mRNA_Ecto-sp9_F_contig10938.822.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10938.822.1
Unique NamemRNA_Ecto-sp9_F_contig10938.822.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10938.822.1 vs.
Match: Avl9 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.640e-42
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:    1 KSVSYWGGASSKPTDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQGQPTLPLSTADIHVLRSDMPFKALPENGL 237
            KSVSY GGASSKP DARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQGQPTLPLSTADIHVLRSDMPFKALPENGL
Sbjct:   92 KSVSYRGGASSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQGQPTLPLSTADIHVLRSDMPFKALPENGL 170
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BLAST of mRNA_Ecto-sp9_F_contig10938.822.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK75_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.470e-41
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    4 SVSYWGGASSKPTDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQGQPTLPLSTADIHVLRSDMPFKALPENGL 237
            SVSY  G+SSKP DARQGEMPIALVAIVTFDLRQGPCLVCVDPPIED+QGQPTLPL+ ADIHVLRSDMPFKALPENGL
Sbjct:  109 SVSYRAGSSSKPMDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDDQGQPTLPLTAADIHVLRSDMPFKALPENGL 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10938.822.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Avl91.640e-4297.47domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized2.470e-4191.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10938contigEcto-sp9_F_contig10938:1219..2168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue1.9e-36
Seed eggNOG ortholog2880.D7FT00
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928325.911819-CDS-Ecto-sp9_F_contig10938:1219..13551622928325.911819-CDS-Ecto-sp9_F_contig10938:1219..1355Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10938 1220..1355 -
1692277833.5699701-CDS-Ecto-sp9_F_contig10938:1219..13551692277833.5699701-CDS-Ecto-sp9_F_contig10938:1219..1355Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10938 1220..1355 -
1622928325.929103-CDS-Ecto-sp9_F_contig10938:2067..21681622928325.929103-CDS-Ecto-sp9_F_contig10938:2067..2168Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10938 2068..2168 -
1692277833.5812492-CDS-Ecto-sp9_F_contig10938:2067..21681692277833.5812492-CDS-Ecto-sp9_F_contig10938:2067..2168Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10938 2068..2168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10938.822.1prot_Ecto-sp9_F_contig10938.822.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10938 1220..2168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10938.822.1

>prot_Ecto-sp9_F_contig10938.822.1 ID=prot_Ecto-sp9_F_contig10938.822.1|Name=mRNA_Ecto-sp9_F_contig10938.822.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=79bp
KSVSYWGGASSKPTDARQGEMPIALVAIVTFDLRQGPCLVCVDPPIEDEQ
GQPTLPLSTADIHVLRSDMPFKALPENGL
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mRNA from alignment at Ecto-sp9_F_contig10938:1219..2168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10938.822.1 ID=mRNA_Ecto-sp9_F_contig10938.822.1|Name=mRNA_Ecto-sp9_F_contig10938.822.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=950bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10938:1219..2168- (Ectocarpus species9 EcSCA_722f female)
AAATCGGTCTCCTACTGGGGGGGAGCCTCGTCAAAACCGACGGACGCGAG
GCAGGGGGAGATGCCGATTGCGTTGGTGGCCATCGTGACCTTCGATTTGA
GGTGGGGGGCGAGGGAGGCGGTGGGAAATTTCCTTCTTGGAGGAGGCGGG
TAGAGAACGATAGGCGATCGTCGTTGTAGTGTCGCTCGTTGGTGGCTATC
TCGCCGTAGCTCTTGTGCGTGAGGAGGGGGAGGGAGAGTGATGTGTGTTT
TTAGCGGTGTTTGTTTCATAGTGAGCGAGGTGTTGGATTCGGTAACCTAT
TGTTTTCTTTGGTCCCTAGCCCCTCTTCTTACCTTTGCCGCATCACGAGA
GCAAGCGCTTCGCCTCAAGCCTTTGCCGTACGGCGTTGTGCTATGCTATG
CGATGATGTATGCGAGCGCCTCCTGTGTTGTGATATAGCGCGGTTGATCA
CTTGTTGATGTCAGCTAGCGTCATACCCACCGCATACATGTGTGTTGCCG
TGGCTCTTTTTTCTGCCTGCCCTTGGATGTCTCCCGTTCATCCGTCGATA
TCACGTGTGTCGTATTCTACGAAACCCACATCCACCACTACCACCAGCAT
TCCACCAACACCAACACCACTACCACCGCCAACACCACCACCACCATCAG
CACAAACACCACACCAACACCAACCCCACCAACTTTAATAATAACACCAT
CACCAAAACCAGAAAGCGACCGCAACAGCATCGAAAAGAACACCAACAAC
CAAAACAACCACAACGACAACGATACTTCCGCCTTGCGTTGCAACTCCTT
TCTCCTGCTGCAGGCAAGGCCCGTGCCTGGTGTGTGTGGATCCGCCCATA
GAGGACGAGCAGGGACAGCCGACGCTCCCGCTTTCGACCGCTGACATCCA
CGTCCTTAGATCAGACATGCCCTTCAAGGCCCTCCCGGAAAATGGCCTGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10938:1219..2168-

>mRNA_Ecto-sp9_F_contig10938.822.1 ID=mRNA_Ecto-sp9_F_contig10938.822.1|Name=mRNA_Ecto-sp9_F_contig10938.822.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10938:1219..2168- (Ectocarpus species9 EcSCA_722f female)
AAATCGGTCTCCTACTGGGGGGGAGCCTCGTCAAAACCGACGGACGCGAG
GCAGGGGGAGATGCCGATTGCGTTGGTGGCCATCGTGACCTTCGATTTGA
GAAATCGGTCTCCTACTGGGGGGGAGCCTCGTCAAAACCGACGGACGCGA
GGCAGGGGGAGATGCCGATTGCGTTGGTGGCCATCGTGACCTTCGATTTG
AGGCAAGGCCCGTGCCTGGTGTGTGTGGATCCGCCCATAGAGGACGAGCA
GGGACAGCCGACGCTCCCGCTTTCGACCGCTGACATCCACGTCCTTAGAT
CAGACATGCCCTTCAAGGCCCTCCCGGAAAATGGCCTGGCAAGGCCCGTG
CCTGGTGTGTGTGGATCCGCCCATAGAGGACGAGCAGGGACAGCCGACGC
TCCCGCTTTCGACCGCTGACATCCACGTCCTTAGATCAGACATGCCCTTC
AAGGCCCTCCCGGAAAATGGCCTG
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