mRNA_Ecto-sp9_F_contig1098.850.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1098.850.1
Unique NamemRNA_Ecto-sp9_F_contig1098.850.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1098.850.1 vs.
Match: PTIF2, (plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 4.370e-68
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:  130 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGR 474
            MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGR
Sbjct:    1 MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSSVLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRVRGFGSGSSAGYFPGR 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1098.850.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PTIF2,4.370e-68100.00plastid translation intiation factor 2 n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1098contigEcto-sp9_F_contig1098:6669..8170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.3
Seed ortholog evalue1.2e-58
Seed eggNOG ortholog2880.D7FJE9
KEGG koko:K02519
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorysignal peptide
Exons3
Model size476
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1098.850.1prot_Ecto-sp9_F_contig1098.850.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1098 6669..8041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.9699671-CDS-Ecto-sp9_F_contig1098:6668..67651622928329.9699671-CDS-Ecto-sp9_F_contig1098:6668..6765Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1098 6669..6765 -
1692277835.4125552-CDS-Ecto-sp9_F_contig1098:6668..67651692277835.4125552-CDS-Ecto-sp9_F_contig1098:6668..6765Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1098 6669..6765 -
1622928329.9806323-CDS-Ecto-sp9_F_contig1098:7232..72981622928329.9806323-CDS-Ecto-sp9_F_contig1098:7232..7298Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1098 7233..7298 -
1692277835.4258406-CDS-Ecto-sp9_F_contig1098:7232..72981692277835.4258406-CDS-Ecto-sp9_F_contig1098:7232..7298Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1098 7233..7298 -
1622928329.9950786-CDS-Ecto-sp9_F_contig1098:7859..80411622928329.9950786-CDS-Ecto-sp9_F_contig1098:7859..8041Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1098 7860..8041 -
1692277835.443094-CDS-Ecto-sp9_F_contig1098:7859..80411692277835.443094-CDS-Ecto-sp9_F_contig1098:7859..8041Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1098 7860..8041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928330.006519-UTR-Ecto-sp9_F_contig1098:8041..81701622928330.006519-UTR-Ecto-sp9_F_contig1098:8041..8170Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1098 8042..8170 -
1692277835.4609976-UTR-Ecto-sp9_F_contig1098:8041..81701692277835.4609976-UTR-Ecto-sp9_F_contig1098:8041..8170Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1098 8042..8170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1098.850.1

>prot_Ecto-sp9_F_contig1098.850.1 ID=prot_Ecto-sp9_F_contig1098.850.1|Name=mRNA_Ecto-sp9_F_contig1098.850.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MAAAWRGTVFTLLTAACASGFVQPGCPGALAGREWARGGAKSCARPVCSS
