EggNOG OGsCOG1896@1,KOG3197@2759
EC2.7.11.11,2.7.4.14
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHD domain
Ec32 orthologEc-14_000400.1
Exons7
Model size819
Cds size819
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928334.2111669-CDS-Ecto-sp9_F_contig110:19960..200901622928334.2111669-CDS-Ecto-sp9_F_contig110:19960..20090Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 19961..20090 +
1692277837.279577-CDS-Ecto-sp9_F_contig110:19960..200901692277837.279577-CDS-Ecto-sp9_F_contig110:19960..20090Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 19961..20090 +
1622928334.222108-CDS-Ecto-sp9_F_contig110:20664..207761622928334.222108-CDS-Ecto-sp9_F_contig110:20664..20776Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 20665..20776 +
1692277837.2918482-CDS-Ecto-sp9_F_contig110:20664..207761692277837.2918482-CDS-Ecto-sp9_F_contig110:20664..20776Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 20665..20776 +
1622928334.2320588-CDS-Ecto-sp9_F_contig110:21142..212111622928334.2320588-CDS-Ecto-sp9_F_contig110:21142..21211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 21143..21211 +
1692277837.3005142-CDS-Ecto-sp9_F_contig110:21142..212111692277837.3005142-CDS-Ecto-sp9_F_contig110:21142..21211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 21143..21211 +
1622928334.2462482-CDS-Ecto-sp9_F_contig110:21616..217711622928334.2462482-CDS-Ecto-sp9_F_contig110:21616..21771Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 21617..21771 +
1692277837.3100843-CDS-Ecto-sp9_F_contig110:21616..217711692277837.3100843-CDS-Ecto-sp9_F_contig110:21616..21771Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 21617..21771 +
1622928334.2590625-CDS-Ecto-sp9_F_contig110:22094..222111622928334.2590625-CDS-Ecto-sp9_F_contig110:22094..22211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 22095..22211 +
1692277837.3195796-CDS-Ecto-sp9_F_contig110:22094..222111692277837.3195796-CDS-Ecto-sp9_F_contig110:22094..22211Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 22095..22211 +
1622928334.2714627-CDS-Ecto-sp9_F_contig110:23042..231041622928334.2714627-CDS-Ecto-sp9_F_contig110:23042..23104Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 23043..23104 +
1692277837.3289099-CDS-Ecto-sp9_F_contig110:23042..231041692277837.3289099-CDS-Ecto-sp9_F_contig110:23042..23104Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 23043..23104 +
