mRNA_Ecto-sp9_F_contig10987.856.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10987.856.1
Unique NamemRNA_Ecto-sp9_F_contig10987.856.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAG3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.150e-27
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHI 183
            TYALIGAAA LGGMARMTISLTVI+LEATGDMQYVLPLMLTLMAARW GNVFNEGLYD+HI
Sbjct:  421 TYALIGAAAALGGMARMTISLTVILLEATGDMQYVLPLMLTLMAARWTGNVFNEGLYDIHI 481
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAK4_FISSO)

HSP 1 Score: 110 bits (275), Expect = 1.350e-26
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 186
            TYALIGAAA LGGMARMTISLTVI+LEATGDMQYVLPLMLTLMAAR+ GNVFNEGLYD+HIH
Sbjct:  589 TYALIGAAAVLGGMARMTISLTVILLEATGDMQYVLPLMLTLMAARFTGNVFNEGLYDIHIH 650
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVT8_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 2.690e-24
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 186
            TY+LIGAAA LGGMARMTISL VI++E TGD+QY LPLMLTL+AARW GNVFNEGLYD+HIH
Sbjct:  615 TYSLIGAAAMLGGMARMTISLAVILIECTGDLQYGLPLMLTLLAARWTGNVFNEGLYDIHIH 676
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=2 Tax=Sar TaxID=2698737 RepID=A0A813D0R8_9DINO)

HSP 1 Score: 103 bits (258), Expect = 2.700e-24
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 186
            TY+LIGAAA LGGMARMTISL VI++E TGD+QY LPLMLTL+AARW GNVFNEGLYD+HIH
Sbjct: 1121 TYSLIGAAAMLGGMARMTISLAVILIECTGDLQYGLPLMLTLLAARWTGNVFNEGLYDIHIH 1182
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.790e-24
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 186
            TYAL+GAAA LGGMARMTISLTVI+LEATGDMQYV+PLM+TLMAARWVGNVF   LY +HIH
Sbjct:  351 TYALMGAAAVLGGMARMTISLTVILLEATGDMQYVVPLMITLMAARWVGNVFTPSLYHIHIH 412
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7Y3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.810e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:   22 AACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIH 186
            AA LGGMARMTISLTVIILEATGDMQYVLPLMLTLM ARWVGN+FNEGLYD+HIH
Sbjct:  580 AAVLGGMARMTISLTVIILEATGDMQYVLPLMLTLMTARWVGNIFNEGLYDIHIH 634
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9F8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.830e-24
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMH 180
            TYAL+GAAA LGGMARMTISLTVI+LEATGDMQYV+PLM+TLMAARWVGN+F E LYD+H
Sbjct:  674 TYALVGAAAVLGGMARMTISLTVILLEATGDMQYVVPLMITLMAARWVGNLFGESLYDIH 733
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QV50_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 9.270e-24
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKVRGGW 210
            TY+LIGAAA LGGMARMTISLTVI++EATGD+QY LP+M+TLM ARW+G  FNEGLYD+HIH N    GW
Sbjct:  483 TYSLIGAAAVLGGMARMTISLTVILIEATGDIQYGLPIMMTLMTARWMGGCFNEGLYDIHIHMN----GW 548
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFY8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.730e-23
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKV 198
            TYAL+GAAA LGGMARMTISL VI+LEATG++  +LPLML LMAARWVGNVFNEGLYD+HIH  K+
Sbjct:  525 TYALVGAAAGLGGMARMTISLCVILLEATGNISNLLPLMLALMAARWVGNVFNEGLYDVHIHLKKM 590
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BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Match: Chloride (channel protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYM1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.360e-23
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGNVFNEGLYDMHIHGNKV 198
            TY+L+GAAA LGG+ RMTISLT+I+LEATGD+QY LPLM+TLM+ARWVGN  ++GLYD+HIHG  +
Sbjct:  506 TYSLVGAAAMLGGVTRMTISLTIILLEATGDLQYALPLMMTLMSARWVGNWLSDGLYDVHIHGRGI 571
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10987.856.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Chloride5.150e-2793.44channel protein n=1 Tax=Tribonema minus TaxID=3033... [more]
Chloride1.350e-2691.94channel protein n=2 Tax=Fistulifera solaris TaxID=... [more]
Chloride2.690e-2482.26channel protein n=4 Tax=Cafeteria roenbergensis Ta... [more]
Chloride2.700e-2482.26channel protein n=2 Tax=Sar TaxID=2698737 RepID=A0... [more]
Chloride4.790e-2483.87channel protein n=1 Tax=Fibrocapsa japonica TaxID=... [more]
Chloride6.810e-2492.73channel protein n=1 Tax=Pinguiococcus pyrenoidosus... [more]
Chloride6.830e-2485.00channel protein n=2 Tax=Monodopsidaceae TaxID=4250... [more]
Chloride9.270e-2474.29channel protein n=1 Tax=Spongospora subterranea Ta... [more]
Chloride1.730e-2378.79channel protein n=1 Tax=Pelagomonas calceolata Tax... [more]
Chloride2.360e-2371.21channel protein n=1 Tax=Achlya hypogyna TaxID=1202... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10987contigEcto-sp9_F_contig10987:488..1169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog2850.Phatr52412
Preferred nameCLCN7
KEGG koko:K05015,ko:K05016
KEGG TC2.A.49.3.3,2.A.49.3.4
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006884,GO:0007039,GO:0007154,GO:0007165,GO:0007600,GO:0008150,GO:0008152,GO:0008308,GO:0008361,GO:0008509,GO:0009056,GO:0009057,GO:0009268,GO:0009605,GO:0009612,GO:0009628,GO:0009987,GO:0010008,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015291,GO:0015297,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0016043,GO:0019538,GO:0019725,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032535,GO:0034220,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0050975,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901564,GO:1901565,GO:1901575,GO:1902476,GO:1905146
EggNOG free text desc.chloride channel
EggNOG OGs2XAQC@2836,COG0038@1,KOG0474@2759
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04040
Hectar predicted targeting categorysignal peptide
Exons2
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928330.7407906-CDS-Ecto-sp9_F_contig10987:487..6341622928330.7407906-CDS-Ecto-sp9_F_contig10987:487..634Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10987 488..634 -
1692277835.6786954-CDS-Ecto-sp9_F_contig10987:487..6341692277835.6786954-CDS-Ecto-sp9_F_contig10987:487..634Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10987 488..634 -
1622928330.7584605-CDS-Ecto-sp9_F_contig10987:1103..11691622928330.7584605-CDS-Ecto-sp9_F_contig10987:1103..1169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10987 1104..1169 -
1692277835.6887648-CDS-Ecto-sp9_F_contig10987:1103..11691692277835.6887648-CDS-Ecto-sp9_F_contig10987:1103..1169Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10987 1104..1169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10987.856.1prot_Ecto-sp9_F_contig10987.856.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10987 488..1169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10987.856.1

