mRNA_Ecto-sp9_F_contig10911.796.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10911.796.1
Unique NamemRNA_Ecto-sp9_F_contig10911.796.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10911.796.1 vs.
Match: Helicase_C_4 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R9_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.690e-60
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 1 
Query:    4 TGLAKGEVEAVKVTIDKSMTFQQILPKYHFAKEETRRRIELAKRMQAERVAAGNKVIQRQIFSKTGFWTRRSGTEVYMLVDYPGRVSSGYSTHGVKLPMAVWSPCRGRFEISYKMFMNNGF 366
            TGLAKGEVEAVKVTIDKSMTFQQILPKYHFAKEET RRIELAK+MQAERVAAGNKV QRQIFSKTGFWT+RSGTEVY++VDYPGRV+SGYST+GVK P+ VWSPCRGR EISYK F+N+ F
Sbjct:  116 TGLAKGEVEAVKVTIDKSMTFQQILPKYHFAKEETDRRIELAKKMQAERVAAGNKVNQRQIFSKTGFWTKRSGTEVYLVVDYPGRVTSGYSTYGVKRPVTVWSPCRGRVEISYKAFLNHHF 236
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10911.796.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Helicase_C_41.690e-6086.78domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10911contigEcto-sp9_F_contig10911:1126..4145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue3.2e-43
Seed eggNOG ortholog2880.D7G3R9
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionStrawberry notch, helicase C domain
Ec32 orthologEc-00_006890.1
Exons6
Model size575
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10911.796.1prot_Ecto-sp9_F_contig10911.796.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10911 1183..4092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928320.9182384-UTR-Ecto-sp9_F_contig10911:1125..11821622928320.9182384-UTR-Ecto-sp9_F_contig10911:1125..1182Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10911 1126..1182 +
1692277832.1296797-UTR-Ecto-sp9_F_contig10911:1125..11821692277832.1296797-UTR-Ecto-sp9_F_contig10911:1125..1182Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10911 1126..1182 +
1622928321.19153-UTR-Ecto-sp9_F_contig10911:4092..41451622928321.19153-UTR-Ecto-sp9_F_contig10911:4092..4145Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10911 4093..4145 +
1692277832.2161026-UTR-Ecto-sp9_F_contig10911:4092..41451692277832.2161026-UTR-Ecto-sp9_F_contig10911:4092..4145Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10911 4093..4145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928320.9341729-CDS-Ecto-sp9_F_contig10911:1182..11941622928320.9341729-CDS-Ecto-sp9_F_contig10911:1182..1194Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 1183..1194 +
1692277832.1522214-CDS-Ecto-sp9_F_contig10911:1182..11941692277832.1522214-CDS-Ecto-sp9_F_contig10911:1182..1194Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 1183..1194 +
1622928320.9480197-CDS-Ecto-sp9_F_contig10911:1538..16681622928320.9480197-CDS-Ecto-sp9_F_contig10911:1538..1668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 1539..1668 +
1692277832.165166-CDS-Ecto-sp9_F_contig10911:1538..16681692277832.165166-CDS-Ecto-sp9_F_contig10911:1538..1668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 1539..1668 +
1622928321.0194392-CDS-Ecto-sp9_F_contig10911:2397..24501622928321.0194392-CDS-Ecto-sp9_F_contig10911:2397..2450Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 2398..2450 +