1622928334.2842808-CDS-Ecto-sp9_F_contig110:23549..237231622928334.2842808-CDS-Ecto-sp9_F_contig110:23549..23723Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 23550..23723 +
1692277837.3405137-CDS-Ecto-sp9_F_contig110:23549..237231692277837.3405137-CDS-Ecto-sp9_F_contig110:23549..23723Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig110 23550..23723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig110.877.1prot_Ecto-sp9_F_contig110.877.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig110 19961..23723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig110.877.1

>prot_Ecto-sp9_F_contig110.877.1 ID=prot_Ecto-sp9_F_contig110.877.1|Name=mRNA_Ecto-sp9_F_contig110.877.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=273bp
MHLRVCLVATGLVPAHGFLSYRPFHNRRTPFNTARPIMSAAGHGTDMNVL
PASALSFMRVVGKLKELKRTGWVHRGVAKPESVSDHMYRMAMCSFLITDP
TLDRSRIMKLAMVHDLAEALAGDIAPFQKVSKEDKRRLEEEGLDKICATI
GSDPIALEIKKLWYEYEDCTSEEARVVKDLDKLEMIVQADDYEKGQGLDL
GEFFESTEGCFTTPQQVQSWDKELREQRAARRQEAKPSNQPPATTSDSCT
ETSVEKGATRGNIGTCDPRPDP*
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mRNA from alignment at Ecto-sp9_F_contig110:19961..23723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig110.877.1 ID=mRNA_Ecto-sp9_F_contig110.877.1|Name=mRNA_Ecto-sp9_F_contig110.877.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3763bp|location=Sequence derived from alignment at Ecto-sp9_F_contig110:19961..23723+ (Ectocarpus species9 EcSCA_722f female)
ATGCACCTCCGCGTATGCTTGGTAGCAACAGGCTTAGTGCCAGCACACGG
GTTTCTCTCTTACAGGCCCTTTCATAATCGTCGAACCCCATTCAACACCG
CCAGACCCATCATGTCTGCAGCTGGACACGGTGAGAAAGCACACATGTTT
GCCGAAAAATTTGAATTTCACGCCTGCTGAATTCCTTTCGATGCAGTCCC
ACGGGATGATGCATGTATTGCAAGGAGGATGCCCACGCCGACATAAATAA
CGCCGGGAATCTAAGTGATGGGATGTTGCTAATCGATCTTTGATGGTAAG
TAGGCGTAAATGAGCACCTTTCGCGCTATTGAGATACGGCGGTGTCCATT
ATATTGTCTCGGAAGGTGGGGGTGGTATATTACATCACACGCCTTCGCTC
ATCTCGCTCCCCCCCCCTCGCTCCGTCCCCGGCATTGTATGCTAGCGAAG
CGAGGACTATGGTCTTCATTGTGTACCGTGACGCATTATGCTTCCAACAG
CGTGTGTGTGCAACAAAACAATTCGATCCAATAGCTGTCCTCTTTGTTTA
TTTTAACAAAATGGGGTGCGTTGCTTACGTCAAAAGGACGTCGTGTGCAA
GTACATAAAGCGTCCGTCGTATTGCTTACCAGCCCCGGCCGTTAACTAGT
TAATTGTGCGAGATCACAAGCACTTTGCTTCCTTTGTCTGTTTTTTGTTC
CAAGGCACGGACATGAATGTGCTTCCGGCCAGCGCGTTGTCGTTCATGAG
AGTGGTGGGCAAGCTGAAGGAGCTCAAGAGGACCGGCTGGGTTCATCGAG
GAGTCGCTAAACCAGAGTGAGCCTGCATAGACTGTTGTAATGCACTGCTG
CATCGATAGGCGGCGTTAAATCCATACGGCTCGCAAAGCTATGCGTCGTG
CCTACGGGCACGAACGGCGTAAAATGCGAAAAGTGCAGGTACATTACACA
GATATGCACAAATATAGGGAGCGGTGTAGCGCATGTAAGGCGCAGGTATG