>prot_Ecto-sp9_F_contig10987.856.1 ID=prot_Ecto-sp9_F_contig10987.856.1|Name=mRNA_Ecto-sp9_F_contig10987.856.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=71bp
TYALIGAAACLGGMARMTISLTVIILEATGDMQYVLPLMLTLMAARWVGN
VFNEGLYDMHIHGNKVRGGW*
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mRNA from alignment at Ecto-sp9_F_contig10987:488..1169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10987.856.1 ID=mRNA_Ecto-sp9_F_contig10987.856.1|Name=mRNA_Ecto-sp9_F_contig10987.856.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=682bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10987:488..1169- (Ectocarpus species9 EcSCA_722f female)
ACCTACGCTCTGATCGGGGCCGCGGCATGCCTGGGGGGCATGGCTCGCAT
GACCATCTCACTCACCGTGAGTGATGGTATTCTTCTTACCCCCCCCCCGA
GACTTTCTGGACCGCCTTTGCGAGAAATAAAGTTAATGAGGAAATAGAAC
GGGCAGGGGGTACGCAGAAACTATTCCCTAACCAACATGTTGACTTACTA
GAAAAAGCCTGCGAAGCGTACTGGACTTGTATGTTTTCTCCTCAAGGAGA
CGTGTCAGCGATGCTTACTTTTTTTTCTTCCTCTACATATGACCCCACGA
ATCCACCTCCATCTAAGGGTCAGTCTCCGTACAACCAACCTTTGTTTTTG
TTTATTGTTCTTCCTCAAGAGTGTGGAGGAGGGGGTACTGGGAGTCGGAG
CGGTTCTATGTCGAGCCAAAATAACAGCACCAACGACGGCGCCGACGACA
AGAGCAACAGCAGCGTACGACACCAGTACTGCCGTACCGATCTCGTCGAC
TTTACTACCTCTCTCTCTCAAAAACAAACAAACAGGTAATCATACTGGAA
GCGACGGGGGACATGCAGTACGTCCTGCCGCTCATGCTCACGCTCATGGC
CGCGCGTTGGGTTGGAAACGTTTTCAACGAGGGGCTGTACGACATGCACA
TTCACGGGAACAAGGTGCGTGGTGGGTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10987:488..1169-

>mRNA_Ecto-sp9_F_contig10987.856.1 ID=mRNA_Ecto-sp9_F_contig10987.856.1|Name=mRNA_Ecto-sp9_F_contig10987.856.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10987:488..1169- (Ectocarpus species9 EcSCA_722f female)
ACCTACGCTCTGATCGGGGCCGCGGCATGCCTGGGGGGCATGGCTCGCAT
GACCATCTCACTCACCACCTACGCTCTGATCGGGGCCGCGGCATGCCTGG
GGGGCATGGCTCGCATGACCATCTCACTCACCGTAATCATACTGGAAGCG
ACGGGGGACATGCAGTACGTCCTGCCGCTCATGCTCACGCTCATGGCCGC
GCGTTGGGTTGGAAACGTTTTCAACGAGGGGCTGTACGACATGCACATTC
ACGGGAACAAGGTGCGTGGTGGGTGGTAGGTAATCATACTGGAAGCGACG
GGGGACATGCAGTACGTCCTGCCGCTCATGCTCACGCTCATGGCCGCGCG
TTGGGTTGGAAACGTTTTCAACGAGGGGCTGTACGACATGCACATTCACG
GGAACAAGGTGCGTGGTGGGTGGTAG
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