1692277832.1770175-CDS-Ecto-sp9_F_contig10911:2397..24501692277832.1770175-CDS-Ecto-sp9_F_contig10911:2397..2450Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 2398..2450 +
1622928321.0336132-CDS-Ecto-sp9_F_contig10911:2720..28881622928321.0336132-CDS-Ecto-sp9_F_contig10911:2720..2888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 2721..2888 +
1692277832.1844542-CDS-Ecto-sp9_F_contig10911:2720..28881692277832.1844542-CDS-Ecto-sp9_F_contig10911:2720..2888Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 2721..2888 +
1622928321.0471754-CDS-Ecto-sp9_F_contig10911:3486..35391622928321.0471754-CDS-Ecto-sp9_F_contig10911:3486..3539Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 3487..3539 +
1692277832.1918812-CDS-Ecto-sp9_F_contig10911:3486..35391692277832.1918812-CDS-Ecto-sp9_F_contig10911:3486..3539Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 3487..3539 +
1622928321.1726403-CDS-Ecto-sp9_F_contig10911:4043..40921622928321.1726403-CDS-Ecto-sp9_F_contig10911:4043..4092Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 4044..4092 +
1692277832.2058084-CDS-Ecto-sp9_F_contig10911:4043..40921692277832.2058084-CDS-Ecto-sp9_F_contig10911:4043..4092Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10911 4044..4092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10911.796.1

>prot_Ecto-sp9_F_contig10911.796.1 ID=prot_Ecto-sp9_F_contig10911.796.1|Name=mRNA_Ecto-sp9_F_contig10911.796.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
MTFQQILPKYHFAKEETRRRIELAKRMQAERVAAGNKVIQRQIFSKTGFW
TRRSGTEVYMLVDYPGRVSSGYSTHGVKLPMAVWSPCRGRFEISYKMFMN
NGFVRSTEAEASHLWDMEMIRAVHLRPASQSLLLASSRLTSRTRTFSCSA
GLGC*
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mRNA from alignment at Ecto-sp9_F_contig10911:1126..4145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10911.796.1 ID=mRNA_Ecto-sp9_F_contig10911.796.1|Name=mRNA_Ecto-sp9_F_contig10911.796.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3020bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10911:1126..4145+ (Ectocarpus species9 EcSCA_722f female)
AAGACGGGTCTGGCGAAGGGAGAGGTGGAGGCCGTTAAGGTCACGATCGA
TAAGTCCATGACCTTCCAGGTGAGCGAAGGGAGAAGGGGACACACACGTG
TTGGATAAGCCCATCCGCACGTCAGGGGTGCTACTGCATGATGCAAAGGA
AGGGGTGCTAGTATCTTTTGCGTATCGTGAGGCACAGGCAGTACATTGGG
GTGGGGTAAGGGACAGGCTACTTCTGTTTGGGAGGCTGCCATCACATCAA
GAACTAGACGCAACAATAGACGATTCTTCGTACTCTACTCTTGGCTGTAT
GTGATGGCGAACGCTGGTGGCCTTGCGAGACCCTGCAGTGTGTACCGGAT
CCTCACCCCTCCCCCTCCGCCCCCCGCCCTGCTCTGCTCCATCTCCACGC
CGACGACTCCCAGCAAATCCTGCCCAAGTACCACTTCGCGAAGGAGGAGA
CGCGGCGGCGGATCGAGCTTGCTAAGAGGATGCAAGCGGAGAGAGTGGCG
GCAGGAAACAAGGTCATTCAAAGACAGATCTTCAGCAAGACAGGTGTGGA
ATGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTTTTTTTCGGCCGGTGTTTTTTTCTGGACCTCCTTCTCGAGGG
AGGTCTCATATCCCTGGCCCTAACTCACGACCGTATCCCCTGCTGAAACC
AAGCTCACTATTTTCAGCGCTAAGGATGTTGTTTTTTCTCTTCATGCTTG
CTTTTGATGCGTCAAGCGGCAGAGGGCGTTCTTTGGTCGGGAGACATGGG
GTGTCTGGGTATGTTTTCTCGAGAGCATGCAACACTTCAGCGGTTGCGAT
CGTGGATCGATCCACCTCCAAAGAGTGTTGCCTAATCCCAGTGTTTGCGT
GTCGAATTTGTTGTGTTTTTGTCATCCCATCGTTGTCTGCGTTCTGCACG
ACACTTTGCTTCCCTTCAGCCACTGGTGTGGTAGATCTCACTTCACCCAG
GGGGCTCCCTCTCCAATGTCCCCTTCCTCTCGCTTCTCCCTTGCCGCAAT
ACACGTCGTTGTGTACGGTATTACCGTACCCGTATGGGGTAGTCGTACAG
TTCCGCGTGCAATTTCGAGAGGTTTCGTTCGGCGCTTGGGAATGTTAACG
