mRNA_Ecto-sp9_F_contig10994.861.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10994.861.1
Unique NamemRNA_Ecto-sp9_F_contig10994.861.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10994.861.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.570e-47
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 2 
Query:   14 SRAAATLLAGAALWLVVAPLLAAGLFETAFVVTAQAWAEKGPLGALPCCSQPLRSLALGIFLLHAWAYACRARVPRWIAATRRALGMAPRA 286
            SRAAATLLAGA LWLVVAPLLAAGLFETAFVVTAQAWAEKGPLGALPCCSQPLRSLALG+FLLHAWAYACRARVPRWIAATRRALG+APRA
Sbjct: 1448 SRAAATLLAGAVLWLVVAPLLAAGLFETAFVVTAQAWAEKGPLGALPCCSQPLRSLALGMFLLHAWAYACRARVPRWIAATRRALGIAPRA 1538
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10994.861.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
RING-CH-type2.570e-4796.70domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10994contigEcto-sp9_F_contig10994:2978..3313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928331.2205896-CDS-Ecto-sp9_F_contig10994:2977..33131622928331.2205896-CDS-Ecto-sp9_F_contig10994:2977..3313Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 2978..3313 +
1692277835.9420035-CDS-Ecto-sp9_F_contig10994:2977..33131692277835.9420035-CDS-Ecto-sp9_F_contig10994:2977..3313Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10994 2978..3313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10994.861.1prot_Ecto-sp9_F_contig10994.861.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10994 2978..3313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10994.861.1

>prot_Ecto-sp9_F_contig10994.861.1 ID=prot_Ecto-sp9_F_contig10994.861.1|Name=mRNA_Ecto-sp9_F_contig10994.861.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp
QDGPLPRRGDAARGRRPVARGGSPPRRGTVRDGVRGDRAGVGGEGAAGGP
PLLQPTPPLAGPGHISAARLGLRLPRQGAQVDRRYAEGSRHGPEGRRRRR
WWWRGWGGWWG*
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mRNA from alignment at Ecto-sp9_F_contig10994:2978..3313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10994.861.1 ID=mRNA_Ecto-sp9_F_contig10994.861.1|Name=mRNA_Ecto-sp9_F_contig10994.861.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10994:2978..3313+ (Ectocarpus species9 EcSCA_722f female)
CAAGATGGCCCGCTCCCGCGCCGCGGCGACGCTGCTCGCGGGCGCCGCCC
TGTGGCTCGTGGTGGCTCCCCTCCTCGCCGCGGGACTGTTCGAGACGGCG
TTCGTGGTGACCGCGCAGGCGTGGGCGGAGAAGGGGCCGCTGGGGGCCCT
CCCCTGCTGCAGCCAACCCCTCCGCTCGCTGGCCCTGGGCATATTTCTGC
TGCACGCCTGGGCCTACGCCTGCCGCGCCAGGGTGCCCAGGTGGATCGCC
GCTACGCGGAGGGCTCTCGGCATGGCCCCGAGGGCCGCCGCCGGCGGCGG
TGGTGGTGGCGGGGATGGGGCGGATGGTGGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10994:2978..3313+

>mRNA_Ecto-sp9_F_contig10994.861.1 ID=mRNA_Ecto-sp9_F_contig10994.861.1|Name=mRNA_Ecto-sp9_F_contig10994.861.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10994:2978..3313+ (Ectocarpus species9 EcSCA_722f female)
CAAGATGGCCCGCTCCCGCGCCGCGGCGACGCTGCTCGCGGGCGCCGCCC
TGTGGCTCGTGGTGGCTCCCCTCCTCGCCGCGGGACTGTTCGAGACGGCG
TTCGTGGTGACCGCGCAGGCGTGGGCGGAGAAGGGGCCGCTGGGGGCCCT
CCCCTGCTGCAGCCAACCCCTCCGCTCGCTGGCCCTGGGCATATTTCTGC
TGCACGCCTGGGCCTACGCCTGCCGCGCCAGGGTGCCCAGGTGGATCGCC
GCTACGCGGAGGGCTCTCGGCATGGCCCCGAGGGCCGCCGCCGGCGGCGG
TGGTGGTGGCGGGGATGGGGCGGATGGTGGGGGTGACAAGATGGCCCGCT
CCCGCGCCGCGGCGACGCTGCTCGCGGGCGCCGCCCTGTGGCTCGTGGTG
GCTCCCCTCCTCGCCGCGGGACTGTTCGAGACGGCGTTCGTGGTGACCGC
GCAGGCGTGGGCGGAGAAGGGGCCGCTGGGGGCCCTCCCCTGCTGCAGCC
AACCCCTCCGCTCGCTGGCCCTGGGCATATTTCTGCTGCACGCCTGGGCC
TACGCCTGCCGCGCCAGGGTGCCCAGGTGGATCGCCGCTACGCGGAGGGC
TCTCGGCATGGCCCCGAGGGCCGCCGCCGGCGGCGGTGGTGGTGGCGGGG
ATGGGGCGGATGGTGGGGGTGA
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