CAAGGCGCAGAGTGTGTACATCCAGTATACTAGCCTACACATCCACGACT
ATGTAGCATGAGCACAGTTGAGGAACATGTGCACGTTGGTGAATCGCTAC
TGGAGAAGATGTAGCGACCATGTCATCCACTGCTTTCAGCTGATCTCTTC
CGCCGCCCAAAACACATTCGACTGCAAATCAGGTCGGTGTCCGATCACAT
GTATCGCATGGCAATGTGCTCCTTCCTCATCACGGACCCGACATTGGATC
GGTAAGTCCTGGTTCAAGACTGGTCCCTTGGTACCCAACACGGCAGTTTT
GTATTCTGCACAGCAGTCGGTACTTCGTCTCTTGTAGGAATCAGGTGTTG
TTCTTGCAGACCATGGTAGTACTCTCGTCAGCGAGGTATCTACAGCGGCG
CCGTCCTCTGCATAGATTGGTTGGCCTAGGGGCGAGCGCGACACGTTTGC
CACGTTGATACGCGTATGCACAAGAAGGCTCGAGAGATCGCCAGAACCGG
TTCTACTTGGCGTTGCCAGCCATCTTTTAACAGGGAGTGCCCGTATGAAC
GCGTGCGTCCGGCCCTGCGTCATTGTTCTCGAGATCAGCAGATGGTCGTT
TGTCTCACCATCGTCCTTCTCCGTCTTGTTTTTCGTGTGGTAACTTTAAC
GAATAGATCGCGCATTATGAAACTGGCGATGGTACACGATCTCGCCGAAG
CCCTGGCGGGAGACATCGCGCCCTTCCAGAAGGTCTCCAAGGAGGACAAG
CGTCGCCTGGAGGAGGAAGGGCTAGACAAGATATGCGCTACCATTGGCAG
CGATCCCATCGGTGCGCGGCTGGTTTAGGGCCTAGATGGCGTGTCGCGTG
ATCTAACTAGAATGTGTATGATGTTGTGCCGACTATCGAGAGCCAAGTGT
GGAACATGTGGCTAACGTCAGCGTGAGGTCTATTTGGGGGTATTGAGCTA
GGTTGGTGGAAACGGGCATGGTTTTTTTCGCATATTGAGAAGCTTGTCCT
TCAAGAGAGGAAGGACAACACCGACCCGTGTCATCACGTGCTGCAGCTGC
TGTCGAAGCCTAAGGCCACGTCGGGGGCGAACCTCCGCTGACTTTTGATG
TTTGGTGTCGTCTGTTGCTTCCTCGTGCCCACAGCTCTAGAGATCAAAAA
GCTGTGGTATGAGTACGAAGACTGCACGTCCGAGGAGGCGAGGGTGGTCA
AGGACTTGGACAAGCTAGAGATGATTGTCCAGGCAGACGACTACGAAAAA
GGTGAGTCGCCGTGTTGCAGTTCTCGCCGCTCGATAAGCAGCGACCAAAG
TTTGCCTCCTATCCTTTTTTTGTGTCACCTCGGCTCGACTCAGGCTCCTC
GGTCCTGGTTGAAGTCAGCAGTCTTAGAACCATGTATGTTGTTTTACCGT
GATCGCCTTCGGTGACGTTCGACGGTACCTTTGCGGTACCTCTATTTCAC
AGGTGTCGGGACTGCTCCACACTCTTACCGCGCCCCCTCTCCCCCCTACA
CGCTGTTTTTAGTATATACTGTAGCACGCCCGTGGTCTTGAATAAACCCC
CAAAGTCTTTGTGGGAAGCCACTGCAGTCGCGGTGACATGTAGAGAACCC
CTGAGACTACCAGTAGATACTGGCGTCTGTGGCTTTCGCGCCTTTAAACC
TTTTAGTTGCTGTCGGTACCGCCTAAGCATGCGGTTGCAAAGGTGTGGAA
GTTCCTGGCACTACCGTCGCGGTGTTTGCGAGGAGAGGAGGGTGCTTCCC
TCCGTAAGGACACATGTTTTGTTGTCGCGGAGGGTGTTGACACACAAAAT
GCAATTGCTTCAATATTAGGGTAAAGTATTGGGGGCAGGCCTTCCGTATT
TCACTCGAATATTTGCAAGCGCGGTGGTGCTTCTCGCAGTCTGGTTTTGC
GCACCCCTCGAACTATATACCGGTATGAGTGTACGAAAAGACGAATATTC
TGTCATACCATGCTTGATGAAAAATGGCATGGTCCTATTATTGCTCACAC
ACGCGCCGTCCCTATCTCGGCAGTCTTCCAACTACTAGACGGAACGTCAT
GCCTCCCTACTGTGTCGTTGCCGATGGTGCAGGTCAAGGACTCGACCTGG
GCGAGTTTTTCGAGAGCACCGAAGGGTGCTTCACCACCCCCCAGGTGAAC
ACACACGCGAATCCTCTCCTCTCCGCTTCTCTCCGACGAGCTCAGTCGCT
GCGCTGTTTGTCGGCATGATGCTTCAAACGAGCACATTTTCCAGCAGGGG
CGTCGTTGTACACGATACGCGTAATACTTGAGTCGTTCAACGACAAAGGC
GTCCTTGTTCCAGCAAGTGGTTGCATTTGGCAGAGGTGCTGCATGTGAGT
GTTTGTCATGAGGATGCTCGACTCGGTTCGATTAGACCGAAGCGTGGCGT
