mRNA_Ecto-sp9_F_contig10984.855.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10984.855.1
Unique NamemRNA_Ecto-sp9_F_contig10984.855.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10984.855.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.310e-27
Identity = 92/98 (93.88%), Postives = 92/98 (93.88%), Query Frame = 2 
Query:  101 MGRFAQESHTDLRDWYVQCLNFRALKRRLIDDPPDPYDDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AVGPRGDDLYAGLDDLEQQEALL 388
            MGRFAQESHTDLRDWYVQCLNFRALKRRLIDDPPDPYDDHP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AVGPR DDL AGLDDLEQQEALL
Sbjct:    1 MGRFAQESHTDLRDWYVQCLNFRALKRRLIDDPPDPYDDHPSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGPRSDDLSAGLDDLEQQEALL 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10984.855.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.310e-2793.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10984contigEcto-sp9_F_contig10984:3147..3958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog2880.D8LHJ2
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size390
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10984.855.1prot_Ecto-sp9_F_contig10984.855.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10984 3247..3958 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928330.4720423-UTR-Ecto-sp9_F_contig10984:3146..32461622928330.4720423-UTR-Ecto-sp9_F_contig10984:3146..3246Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10984 3147..3246 +
1692277835.6320894-UTR-Ecto-sp9_F_contig10984:3146..32461692277835.6320894-UTR-Ecto-sp9_F_contig10984:3146..3246Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10984 3147..3246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928330.4916093-CDS-Ecto-sp9_F_contig10984:3246..32641622928330.4916093-CDS-Ecto-sp9_F_contig10984:3246..3264Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10984 3247..3264 +
1692277835.6433814-CDS-Ecto-sp9_F_contig10984:3246..32641692277835.6433814-CDS-Ecto-sp9_F_contig10984:3246..3264Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10984 3247..3264 +
1622928330.505817-CDS-Ecto-sp9_F_contig10984:3688..39581622928330.505817-CDS-Ecto-sp9_F_contig10984:3688..3958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10984 3689..3958 +
1692277835.6512744-CDS-Ecto-sp9_F_contig10984:3688..39581692277835.6512744-CDS-Ecto-sp9_F_contig10984:3688..3958Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10984 3689..3958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10984.855.1

>prot_Ecto-sp9_F_contig10984.855.1 ID=prot_Ecto-sp9_F_contig10984.855.1|Name=mRNA_Ecto-sp9_F_contig10984.855.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
MGRFAQESHTDLRDWYVQCLNFRALKRRLIDDPPDPYDDHPSMMTTASPN
EASAAATDESGTTNNGASSSSSSAVGPRGDDLYAGLDDLEQQEALL
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mRNA from alignment at Ecto-sp9_F_contig10984:3147..3958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10984.855.1 ID=mRNA_Ecto-sp9_F_contig10984.855.1|Name=mRNA_Ecto-sp9_F_contig10984.855.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=812bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10984:3147..3958+ (Ectocarpus species9 EcSCA_722f female)
GTTGGTCCGTGACTGAGCGCGCCAACCTGTGGGAGGCTCCCTGTCCTCCA
GCGTATGTTACCACACTAAACAGGAGAGGCACGAGAAAGTACACGCGATC
ATGGGTCGGTTCGCCCAGGTGAGGTTCCTTTCTGTTGGAGCAGCGGGTTC
ACTAGCACGCCAATACAGGACAATGTTTGGGCTGTCGTGCATTTCCCCCG
ATTGTCGAATGTTCTGCTTGCTTGCTGTGGAGTGCATGTAACCCAGAGAG
ATGTGATAGCCTGTGTCGGCTGATCCACGTTTCCGTGATACTCCCCCGCG
GAGACCACATACACTGGCGTGTTCTACGCCCGTTCTCCACTTCTCTCTCT
CACACAGTGCCGTCTCTCGTACAGCCCGTGCCACGTCTTGCTGTGGAGGG
CGAAAACGCGGGGAAACTATTTTACAAGAATATTTGTGTTTGTCACACAT
TTTGGCGTGATCATCGACACACGATCGACCCTCCTTGCCTTGAGAACCGC
ACGCTCTTACACACACACCATGATGCGGCGTCTTCTTGGCAGGAGAGCCA
CACAGACCTCCGGGACTGGTACGTCCAGTGCCTCAACTTCCGGGCCCTCA
AGCGGCGCCTCATCGACGATCCTCCGGACCCGTACGACGACCACCCCTCC
ATGATGACCACCGCCTCGCCGAACGAGGCATCAGCGGCAGCGACCGACGA
GAGCGGTACCACCAACAACGGCGCTTCCTCCTCCTCGTCATCCGCTGTTG
GCCCGCGAGGCGACGATCTGTACGCCGGGCTCGATGACCTGGAGCAGCAG
GAGGCGCTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10984:3147..3958+

>mRNA_Ecto-sp9_F_contig10984.855.1 ID=mRNA_Ecto-sp9_F_contig10984.855.1|Name=mRNA_Ecto-sp9_F_contig10984.855.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10984:3147..3958+ (Ectocarpus species9 EcSCA_722f female)
ATGGGTCGGTTCGCCCAGATGGGTCGGTTCGCCCAGGAGAGCCACACAGA
CCTCCGGGACTGGTACGTCCAGTGCCTCAACTTCCGGGCCCTCAAGCGGC
GCCTCATCGACGATCCTCCGGACCCGTACGACGACCACCCCTCCATGATG
ACCACCGCCTCGCCGAACGAGGCATCAGCGGCAGCGACCGACGAGAGCGG
TACCACCAACAACGGCGCTTCCTCCTCCTCGTCATCCGCTGTTGGCCCGC
GAGGCGACGATCTGTACGCCGGGCTCGATGACCTGGAGCAGCAGGAGGCG
CTGCTGGAGAGCCACACAGACCTCCGGGACTGGTACGTCCAGTGCCTCAA
CTTCCGGGCCCTCAAGCGGCGCCTCATCGACGATCCTCCGGACCCGTACG
ACGACCACCCCTCCATGATGACCACCGCCTCGCCGAACGAGGCATCAGCG
GCAGCGACCGACGAGAGCGGTACCACCAACAACGGCGCTTCCTCCTCCTC
GTCATCCGCTGTTGGCCCGCGAGGCGACGATCTGTACGCCGGGCTCGATG
ACCTGGAGCAGCAGGAGGCGCTGCTG
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