VLRMSDHTEDRPRTQVFESSGGGDGEEGSAASKSADAPYVLTKPMDLVRV
RGFGSGSSAGYFPGR
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mRNA from alignment at Ecto-sp9_F_contig1098:6669..8170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1098.850.1 ID=mRNA_Ecto-sp9_F_contig1098.850.1|Name=mRNA_Ecto-sp9_F_contig1098.850.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1502bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1098:6669..8170- (Ectocarpus species9 EcSCA_722f female)
GACAGCCAGCAGCAGGGAGACACACACACCAAACAGCGAGCTAGACGGTG
ACGAAGGGAGAGGAGCGCCGCTTTTCGTTGAACCGGGTCCGTAACCACAG
CGTCGCGGTCGTTTTGCACCGCTCTCGACATGGCTGCCGCGTGGCGTGGG
ACGGTCTTTACCCTCCTCACAGCGGCTTGCGCATCAGGCTTCGTCCAGCC
AGGATGCCCAGGAGCGCTCGCAGGTAGAGAGTGGGCCAGGGGCGGGGCCA
AGAGCTGCGCAAGACCAGTGTGCTCGAGCGTGCTTCGCATGTCGGATCAC
ACGGAGGACAGGTGCGTTGCGCGCACCGGCCGCTGGTGTGCACGAAAAAT
ATGAAAACTGTCGCTGTGCTGTCGAGGCGAGGAAAGTTGAACAAACGTAT
GCAAGCAACGCCCGTTCGGTGCGTGAGCGGTTGTCCAGCGACTTCCCAAC
ACATGCGAGAGTAGGCTGCTGAGTGCGCTGACTGCCGTTGGGTGCGTGTG
CAATCGATTACTGCTGCGATGGCGGAGCAAAGGGCCCTGACGAGAGGAAC
GTTCAGTCGGCTCTTTCAGGGTTGATGGCTGATGGTCAAGGAGCGACGCG
TTCATGTGCACCAAGCTTGTCGCGGTTTTTCTCATGTTGCACATTCTCAG
CACCAAACAGCAGCATTGAGTCAGTCAGGCGACCTGATCTCAATAGGCAG
CCAAGGTGACCCTCCCCCGTACCCCTGACCACTCCGCTCTTCTATTGTGT
GCATGCATGTGGCGTGTCTTGAGGATTATCATATACCCCGTTTACAGTGC
GTCTTACAAAGGTATCACGAGATCACTAGACTACGTTTTTGCCTCTCCCT
TGAACCTCCTCGTGCACAACAGGCCAAGAACGCAGGTGTTTGAGAGCAGC
GGCGGCGGGGATGGCGAAGAGGGTTCCGCAGCATCGAAGTGAGCAGCAGC
AGCGGCAGCAGGCATTTAGAAAGAGAGGAGCTCTTGGTGTTTGTCGTTAT
CATGAGTGCACTTATTGCTTATCGCCAGCGCGCGGTGTTGGGCAACCTCT
ACCCAATGAAAGTCCCCCCCCTTGGTCCGCTGGCGTCCCTCCGGTAGCCG
GTACACCTGATGTCGCTGTCGCTGTCGGTGTGGTGCGCTTGGGCTCGCGT
GCACGCGTTCGATCGAGAGCGCGTGTACAACGCTGTCGTGTGTAGCAAAA
AGAACCACCAGTGCGCGTCCTATTTTGTTGAACACGTACGGATGTCGAGC
CAACACCAGCAGTACTTCCGCGGTGTACAGATTTATCGCGTTCAGTGGTT
GCCACATGTCGCTCGACTGCCTCAGCACGAGAGCCCATGTAGGTATGACG
ACGAAGGCGGGCAATGAAGTGACACAATAATACCCTTAAACCCCCCCATG
CCCAGGTCGGCTGACGCCCCATATGTACTGACGAAACCGATGGACCTGGT
ACGAGTCCGGGGTTTCGGCAGCGGTTCGTCGGCGGGTTACTTCCCCGGGA
GG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1098:6669..8170-

>mRNA_Ecto-sp9_F_contig1098.850.1 ID=mRNA_Ecto-sp9_F_contig1098.850.1|Name=mRNA_Ecto-sp9_F_contig1098.850.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1098:6669..8170- (Ectocarpus species9 EcSCA_722f female)
ATGGCTGCCGCGTGGCGTGGGACGGTCTTTACCCTCCTCACAGCGGCTTG
CGCATCAGGCTTCGTCCAGCCAGGATGCCCAGGAGCGCTCGCAGGTAGAG
AGTGGGCCAGGGGCGGGGCCAAGAGCTGCGCAAGACCAGTGTGCTCGAGC
GTGCTTCGCATGTCGGATCACACGGAGGACAGATGGCTGCCGCGTGGCGT
GGGACGGTCTTTACCCTCCTCACAGCGGCTTGCGCATCAGGCTTCGTCCA
GCCAGGATGCCCAGGAGCGCTCGCAGGTAGAGAGTGGGCCAGGGGCGGGG
CCAAGAGCTGCGCAAGACCAGTGTGCTCGAGCGTGCTTCGCATGTCGGAT
CACACGGAGGACAGGCCAAGAACGCAGGTGTTTGAGAGCAGCGGCGGCGG
GGATGGCGAAGAGGGTTCCGCAGCATCGAAGCCAAGAACGCAGGTGTTTG
AGAGCAGCGGCGGCGGGGATGGCGAAGAGGGTTCCGCAGCATCGAAGTCG
GCTGACGCCCCATATGTACTGACGAAACCGATGGACCTGGTACGAGTCCG
GGGTTTCGGCAGCGGTTCGTCGGCGGGTTACTTCCCCGGGAGGGTCGGCT
GACGCCCCATATGTACTGACGAAACCGATGGACCTGGTACGAGTCCGGGG
TTTCGGCAGCGGTTCGTCGGCGGGTTACTTCCCCGGGAGG
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