TCGATTCACCTGCTTGGCTTTTCCGAACCTCCTCAACCTTGTCGTCCCTC
AGTGCATGGTTCTACACGGAAGGCTAGCCATCTGCACACACAGCAGTTCG
AGCTCTGTTGTTCCGTGGTGTGAGAGCTGCCTGATCATCGACGTTATGGT
ACGTGTGCTTGGTGCTGGTATGCGATTCCTCTTGACAAGCAGGTGCAGTC
GTGGGACAAGGAGCTGAGGGAGCAACGGGCTGCCCGTCGACAAGAAGCAA
AACCATCCAATCAGCCCCCAGCAACGACGTCAGATTCGTGCACGGAAACC
TCGGTCGAGAAGGGGGCAACGAGAGGGAATATCGGCACTTGCGACCCTCG
CCCAGACCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig110:19961..23723+

>mRNA_Ecto-sp9_F_contig110.877.1 ID=mRNA_Ecto-sp9_F_contig110.877.1|Name=mRNA_Ecto-sp9_F_contig110.877.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1638bp|location=Sequence derived from alignment at Ecto-sp9_F_contig110:19961..23723+ (Ectocarpus species9 EcSCA_722f female)
ATGCACCTCCGCGTATGCTTGGTAGCAACAGGCTTAGTGCCAGCACACGG
GTTTCTCTCTTACAGGCCCTTTCATAATCGTCGAACCCCATTCAACACCG
CCAGACCCATCATGTCTGCAGCTGGACACGATGCACCTCCGCGTATGCTT
GGTAGCAACAGGCTTAGTGCCAGCACACGGGTTTCTCTCTTACAGGCCCT
TTCATAATCGTCGAACCCCATTCAACACCGCCAGACCCATCATGTCTGCA
GCTGGACACGGCACGGACATGAATGTGCTTCCGGCCAGCGCGTTGTCGTT
CATGAGAGTGGTGGGCAAGCTGAAGGAGCTCAAGAGGACCGGCTGGGTTC
ATCGAGGAGTCGCTAAACCAGAGCACGGACATGAATGTGCTTCCGGCCAG
CGCGTTGTCGTTCATGAGAGTGGTGGGCAAGCTGAAGGAGCTCAAGAGGA
CCGGCTGGGTTCATCGAGGAGTCGCTAAACCAGAGTCGGTGTCCGATCAC
ATGTATCGCATGGCAATGTGCTCCTTCCTCATCACGGACCCGACATTGGA
TCGGTCGGTGTCCGATCACATGTATCGCATGGCAATGTGCTCCTTCCTCA
TCACGGACCCGACATTGGATCGATCGCGCATTATGAAACTGGCGATGGTA
CACGATCTCGCCGAAGCCCTGGCGGGAGACATCGCGCCCTTCCAGAAGGT
CTCCAAGGAGGACAAGCGTCGCCTGGAGGAGGAAGGGCTAGACAAGATAT
GCGCTACCATTGGCAGCGATCCCATCGATCGCGCATTATGAAACTGGCGA
TGGTACACGATCTCGCCGAAGCCCTGGCGGGAGACATCGCGCCCTTCCAG
AAGGTCTCCAAGGAGGACAAGCGTCGCCTGGAGGAGGAAGGGCTAGACAA
GATATGCGCTACCATTGGCAGCGATCCCATCGCTCTAGAGATCAAAAAGC
TGTGGTATGAGTACGAAGACTGCACGTCCGAGGAGGCGAGGGTGGTCAAG
GACTTGGACAAGCTAGAGATGATTGTCCAGGCAGACGACTACGAAAAAGC
TCTAGAGATCAAAAAGCTGTGGTATGAGTACGAAGACTGCACGTCCGAGG
AGGCGAGGGTGGTCAAGGACTTGGACAAGCTAGAGATGATTGTCCAGGCA
GACGACTACGAAAAAGGTCAAGGACTCGACCTGGGCGAGTTTTTCGAGAG
CACCGAAGGGTGCTTCACCACCCCCCAGGTCAAGGACTCGACCTGGGCGA
GTTTTTCGAGAGCACCGAAGGGTGCTTCACCACCCCCCAGCAGGTGCAGT
CGTGGGACAAGGAGCTGAGGGAGCAACGGGCTGCCCGTCGACAAGAAGCA
AAACCATCCAATCAGCCCCCAGCAACGACGTCAGATTCGTGCACGGAAAC
CTCGGTCGAGAAGGGGGCAACGAGAGGGAATATCGGCACTTGCGACCCTC
GCCCAGACCCTTGACAGGTGCAGTCGTGGGACAAGGAGCTGAGGGAGCAA
CGGGCTGCCCGTCGACAAGAAGCAAAACCATCCAATCAGCCCCCAGCAAC
GACGTCAGATTCGTGCACGGAAACCTCGGTCGAGAAGGGGGCAACGAGAG
GGAATATCGGCACTTGCGACCCTCGCCCAGACCCTTGA
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