CTTCCATGGACGACGACGCTTCATGCTTTGTGAGGGTTCATGGTATGGCT
GACCAAACTGCTGCCCCCCTCCCCCAACGCCTTTATTTTTCTTTGGTCCT
TCTCTTGGCTTGTCTACTTCAGGCTTCTGGACGAGGCGTTCCGGCACGGA
GGTGTACATGCTGGTAGACTATCCGGTACGGTACGGTGCGGTACGGTACG
GTACGGTACGTACCGTACGGCCCCTTCGCCATATGGCGCCCTGTCGTCGT
CCCCCGCGCGTTGTTGGTTCTCGTGCTGGGCTGGTGGTTGTTGCTACGAC
TGTTCCTGCTCTTGTTGCTGTTGTTGTTGTCCTTGTCCTTGTCCTTGTCC
TTGTTCTTGCTGCTGCGGTTTTGCCGATTCGCTGAAGTTCTGCCGCGTTG
TCATAATCATCCCCCCCCCTTCTCGCTCGCCTTCTTTTCGTACAGGGCCG
AGTGAGCTCGGGGTACTCGACGCACGGGGTAAAGTTGCCCATGGCGGTGT
GGTCTCCCTGCCGAGGGAGGTTCGAGATCTCGTACAAGATGTTCATGAAC
AACGGCTTCGTTCGCAGCACCGAGGCAGAGGCCTCCCACCTGTGGGACAT
GGAGATGATCCGGGTGAGGCTGAGACCAAGACTGGACAAGGAAGCATAAT
ACAGAATATACCGTAGGTTGCATTGTAAGGTGGCAAAATGGTTGGGTGTG
TTTTGTTTCGGAGTATAGTATGTTTTGTGAGTGTTTTTTTTTTGGAACCG
CGATGATCACGCGCACCCCGGACCGATTCTCAAATCTCGAATAGTCGGCA
GAACAAAGCACAAAGCAATGACGGTGGCGGCGTCGGCACCTTCTCGTCGA
GAGAGCTTTTCGCAAAACGTGTCATGTCATTTCGGCATCCTCTTCCTCGT
GGAGTAGTCGAGCTTCGAAAATCGGTCCAGGGGGTCTGGTGTCTTATGTC
ATGCCACCTACGGTACCGCCATGGTGGTAGTTTACTGCCCAAAAGAGAAG
CCATTTTTCTTGTGTGTCTTGCCTTTACGGTGGAGGCTGGTTAGTCGTGG
TAAGCGTTAGCCAGCACGGAGATAATCGGTGGTATGTTGTAGGGTGACGG
GGGCCCCGGCAAGGCACGGAGCCCCCTCCCCCCTCCTTCTCTCTCACACA
GTTACCTTCCTATTGGGTCCTAGTATCAACATTTTTCTCCGCGCTTCGCT
TCTGACAACAGGCTGTTCACCTGCGACCGGCATCACAAAGCCTGCTGTTG
GCATCGTCAAGGCTGTAGGTGGATTCATTTGGTTTCCATCGAGACCTGAA
CTCAACACCTGACTTGTGCTGGATGCACGCGGGGGGCTCTTTGTCTCGTG
GTTCAACATTTTTGTTCGGTTCCTCTTTTTCTCCCCAACTCAAGTACTTC
GAAGTACTAACCAACTGCCGTTGATTGAATAAACAAAAACGAAAAATGAC
GCACGGTCTGCGGCGTGCCATCTTCTTCTTCTTCTTCTCAGGCAGTACAT
GAGCGTGGTTTATCCTTCAGTTTCTTCTTCCTTTAAACCTCTTTCCCTTT
CCTCCTTGCGCCCCCTTCTCTCATCTCTCTTGTTCCTTTTCTCCGTCCAG
TGCTGTTGTTGTTGTTGTCGTTGCCGGTGTCGCCAGGGTTACTGAAATGG
TAGACACGGATGTTTCCTTTCCTTTGCTTTCCTCCTTGCGCTATCTTCTC
TCATCTCTCTTGTTTCTTTTCTCCGTCTGGTGTTGTTGTTGTTGTTGTTG
TTGCCGTTGTTGTTGCAGGACAAGCAGGACACGGACGTTTTCGTGCTCCG
CGGGTCTAGGCTGCTGATGGCCTGGCCCCACCTCGACAAGGCCTTTGACT
TCCTCTACGGCCGGCCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10911:1126..4145+

>mRNA_Ecto-sp9_F_contig10911.796.1 ID=mRNA_Ecto-sp9_F_contig10911.796.1|Name=mRNA_Ecto-sp9_F_contig10911.796.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10911:1126..4145+ (Ectocarpus species9 EcSCA_722f female)
ATGACCTTCCAGATGACCTTCCAGCAAATCCTGCCCAAGTACCACTTCGC
GAAGGAGGAGACGCGGCGGCGGATCGAGCTTGCTAAGAGGATGCAAGCGG
AGAGAGTGGCGGCAGGAAACAAGGTCATTCAAAGACAGATCTTCAGCAAG
ACAGCAAATCCTGCCCAAGTACCACTTCGCGAAGGAGGAGACGCGGCGGC
GGATCGAGCTTGCTAAGAGGATGCAAGCGGAGAGAGTGGCGGCAGGAAAC
AAGGTCATTCAAAGACAGATCTTCAGCAAGACAGGCTTCTGGACGAGGCG
TTCCGGCACGGAGGTGTACATGCTGGTAGACTATCCGGCTTCTGGACGAG
GCGTTCCGGCACGGAGGTGTACATGCTGGTAGACTATCCGGGCCGAGTGA
GCTCGGGGTACTCGACGCACGGGGTAAAGTTGCCCATGGCGGTGTGGTCT
CCCTGCCGAGGGAGGTTCGAGATCTCGTACAAGATGTTCATGAACAACGG
CTTCGTTCGCAGCACCGAGGCAGAGGCCTCCCACCTGTGGGACATGGAGA
TGATCCGGGGCCGAGTGAGCTCGGGGTACTCGACGCACGGGGTAAAGTTG
CCCATGGCGGTGTGGTCTCCCTGCCGAGGGAGGTTCGAGATCTCGTACAA
GATGTTCATGAACAACGGCTTCGTTCGCAGCACCGAGGCAGAGGCCTCCC
ACCTGTGGGACATGGAGATGATCCGGGCTGTTCACCTGCGACCGGCATCA
CAAAGCCTGCTGTTGGCATCGTCAAGGCTGCTGTTCACCTGCGACCGGCA
TCACAAAGCCTGCTGTTGGCATCGTCAAGGCTGACAAGCAGGACACGGAC
GTTTTCGTGCTCCGCGGGTCTAGGCTGCTGAGACAAGCAGGACACGGACG
TTTTCGTGCTCCGCGGGTCTAGGCTGCTGA
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